RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ZNF777Q9ULD5 760 aaPredicted RBP30.12■■■□□ 2.41
CLN3-205ENST00000359984 PLCH2O75038 1416 aa30.12■■■□□ 2.41
CLN3-205ENST00000359984 CDC42BPBQ9Y5S2 1711 aa30.12■■■□□ 2.41
CLN3-205ENST00000359984 MYO5CQ9NQX4 1742 aa30.11■■■□□ 2.41
CLN3-205ENST00000359984 CAMSAP2Q08AD1 1489 aa30.08■■■□□ 2.41
CLN3-205ENST00000359984 ARHGAP5Q13017 1502 aa30.08■■■□□ 2.41
CLN3-205ENST00000359984 ARAP3Q8WWN8 1544 aa30.03■■■□□ 2.4
CLN3-205ENST00000359984 EFCAB2Q5VUJ9 269 aa30.02■■■□□ 2.4
CLN3-205ENST00000359984 PTPRKQ15262 1439 aa30■■■□□ 2.39
CLN3-205ENST00000359984 CD109Q6YHK3 1445 aa30■■■□□ 2.39
CLN3-205ENST00000359984 SAMD9LQ8IVG5 1584 aa30■■■□□ 2.39
CLN3-205ENST00000359984 GLI2P10070 1586 aa29.99■■■□□ 2.39
CLN3-205ENST00000359984 DIP2BQ9P265 1576 aa29.97■■■□□ 2.39
CLN3-205ENST00000359984 FAM69CQ0P6D2 419 aa29.97■■■□□ 2.39
CLN3-205ENST00000359984 ABCC5O15440 1437 aa29.95■■■□□ 2.39
CLN3-205ENST00000359984 DAPK1P53355 1430 aa29.95■■■□□ 2.38
CLN3-205ENST00000359984 DNMT1P26358 1616 aaKnown RBP29.94■■■□□ 2.38
CLN3-205ENST00000359984 HNRNPMP52272 730 aaKnown RBP eCLIP29.93■■■□□ 2.38
CLN3-205ENST00000359984 FANCAO15360 1455 aa29.93■■■□□ 2.38
CLN3-205ENST00000359984 PLEKHH2Q8IVE3 1493 aa29.92■■■□□ 2.38
CLN3-205ENST00000359984 MBD5Q9P267 1494 aa29.92■■■□□ 2.38
CLN3-205ENST00000359984 KIAA1107Q9UPP5 1409 aa29.91■■■□□ 2.38
CLN3-205ENST00000359984 MAP3K4Q9Y6R4 1608 aa29.9■■■□□ 2.38
CLN3-205ENST00000359984 SYCP2Q9BX26 1530 aa29.88■■■□□ 2.37
CLN3-205ENST00000359984 CHIC2Q9UKJ5 165 aa29.88■■■□□ 2.37
CLN3-205ENST00000359984 ARHGEF5Q12774 1597 aa29.87■■■□□ 2.37
CLN3-205ENST00000359984 ARHGEF12Q9NZN5 1544 aa29.86■■■□□ 2.37
CLN3-205ENST00000359984 ABCC1P33527 1531 aa29.86■■■□□ 2.37
CLN3-205ENST00000359984 RSPH4AQ5TD94 716 aa29.85■■■□□ 2.37
CLN3-205ENST00000359984 AKNAQ7Z591 1439 aa29.83■■■□□ 2.37
CLN3-205ENST00000359984 CCDC141Q6ZP82 1450 aa29.82■■■□□ 2.36
CLN3-205ENST00000359984 CROCC2H7BZ55 1655 aa29.81■■■□□ 2.36
CLN3-205ENST00000359984 KIF13AQ9H1H9 1805 aa29.81■■■□□ 2.36
CLN3-205ENST00000359984 ADGRL1O94910 1474 aa29.8■■■□□ 2.36
CLN3-205ENST00000359984 CFAP74Q9C0B2 1584 aa29.79■■■□□ 2.36
CLN3-205ENST00000359984 TSPY4P0CV99 314 aa29.78■■■□□ 2.36
CLN3-205ENST00000359984 TSPY10P0CW01 314 aa29.78■■■□□ 2.36
CLN3-205ENST00000359984 SHANK2Q9UPX8 1470 aa29.78■■■□□ 2.36
CLN3-205ENST00000359984 SETD5Q9C0A6 1442 aa29.78■■■□□ 2.36
CLN3-205ENST00000359984 TRAPPC8Q9Y2L5 1435 aa29.78■■■□□ 2.36
CLN3-205ENST00000359984 ROCK1Q13464 1354 aa29.77■■■□□ 2.36
CLN3-205ENST00000359984 NEO1Q92859 1461 aa29.77■■■□□ 2.36
CLN3-205ENST00000359984 RRP7BPQ9NSQ0 103 aa29.77■■■□□ 2.36
CLN3-205ENST00000359984 HFM1A2PYH4 1435 aa29.77■■■□□ 2.36
CLN3-205ENST00000359984 SCAPERQ9BY12 1400 aa29.77■■■□□ 2.36
CLN3-205ENST00000359984 C9orf84Q5VXU9 1444 aa29.76■■■□□ 2.36
CLN3-205ENST00000359984 NAIPQ13075 1403 aa29.75■■■□□ 2.35
CLN3-205ENST00000359984 ADGRL2O95490 1459 aa29.73■■■□□ 2.35
CLN3-205ENST00000359984 RAB3GAP2Q9H2M9 1393 aa29.72■■■□□ 2.35
CLN3-205ENST00000359984 AFAP1Q8N556 730 aa29.72■■■□□ 2.35
CLN3-205ENST00000359984 NCOA1Q15788 1441 aa29.72■■■□□ 2.35
CLN3-205ENST00000359984 PPRC1Q5VV67 1664 aaKnown RBP29.71■■■□□ 2.35
CLN3-205ENST00000359984 TSPOAP1O95153 1857 aa29.7■■■□□ 2.35
CLN3-205ENST00000359984 ANKRD30AQ9BXX3 1397 aa29.7■■■□□ 2.34
CLN3-205ENST00000359984 ADGBQ8N7X0 1667 aa29.69■■■□□ 2.34
CLN3-205ENST00000359984 MAST1Q9Y2H9 1570 aa29.68■■■□□ 2.34
CLN3-205ENST00000359984 TEX14Q8IWB6 1497 aa29.67■■■□□ 2.34
CLN3-205ENST00000359984 GCC2Q8IWJ2 1684 aa29.64■■■□□ 2.34
CLN3-205ENST00000359984 SPAG9O60271 1321 aaKnown RBP29.64■■■□□ 2.33
CLN3-205ENST00000359984 HRCP23327 699 aa29.63■■■□□ 2.33
CLN3-205ENST00000359984 POGZQ7Z3K3 1410 aa29.62■■■□□ 2.33
CLN3-205ENST00000359984 TRHP20396 242 aaPredicted RBP29.61■■■□□ 2.33
CLN3-205ENST00000359984 ZNF518AQ6AHZ1 1483 aa29.61■■■□□ 2.33
CLN3-205ENST00000359984 DENND4BO75064 1496 aaPredicted RBP29.61■■■□□ 2.33
CLN3-205ENST00000359984 RTEL1-TNFRSF6BF6WH68 1400 aa29.59■■■□□ 2.33
CLN3-205ENST00000359984 KIF15Q9NS87 1388 aa29.59■■■□□ 2.33
CLN3-205ENST00000359984 KDM6BO15054 1643 aa29.57■■■□□ 2.32
CLN3-205ENST00000359984 RAPGEF3O95398 923 aa29.57■■■□□ 2.32
CLN3-205ENST00000359984 ZFYVE16Q7Z3T8 1539 aa29.56■■■□□ 2.32
CLN3-205ENST00000359984 PLXNC1O60486 1568 aa29.55■■■□□ 2.32
CLN3-205ENST00000359984 KDM5CP41229 1560 aa29.55■■■□□ 2.32
CLN3-205ENST00000359984 INO80Q9ULG1 1556 aaPredicted RBP29.54■■■□□ 2.32
CLN3-205ENST00000359984 ATP7AQ04656 1500 aa29.52■■■□□ 2.32
CLN3-205ENST00000359984 ANKRD50Q9ULJ7 1429 aa29.52■■■□□ 2.32
CLN3-205ENST00000359984 CCER1Q8TC90 406 aaPredicted RBP29.51■■■□□ 2.31
CLN3-205ENST00000359984 MYT1LQ9UL68 1186 aa29.51■■■□□ 2.31
CLN3-205ENST00000359984 RICTORQ6R327 1708 aa29.5■■■□□ 2.31
CLN3-205ENST00000359984 MLH3Q9UHC1 1453 aa29.48■■■□□ 2.31
CLN3-205ENST00000359984 DHX57Q6P158 1386 aaKnown RBP29.47■■■□□ 2.31
CLN3-205ENST00000359984 FRMPD1Q5SYB0 1578 aa29.47■■■□□ 2.31
CLN3-205ENST00000359984 KIDINS220Q9ULH0 1771 aa29.46■■■□□ 2.31
CLN3-205ENST00000359984 DUOX2Q9NRD8 1548 aa29.46■■■□□ 2.31
CLN3-205ENST00000359984 HECW2Q9P2P5 1572 aa29.45■■■□□ 2.31
CLN3-205ENST00000359984 COL17A1Q9UMD9 1497 aaPredicted RBP29.45■■■□□ 2.3
CLN3-205ENST00000359984 ACIN1Q9UKV3 1341 aaKnown RBP29.41■■■□□ 2.3
CLN3-205ENST00000359984 TRIM52Q96A61 297 aa29.4■■■□□ 2.3
CLN3-205ENST00000359984 ZMYM4Q5VZL5 1548 aa29.38■■■□□ 2.29
CLN3-205ENST00000359984 ERBINQ96RT1 1412 aa29.38■■■□□ 2.29
CLN3-205ENST00000359984 DHX29Q7Z478 1369 aaKnown RBP29.36■■■□□ 2.29
CLN3-205ENST00000359984 ABCA6Q8N139 1617 aa29.34■■■□□ 2.29
CLN3-205ENST00000359984 YEATS2Q9ULM3 1422 aa29.33■■■□□ 2.29
CLN3-205ENST00000359984 A2MP01023 1474 aa29.32■■■□□ 2.28
CLN3-205ENST00000359984 MAGI2Q86UL8 1455 aa29.32■■■□□ 2.28
CLN3-205ENST00000359984 DIP2CQ9Y2E4 1556 aa29.3■■■□□ 2.28
CLN3-205ENST00000359984 MPHOSPH9Q99550 1183 aa29.28■■■□□ 2.28
CLN3-205ENST00000359984 NUP155O75694 1391 aa29.27■■■□□ 2.28
CLN3-205ENST00000359984 PZPP20742 1482 aa29.25■■■□□ 2.27
CLN3-205ENST00000359984 CLSPNQ9HAW4 1339 aa29.25■■■□□ 2.27
CLN3-205ENST00000359984 UNC13BO14795 1591 aa29.25■■■□□ 2.27
CLN3-205ENST00000359984 KIF3BO15066 747 aa29.24■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms