RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 SUPT6HQ7KZ85 1726 aaKnown RBP26.9■■□□□ 1.9
CLN3-203ENST00000357806 ITSN2Q9NZM3 1697 aa26.89■■□□□ 1.9
CLN3-203ENST00000357806 MAP3K1Q13233 1512 aa26.88■■□□□ 1.89
CLN3-203ENST00000357806 ADGRL1O94910 1474 aa26.87■■□□□ 1.89
CLN3-203ENST00000357806 DENND4BO75064 1496 aaPredicted RBP26.85■■□□□ 1.89
CLN3-203ENST00000357806 EFCAB2Q5VUJ9 269 aa26.83■■□□□ 1.89
CLN3-203ENST00000357806 LRRC9Q6ZRR7 1453 aa26.8■■□□□ 1.88
CLN3-203ENST00000357806 ZMYM4Q5VZL5 1548 aa26.8■■□□□ 1.88
CLN3-203ENST00000357806 GPATCH8Q9UKJ3 1502 aaKnown RBP26.8■■□□□ 1.88
CLN3-203ENST00000357806 ABCC1P33527 1531 aa26.79■■□□□ 1.88
CLN3-203ENST00000357806 RAPGEF3O95398 923 aa26.79■■□□□ 1.88
CLN3-203ENST00000357806 SCAPERQ9BY12 1400 aa26.78■■□□□ 1.88
CLN3-203ENST00000357806 POGZQ7Z3K3 1410 aa26.78■■□□□ 1.88
CLN3-203ENST00000357806 CCNB3Q8WWL7 1395 aa26.77■■□□□ 1.88
CLN3-203ENST00000357806 SAMD9LQ8IVG5 1584 aa26.77■■□□□ 1.88
CLN3-203ENST00000357806 ARHGEF40Q8TER5 1519 aa26.75■■□□□ 1.87
CLN3-203ENST00000357806 NCOA2Q15596 1464 aa26.75■■□□□ 1.87
CLN3-203ENST00000357806 ZNF518AQ6AHZ1 1483 aa26.73■■□□□ 1.87
CLN3-203ENST00000357806 KDM5CP41229 1560 aa26.72■■□□□ 1.87
CLN3-203ENST00000357806 APLP2Q06481 763 aa26.71■■□□□ 1.87
CLN3-203ENST00000357806 MAGI2Q86UL8 1455 aa26.69■■□□□ 1.86
CLN3-203ENST00000357806 ZFYVE16Q7Z3T8 1539 aa26.69■■□□□ 1.86
CLN3-203ENST00000357806 HECW2Q9P2P5 1572 aa26.68■■□□□ 1.86
CLN3-203ENST00000357806 SYCP2Q9BX26 1530 aa26.67■■□□□ 1.86
CLN3-203ENST00000357806 PLEKHH2Q8IVE3 1493 aa26.66■■□□□ 1.86
CLN3-203ENST00000357806 CFDP1Q9UEE9 299 aaPredicted RBP26.66■■□□□ 1.86
CLN3-203ENST00000357806 ARHGEF12Q9NZN5 1544 aa26.65■■□□□ 1.86
CLN3-203ENST00000357806 KANK4Q5T7N3 995 aaPredicted RBP26.63■■□□□ 1.85
CLN3-203ENST00000357806 ZNF777Q9ULD5 760 aaPredicted RBP26.63■■□□□ 1.85
CLN3-203ENST00000357806 KIAA1107Q9UPP5 1409 aa26.6■■□□□ 1.85
CLN3-203ENST00000357806 TRAPPC8Q9Y2L5 1435 aa26.6■■□□□ 1.85
CLN3-203ENST00000357806 YEATS2Q9ULM3 1422 aa26.59■■□□□ 1.85
CLN3-203ENST00000357806 KIDINS220Q9ULH0 1771 aa26.58■■□□□ 1.85
CLN3-203ENST00000357806 ABCA6Q8N139 1617 aa26.57■■□□□ 1.84
CLN3-203ENST00000357806 CAMSAP2Q08AD1 1489 aa26.56■■□□□ 1.84
CLN3-203ENST00000357806 SIGLEC1Q9BZZ2 1709 aa26.56■■□□□ 1.84
CLN3-203ENST00000357806 MLH3Q9UHC1 1453 aa26.56■■□□□ 1.84
CLN3-203ENST00000357806 AFAP1Q8N556 730 aa26.55■■□□□ 1.84
CLN3-203ENST00000357806 DIP2CQ9Y2E4 1556 aa26.55■■□□□ 1.84
CLN3-203ENST00000357806 BCORL1Q5H9F3 1711 aa26.55■■□□□ 1.84
CLN3-203ENST00000357806 MYOM3Q5VTT5 1437 aa26.54■■□□□ 1.84
CLN3-203ENST00000357806 INO80Q9ULG1 1556 aaPredicted RBP26.53■■□□□ 1.84
CLN3-203ENST00000357806 C9orf84Q5VXU9 1444 aa26.51■■□□□ 1.83
CLN3-203ENST00000357806 ATP10AO60312 1499 aa26.5■■□□□ 1.83
CLN3-203ENST00000357806 KDM4FA0A1W2PPD8 638 aa26.5■■□□□ 1.83
CLN3-203ENST00000357806 REREQ9P2R6 1566 aa26.5■■□□□ 1.83
CLN3-203ENST00000357806 ATP7AQ04656 1500 aa26.49■■□□□ 1.83
CLN3-203ENST00000357806 HNRNPMP52272 730 aaKnown RBP eCLIP26.49■■□□□ 1.83
CLN3-203ENST00000357806 MIA2Q96PC5 1412 aa26.49■■□□□ 1.83
CLN3-203ENST00000357806 ARHGEF5Q12774 1597 aa26.49■■□□□ 1.83
CLN3-203ENST00000357806 MYT1LQ9UL68 1186 aa26.49■■□□□ 1.83
CLN3-203ENST00000357806 ZNF644Q9H582 1327 aaPredicted RBP26.48■■□□□ 1.83
CLN3-203ENST00000357806 ADAMTSL3P82987 1691 aa26.48■■□□□ 1.83
CLN3-203ENST00000357806 MBD5Q9P267 1494 aa26.48■■□□□ 1.83
CLN3-203ENST00000357806 AEBP2Q6ZN18 517 aaPredicted RBP26.48■■□□□ 1.83
CLN3-203ENST00000357806 CCDC141Q6ZP82 1450 aa26.45■■□□□ 1.82
CLN3-203ENST00000357806 ADGBQ8N7X0 1667 aa26.45■■□□□ 1.82
CLN3-203ENST00000357806 PTPN23Q9H3S7 1636 aa26.45■■□□□ 1.82
CLN3-203ENST00000357806 ARID4BQ4LE39 1312 aaPredicted RBP26.44■■□□□ 1.82
CLN3-203ENST00000357806 SPAG9O60271 1321 aaKnown RBP26.43■■□□□ 1.82
CLN3-203ENST00000357806 FER1L4A9Z1Z3 1794 aa26.42■■□□□ 1.82
CLN3-203ENST00000357806 MADDQ8WXG6 1647 aa26.42■■□□□ 1.82
CLN3-203ENST00000357806 CROCC2H7BZ55 1655 aa26.4■■□□□ 1.82
CLN3-203ENST00000357806 RIMS1Q86UR5 1692 aaKnown RBP26.38■■□□□ 1.81
CLN3-203ENST00000357806 FGD6Q6ZV73 1430 aa26.37■■□□□ 1.81
CLN3-203ENST00000357806 RSPH4AQ5TD94 716 aa26.36■■□□□ 1.81
CLN3-203ENST00000357806 RTEL1-TNFRSF6BF6WH68 1400 aa26.36■■□□□ 1.81
CLN3-203ENST00000357806 AGLP35573 1532 aa26.36■■□□□ 1.81
CLN3-203ENST00000357806 PLXNC1O60486 1568 aa26.35■■□□□ 1.81
CLN3-203ENST00000357806 MAST1Q9Y2H9 1570 aa26.35■■□□□ 1.81
CLN3-203ENST00000357806 TCOF1Q13428 1488 aaKnown RBP26.34■■□□□ 1.81
CLN3-203ENST00000357806 DNMT1P26358 1616 aaKnown RBP26.32■■□□□ 1.8
CLN3-203ENST00000357806 A2MP01023 1474 aa26.3■■□□□ 1.8
CLN3-203ENST00000357806 PTPRMP28827 1452 aa26.26■■□□□ 1.79
CLN3-203ENST00000357806 SHANK2Q9UPX8 1470 aa26.26■■□□□ 1.79
CLN3-203ENST00000357806 TSPY4P0CV99 314 aa26.25■■□□□ 1.79
CLN3-203ENST00000357806 TSPY10P0CW01 314 aa26.25■■□□□ 1.79
CLN3-203ENST00000357806 MLECQ14165 292 aa26.25■■□□□ 1.79
CLN3-203ENST00000357806 DAPK1P53355 1430 aa26.22■■□□□ 1.79
CLN3-203ENST00000357806 ABCC5O15440 1437 aa26.2■■□□□ 1.78
CLN3-203ENST00000357806 MROH2AA6NES4 1674 aa26.17■■□□□ 1.78
CLN3-203ENST00000357806 PPARGC1BQ86YN6 1023 aaKnown RBP26.17■■□□□ 1.78
CLN3-203ENST00000357806 EIF2AK4Q9P2K8 1649 aaKnown RBP26.17■■□□□ 1.78
CLN3-203ENST00000357806 DHX29Q7Z478 1369 aaKnown RBP26.16■■□□□ 1.78
CLN3-203ENST00000357806 C3P01024 1663 aa26.15■■□□□ 1.78
CLN3-203ENST00000357806 CLTCQ00610 1675 aaKnown RBP26.14■■□□□ 1.78
CLN3-203ENST00000357806 FAM50AQ14320 339 aaKnown RBP26.13■■□□□ 1.77
CLN3-203ENST00000357806 DUOX2Q9NRD8 1548 aa26.12■■□□□ 1.77
CLN3-203ENST00000357806 RNF17Q9BXT8 1623 aaKnown RBP26.11■■□□□ 1.77
CLN3-203ENST00000357806 CNTLNQ9NXG0 1405 aa26.1■■□□□ 1.77
CLN3-203ENST00000357806 ESF1Q9H501 851 aaKnown RBP26.08■■□□□ 1.77
CLN3-203ENST00000357806 FAM135AQ9P2D6 1515 aa26.07■■□□□ 1.76
CLN3-203ENST00000357806 ADGRL2O95490 1459 aa26.06■■□□□ 1.76
CLN3-203ENST00000357806 KIF15Q9NS87 1388 aa26.06■■□□□ 1.76
CLN3-203ENST00000357806 ZC3H13Q5T200 1668 aaKnown RBP26.04■■□□□ 1.76
CLN3-203ENST00000357806 PREX1Q8TCU6 1659 aa26.04■■□□□ 1.76
CLN3-203ENST00000357806 ANKRD30AQ9BXX3 1397 aa26.04■■□□□ 1.76
CLN3-203ENST00000357806 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.04■■□□□ 1.76
CLN3-203ENST00000357806 GGT6Q6P531 493 aa26.04■■□□□ 1.76
CLN3-203ENST00000357806 ERBINQ96RT1 1412 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms