RNA–Protein interactions for RNA: ENST00000357412.2

LINC01560-201, Transcript of long intergenic non-protein coding RNA 1560, humanhuman

BASIC

Gene LINC01560, Length 1,253 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01560-201ENST00000357412 ZFYVE16Q7Z3T8 1539 aa16.7■□□□□ 0.26
LINC01560-201ENST00000357412 CLIP1P30622 1438 aa16.7■□□□□ 0.26
LINC01560-201ENST00000357412 CASKIN1Q8WXD9 1431 aa16.7■□□□□ 0.26
LINC01560-201ENST00000357412 CFAP74Q9C0B2 1584 aa16.68■□□□□ 0.26
LINC01560-201ENST00000357412 ATP10AO60312 1499 aa16.67■□□□□ 0.26
LINC01560-201ENST00000357412 BCORL1Q5H9F3 1711 aa16.66■□□□□ 0.26
LINC01560-201ENST00000357412 RICTORQ6R327 1708 aa16.66■□□□□ 0.26
LINC01560-201ENST00000357412 PLPPR3Q6T4P5 718 aa16.66■□□□□ 0.26
LINC01560-201ENST00000357412 MADDQ8WXG6 1647 aa16.65■□□□□ 0.26
LINC01560-201ENST00000357412 LMTK3Q96Q04 1460 aa16.65■□□□□ 0.26
LINC01560-201ENST00000357412 C9orf84Q5VXU9 1444 aa16.63■□□□□ 0.25
LINC01560-201ENST00000357412 KIF14Q15058 1648 aa16.63■□□□□ 0.25
LINC01560-201ENST00000357412 CCDC18Q5T9S5 1454 aa16.62■□□□□ 0.25
LINC01560-201ENST00000357412 ZNF518AQ6AHZ1 1483 aa16.62■□□□□ 0.25
LINC01560-201ENST00000357412 ARHGAP5Q13017 1502 aa16.62■□□□□ 0.25
LINC01560-201ENST00000357412 HSPA2P54652 639 aa16.62■□□□□ 0.25
LINC01560-201ENST00000357412 SENP3Q9H4L4 574 aaPredicted RBP16.62■□□□□ 0.25
LINC01560-201ENST00000357412 PCF11O94913 1555 aaKnown RBP16.6■□□□□ 0.25
LINC01560-201ENST00000357412 MYT1LQ9UL68 1186 aa16.6■□□□□ 0.25
LINC01560-201ENST00000357412 TRAPPC8Q9Y2L5 1435 aa16.6■□□□□ 0.25
LINC01560-201ENST00000357412 ARHGEF12Q9NZN5 1544 aa16.59■□□□□ 0.25
LINC01560-201ENST00000357412 CEBPAP49715 358 aaPredicted RBP16.58■□□□□ 0.24
LINC01560-201ENST00000357412 FYCO1Q9BQS8 1478 aa16.57■□□□□ 0.24
LINC01560-201ENST00000357412 MLH3Q9UHC1 1453 aa16.57■□□□□ 0.24
LINC01560-201ENST00000357412 FBXO41Q8TF61 875 aa16.56■□□□□ 0.24
LINC01560-201ENST00000357412 SIGLEC1Q9BZZ2 1709 aa16.56■□□□□ 0.24
LINC01560-201ENST00000357412 KDM5CP41229 1560 aa16.55■□□□□ 0.24
LINC01560-201ENST00000357412 ZNF777Q9ULD5 760 aaPredicted RBP16.54■□□□□ 0.24
LINC01560-201ENST00000357412 GPATCH8Q9UKJ3 1502 aaKnown RBP16.53■□□□□ 0.24
LINC01560-201ENST00000357412 RIMS1Q86UR5 1692 aaKnown RBP16.53■□□□□ 0.24
LINC01560-201ENST00000357412 ABCC1P33527 1531 aa16.51■□□□□ 0.23
LINC01560-201ENST00000357412 HNRNPMP52272 730 aaKnown RBP eCLIP16.51■□□□□ 0.23
LINC01560-201ENST00000357412 CFDP1Q9UEE9 299 aaPredicted RBP16.51■□□□□ 0.23
LINC01560-201ENST00000357412 MYO5CQ9NQX4 1742 aa16.5■□□□□ 0.23
LINC01560-201ENST00000357412 DIP2CQ9Y2E4 1556 aa16.48■□□□□ 0.23
LINC01560-201ENST00000357412 LRRIQ1Q96JM4 1722 aa16.48■□□□□ 0.23
LINC01560-201ENST00000357412 SPAG9O60271 1321 aaKnown RBP16.47■□□□□ 0.23
LINC01560-201ENST00000357412 KIAA1107Q9UPP5 1409 aa16.47■□□□□ 0.23
LINC01560-201ENST00000357412 AGLP35573 1532 aa16.47■□□□□ 0.23
LINC01560-201ENST00000357412 MTUS2Q5JR59 1369 aa16.47■□□□□ 0.23
LINC01560-201ENST00000357412 CCNB3Q8WWL7 1395 aa16.47■□□□□ 0.23
LINC01560-201ENST00000357412 REREQ9P2R6 1566 aa16.47■□□□□ 0.23
LINC01560-201ENST00000357412 PREX2Q70Z35 1606 aa16.45■□□□□ 0.22
LINC01560-201ENST00000357412 ESF1Q9H501 851 aaKnown RBP16.45■□□□□ 0.22
LINC01560-201ENST00000357412 ZNF644Q9H582 1327 aaPredicted RBP16.44■□□□□ 0.22
LINC01560-201ENST00000357412 CEP162Q5TB80 1403 aa16.43■□□□□ 0.22
LINC01560-201ENST00000357412 CDC42BPBQ9Y5S2 1711 aa16.42■□□□□ 0.22
LINC01560-201ENST00000357412 ABCA6Q8N139 1617 aa16.42■□□□□ 0.22
LINC01560-201ENST00000357412 UHRF1BP1Q6BDS2 1440 aa16.42■□□□□ 0.22
LINC01560-201ENST00000357412 SYCP2Q9BX26 1530 aa16.41■□□□□ 0.22
LINC01560-201ENST00000357412 CERKQ8TCT0 537 aa16.41■□□□□ 0.22
LINC01560-201ENST00000357412 SAMD9LQ8IVG5 1584 aa16.41■□□□□ 0.22
LINC01560-201ENST00000357412 PLEKHH2Q8IVE3 1493 aa16.41■□□□□ 0.22
LINC01560-201ENST00000357412 CNTLNQ9NXG0 1405 aa16.4■□□□□ 0.22
LINC01560-201ENST00000357412 DMRT2Q9Y5R5 561 aa16.39■□□□□ 0.21
LINC01560-201ENST00000357412 FER1L4A9Z1Z3 1794 aa16.38■□□□□ 0.21
LINC01560-201ENST00000357412 ZMYM3Q14202 1370 aa16.38■□□□□ 0.21
LINC01560-201ENST00000357412 MBD5Q9P267 1494 aa16.36■□□□□ 0.21
LINC01560-201ENST00000357412 LOC105371045A0A1W2PR82 267 aa16.36■□□□□ 0.21
LINC01560-201ENST00000357412 ITSN2Q9NZM3 1697 aa16.36■□□□□ 0.21
LINC01560-201ENST00000357412 A2MP01023 1474 aa16.35■□□□□ 0.21
LINC01560-201ENST00000357412 GGT6Q6P531 493 aa16.35■□□□□ 0.21
LINC01560-201ENST00000357412 KIDINS220Q9ULH0 1771 aa16.35■□□□□ 0.21
LINC01560-201ENST00000357412 CDC42BPAQ5VT25 1732 aa16.33■□□□□ 0.2
LINC01560-201ENST00000357412 ATP7AQ04656 1500 aa16.32■□□□□ 0.2
LINC01560-201ENST00000357412 NPATQ14207 1427 aa16.32■□□□□ 0.2
LINC01560-201ENST00000357412 EHBP1L1Q8N3D4 1523 aa16.32■□□□□ 0.2
LINC01560-201ENST00000357412 PPP6R1Q9UPN7 881 aa16.32■□□□□ 0.2
LINC01560-201ENST00000357412 RTEL1-TNFRSF6BF6WH68 1400 aa16.31■□□□□ 0.2
LINC01560-201ENST00000357412 TIAM1Q13009 1591 aa16.3■□□□□ 0.2
LINC01560-201ENST00000357412 PTPRTO14522 1441 aa16.3■□□□□ 0.2
LINC01560-201ENST00000357412 DHX29Q7Z478 1369 aaKnown RBP16.3■□□□□ 0.2
LINC01560-201ENST00000357412 RSPH4AQ5TD94 716 aa16.3■□□□□ 0.2
LINC01560-201ENST00000357412 NCOA2Q15596 1464 aa16.29■□□□□ 0.2
LINC01560-201ENST00000357412 PLXNC1O60486 1568 aa16.29■□□□□ 0.2
LINC01560-201ENST00000357412 NCOA1Q15788 1441 aa16.28■□□□□ 0.2
LINC01560-201ENST00000357412 PREX1Q8TCU6 1659 aa16.27■□□□□ 0.2
LINC01560-201ENST00000357412 INO80Q9ULG1 1556 aaPredicted RBP16.27■□□□□ 0.2
LINC01560-201ENST00000357412 PTPRKQ15262 1439 aa16.27■□□□□ 0.19
LINC01560-201ENST00000357412 VPS8Q8N3P4 1428 aa16.26■□□□□ 0.19
LINC01560-201ENST00000357412 KIF3BO15066 747 aa16.25■□□□□ 0.19
LINC01560-201ENST00000357412 KANK4Q5T7N3 995 aaPredicted RBP16.25■□□□□ 0.19
LINC01560-201ENST00000357412 NCKAP5LQ9HCH0 1330 aa16.24■□□□□ 0.19
LINC01560-201ENST00000357412 CCDC141Q6ZP82 1450 aa16.24■□□□□ 0.19
LINC01560-201ENST00000357412 C3P01024 1663 aa16.24■□□□□ 0.19
LINC01560-201ENST00000357412 TSPY4P0CV99 314 aa16.23■□□□□ 0.19
LINC01560-201ENST00000357412 TSPY10P0CW01 314 aa16.23■□□□□ 0.19
LINC01560-201ENST00000357412 CAMSAP2Q08AD1 1489 aa16.22■□□□□ 0.19
LINC01560-201ENST00000357412 LRRC9Q6ZRR7 1453 aa16.22■□□□□ 0.19
LINC01560-201ENST00000357412 PKD2Q13563 968 aa16.21■□□□□ 0.19
LINC01560-201ENST00000357412 FBXO31Q5XUX0 539 aaPredicted RBP16.21■□□□□ 0.19
LINC01560-201ENST00000357412 SETD1BQ9UPS6 1966 aaKnown RBP16.2■□□□□ 0.18
LINC01560-201ENST00000357412 STRCQ7RTU9 1775 aa16.19■□□□□ 0.18
LINC01560-201ENST00000357412 WASHC2CQ9Y4E1 1318 aa16.19■□□□□ 0.18
LINC01560-201ENST00000357412 CAMSAP1Q5T5Y3 1602 aa16.17■□□□□ 0.18
LINC01560-201ENST00000357412 ZNF335Q9H4Z2 1342 aaPredicted RBP16.17■□□□□ 0.18
LINC01560-201ENST00000357412 PLA2R1Q13018 1463 aa16.16■□□□□ 0.18
LINC01560-201ENST00000357412 SUPT6HQ7KZ85 1726 aaKnown RBP16.16■□□□□ 0.18
LINC01560-201ENST00000357412 TCOF1Q13428 1488 aaKnown RBP16.16■□□□□ 0.18
LINC01560-201ENST00000357412 LTBP4Q8N2S1 1624 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms