RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 MCCP23508 829 aa23.01■■□□□ 1.27
COL18A1-202ENST00000355480 HSCBQ8IWL3 235 aa23■■□□□ 1.27
COL18A1-202ENST00000355480 CSB-PGBD3P0DP91 1061 aa23■■□□□ 1.27
COL18A1-202ENST00000355480 HSPA5P11021 654 aaKnown RBP22.97■■□□□ 1.27
COL18A1-202ENST00000355480 NRDCO43847 1150 aa22.97■■□□□ 1.27
COL18A1-202ENST00000355480 CARMIL2Q6F5E8 1435 aa22.97■■□□□ 1.27
COL18A1-202ENST00000355480 ERICH6BQ5W0A0 696 aa22.97■■□□□ 1.27
COL18A1-202ENST00000355480 ZNF330Q9Y3S2 320 aaPredicted RBP22.97■■□□□ 1.27
COL18A1-202ENST00000355480 FOXD1Q16676 465 aa22.96■■□□□ 1.27
COL18A1-202ENST00000355480 APBB1O00213 710 aa22.96■■□□□ 1.27
COL18A1-202ENST00000355480 TIMELESSQ9UNS1 1208 aa22.96■■□□□ 1.27
COL18A1-202ENST00000355480 ARHGAP35Q9NRY4 1499 aa22.95■■□□□ 1.27
COL18A1-202ENST00000355480 NOP58Q9Y2X3 529 aaKnown RBP22.95■■□□□ 1.26
COL18A1-202ENST00000355480 CLSTN1O94985 981 aa22.95■■□□□ 1.26
COL18A1-202ENST00000355480 KTN1Q86UP2 1357 aaKnown RBP22.95■■□□□ 1.26
COL18A1-202ENST00000355480 SETD5Q9C0A6 1442 aa22.93■■□□□ 1.26
COL18A1-202ENST00000355480 U2AF1L5P0DN76 240 aaPredicted RBP22.92■■□□□ 1.26
COL18A1-202ENST00000355480 U2AF1Q01081 240 aaKnown RBP eCLIP22.92■■□□□ 1.262e-9■■■□□ 17.5
COL18A1-202ENST00000355480 IPO8O15397 1037 aaKnown RBP22.92■■□□□ 1.26
COL18A1-202ENST00000355480 SOGA1O94964 1423 aa22.92■■□□□ 1.26
COL18A1-202ENST00000355480 EFCAB2Q5VUJ9 269 aa22.91■■□□□ 1.26
COL18A1-202ENST00000355480 NAP1L5Q96NT1 182 aaPredicted RBP22.9■■□□□ 1.26
COL18A1-202ENST00000355480 SPRYD3Q8NCJ5 442 aa22.89■■□□□ 1.25
COL18A1-202ENST00000355480 ROCK2O75116 1388 aaKnown RBP22.89■■□□□ 1.25
COL18A1-202ENST00000355480 CFAP44Q96MT7 982 aa22.89■■□□□ 1.25
COL18A1-202ENST00000355480 CALD1Q05682 793 aaKnown RBP22.88■■□□□ 1.25
COL18A1-202ENST00000355480 GNL2Q13823 731 aaKnown RBP22.88■■□□□ 1.25
COL18A1-202ENST00000355480 CECR2Q9BXF3 1484 aa22.87■■□□□ 1.25
COL18A1-202ENST00000355480 KIAA1211Q6ZU35 1233 aa22.87■■□□□ 1.25
COL18A1-202ENST00000355480 NUP155O75694 1391 aa22.86■■□□□ 1.25
COL18A1-202ENST00000355480 CCDC9Q9Y3X0 531 aaKnown RBP22.85■■□□□ 1.25
COL18A1-202ENST00000355480 CCER2I3L3R5 266 aa22.84■■□□□ 1.25
COL18A1-202ENST00000355480 ITPRIPQ8IWB1 547 aa22.83■■□□□ 1.25
COL18A1-202ENST00000355480 NCBP3Q53F19 620 aaKnown RBP22.83■■□□□ 1.24
COL18A1-202ENST00000355480 KIF3BO15066 747 aa22.82■■□□□ 1.24
COL18A1-202ENST00000355480 MPHOSPH9Q99550 1183 aa22.81■■□□□ 1.24
COL18A1-202ENST00000355480 ANKRD30AQ9BXX3 1397 aa22.8■■□□□ 1.24
COL18A1-202ENST00000355480 KANK4Q5T7N3 995 aaPredicted RBP22.8■■□□□ 1.24
COL18A1-202ENST00000355480 PDS5BQ9NTI5 1447 aa22.8■■□□□ 1.24
COL18A1-202ENST00000355480 TMX4Q9H1E5 349 aaPredicted RBP22.8■■□□□ 1.24
COL18A1-202ENST00000355480 TDRD9Q8NDG6 1382 aaKnown RBP22.79■■□□□ 1.24
COL18A1-202ENST00000355480 DRC7Q8IY82 874 aa22.79■■□□□ 1.24
COL18A1-202ENST00000355480 SPAG9O60271 1321 aaKnown RBP22.79■■□□□ 1.24
COL18A1-202ENST00000355480 STK31Q9BXU1 1019 aa22.78■■□□□ 1.24
COL18A1-202ENST00000355480 RTN4Q9NQC3 1192 aaKnown RBP22.78■■□□□ 1.24
COL18A1-202ENST00000355480 EIF3AQ14152 1382 aaKnown RBP22.78■■□□□ 1.24
COL18A1-202ENST00000355480 EID1Q9Y6B2 187 aa22.77■■□□□ 1.24
COL18A1-202ENST00000355480 VPS8Q8N3P4 1428 aa22.77■■□□□ 1.24
COL18A1-202ENST00000355480 RALBP1Q15311 655 aa22.77■■□□□ 1.24
COL18A1-202ENST00000355480 CHAF1AQ13111 956 aaPredicted RBP22.76■■□□□ 1.23
COL18A1-202ENST00000355480 GORABQ5T7V8 394 aa22.76■■□□□ 1.23
COL18A1-202ENST00000355480 CHMP3Q9Y3E7 222 aa22.76■■□□□ 1.23
COL18A1-202ENST00000355480 CHMP4AQ9BY43 222 aa22.76■■□□□ 1.23
COL18A1-202ENST00000355480 RWDD1Q9H446 243 aaPredicted RBP22.76■■□□□ 1.23
COL18A1-202ENST00000355480 NUTM2DQ5VT03 806 aaPredicted RBP22.75■■□□□ 1.23
COL18A1-202ENST00000355480 TERF2IPQ9NYB0 399 aa22.75■■□□□ 1.23
COL18A1-202ENST00000355480 RCAN3Q9UKA8 241 aa22.74■■□□□ 1.23
COL18A1-202ENST00000355480 NGDNQ8NEJ9 315 aaKnown RBP22.74■■□□□ 1.23
COL18A1-202ENST00000355480 FMN1Q68DA7 1419 aa22.73■■□□□ 1.23
COL18A1-202ENST00000355480 TAF7LQ5H9L4 462 aa22.73■■□□□ 1.23
COL18A1-202ENST00000355480 HNRNPMP52272 730 aaKnown RBP eCLIP22.73■■□□□ 1.236e-10■■■■■ 46.8
COL18A1-202ENST00000355480 WASHC2CQ9Y4E1 1318 aa22.71■■□□□ 1.23
COL18A1-202ENST00000355480 MSNP26038 577 aaKnown RBP22.7■■□□□ 1.22
COL18A1-202ENST00000355480 SMC4Q9NTJ3 1288 aa22.69■■□□□ 1.22
COL18A1-202ENST00000355480 RAB3GAP2Q9H2M9 1393 aa22.68■■□□□ 1.22
COL18A1-202ENST00000355480 L1TD1Q5T7N2 865 aaKnown RBP22.67■■□□□ 1.22
COL18A1-202ENST00000355480 AMPHP49418 695 aa22.67■■□□□ 1.22
COL18A1-202ENST00000355480 GPATCH3Q96I76 525 aa22.67■■□□□ 1.22
COL18A1-202ENST00000355480 SLC4A10Q6U841 1118 aa22.66■■□□□ 1.22
COL18A1-202ENST00000355480 CCDC88BA6NC98 1476 aa22.66■■□□□ 1.22
COL18A1-202ENST00000355480 LTV1Q96GA3 475 aaPredicted RBP22.66■■□□□ 1.22
COL18A1-202ENST00000355480 NUTM2FA1L443 756 aa22.65■■□□□ 1.22
COL18A1-202ENST00000355480 HDAC5Q9UQL6 1122 aa22.65■■□□□ 1.22
COL18A1-202ENST00000355480 ABCC8Q09428 1581 aa22.64■■□□□ 1.21
COL18A1-202ENST00000355480 TRIM6-TRIM34B2RNG4 842 aa22.64■■□□□ 1.21
COL18A1-202ENST00000355480 HMMRO75330 724 aa22.63■■□□□ 1.21
COL18A1-202ENST00000355480 GBP4Q96PP9 640 aa22.63■■□□□ 1.21
COL18A1-202ENST00000355480 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.63■■□□□ 1.213e-6■■□□□ 13.3
COL18A1-202ENST00000355480 G3V3G9 751 aa22.63■■□□□ 1.21
COL18A1-202ENST00000355480 HTATSF1O43719 755 aaKnown RBP22.63■■□□□ 1.21
COL18A1-202ENST00000355480 DCAF8Q5TAQ9 597 aa22.63■■□□□ 1.21
COL18A1-202ENST00000355480 CCDC146Q8IYE0 955 aa22.63■■□□□ 1.21
COL18A1-202ENST00000355480 PMFBP1Q8TBY8 1022 aa22.63■■□□□ 1.21
COL18A1-202ENST00000355480 KIAA2012Q0VF49 1180 aa22.61■■□□□ 1.21
COL18A1-202ENST00000355480 HSP90B1P14625 803 aaKnown RBP22.6■■□□□ 1.21
COL18A1-202ENST00000355480 LMOD3Q0VAK6 560 aa22.59■■□□□ 1.21
COL18A1-202ENST00000355480 CLUAP1Q96AJ1 413 aa22.59■■□□□ 1.21
COL18A1-202ENST00000355480 RSPH4AQ5TD94 716 aa22.59■■□□□ 1.21
COL18A1-202ENST00000355480 SMARCA2P51531 1590 aa22.59■■□□□ 1.21
COL18A1-202ENST00000355480 MFAP1P55081 439 aaKnown RBP22.58■■□□□ 1.21
COL18A1-202ENST00000355480 L3MBTL2Q969R5 705 aa22.58■■□□□ 1.21
COL18A1-202ENST00000355480 SLKQ9H2G2 1235 aaPredicted RBP22.58■■□□□ 1.21
COL18A1-202ENST00000355480 TRAK1Q9UPV9 953 aa22.58■■□□□ 1.2
COL18A1-202ENST00000355480 GTF2E1P29083 439 aaPredicted RBP22.57■■□□□ 1.2
COL18A1-202ENST00000355480 PTMSP20962 102 aa22.56■■□□□ 1.2
COL18A1-202ENST00000355480 FRAT2O75474 233 aaPredicted RBP22.54■■□□□ 1.2
COL18A1-202ENST00000355480 CENPJQ9HC77 1338 aaPredicted RBP22.53■■□□□ 1.2
COL18A1-202ENST00000355480 GZF1Q9H116 711 aaPredicted RBP22.53■■□□□ 1.2
COL18A1-202ENST00000355480 TCERG1O14776 1098 aaKnown RBP22.53■■□□□ 1.2
COL18A1-202ENST00000355480 FHOD3Q2V2M9 1422 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms