RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ARAP3Q8WWN8 1544 aa34.46■■■■□ 3.11
SHMT1-203ENST00000354098 EFCAB2Q5VUJ9 269 aa34.44■■■■□ 3.1
SHMT1-203ENST00000354098 NEO1Q92859 1461 aa34.43■■■■□ 3.1
SHMT1-203ENST00000354098 CFDP1Q9UEE9 299 aaPredicted RBP34.41■■■■□ 3.1
SHMT1-203ENST00000354098 AKNAQ7Z591 1439 aa34.4■■■■□ 3.1
SHMT1-203ENST00000354098 PHLDB1Q86UU1 1377 aa34.39■■■■□ 3.1
SHMT1-203ENST00000354098 COL17A1Q9UMD9 1497 aaPredicted RBP34.38■■■■□ 3.09
SHMT1-203ENST00000354098 ZNF777Q9ULD5 760 aaPredicted RBP34.38■■■■□ 3.09
SHMT1-203ENST00000354098 CFAP74Q9C0B2 1584 aa34.37■■■■□ 3.09
SHMT1-203ENST00000354098 ITSN2Q9NZM3 1697 aa34.36■■■■□ 3.09
SHMT1-203ENST00000354098 MYOM3Q5VTT5 1437 aa34.33■■■■□ 3.09
SHMT1-203ENST00000354098 KDM6BO15054 1643 aa34.32■■■■□ 3.09
SHMT1-203ENST00000354098 ZNF644Q9H582 1327 aaPredicted RBP34.31■■■■□ 3.08
SHMT1-203ENST00000354098 ADGRL1O94910 1474 aa34.31■■■■□ 3.08
SHMT1-203ENST00000354098 SAMD9LQ8IVG5 1584 aa34.29■■■■□ 3.08
SHMT1-203ENST00000354098 SCAPERQ9BY12 1400 aa34.28■■■■□ 3.08
SHMT1-203ENST00000354098 RAPGEF3O95398 923 aa34.26■■■■□ 3.08
SHMT1-203ENST00000354098 ARHGEF12Q9NZN5 1544 aa34.24■■■■□ 3.07
SHMT1-203ENST00000354098 ABCC1P33527 1531 aa34.23■■■■□ 3.07
SHMT1-203ENST00000354098 MIA2Q96PC5 1412 aa34.22■■■■□ 3.07
SHMT1-203ENST00000354098 DENND4BO75064 1496 aaPredicted RBP34.22■■■■□ 3.07
SHMT1-203ENST00000354098 HNRNPMP52272 730 aaKnown RBP eCLIP34.2■■■■□ 3.07
SHMT1-203ENST00000354098 FGD6Q6ZV73 1430 aa34.2■■■■□ 3.06
SHMT1-203ENST00000354098 CAMSAP2Q08AD1 1489 aa34.19■■■■□ 3.06
SHMT1-203ENST00000354098 SYCP2Q9BX26 1530 aa34.18■■■■□ 3.06
SHMT1-203ENST00000354098 FRMPD1Q5SYB0 1578 aa34.16■■■■□ 3.06
SHMT1-203ENST00000354098 POGZQ7Z3K3 1410 aa34.16■■■■□ 3.06
SHMT1-203ENST00000354098 KIAA1107Q9UPP5 1409 aa34.16■■■■□ 3.06
SHMT1-203ENST00000354098 AFAP1Q8N556 730 aa34.15■■■■□ 3.06
SHMT1-203ENST00000354098 PLEKHH2Q8IVE3 1493 aa34.15■■■■□ 3.06
SHMT1-203ENST00000354098 TRAPPC8Q9Y2L5 1435 aa34.15■■■■□ 3.06
SHMT1-203ENST00000354098 RICTORQ6R327 1708 aa34.14■■■■□ 3.06
SHMT1-203ENST00000354098 PTPN23Q9H3S7 1636 aa34.12■■■■□ 3.05
SHMT1-203ENST00000354098 MBD5Q9P267 1494 aa34.11■■■■□ 3.05
SHMT1-203ENST00000354098 ZNF518AQ6AHZ1 1483 aa34.08■■■■□ 3.05
SHMT1-203ENST00000354098 TCOF1Q13428 1488 aaKnown RBP34.07■■■■□ 3.04
SHMT1-203ENST00000354098 FAM50AQ14320 339 aaKnown RBP34.03■■■■□ 3.04
SHMT1-203ENST00000354098 KDM5CP41229 1560 aa34.02■■■■□ 3.04
SHMT1-203ENST00000354098 ZMYM4Q5VZL5 1548 aa34■■■■□ 3.03
SHMT1-203ENST00000354098 ARHGEF5Q12774 1597 aa33.98■■■■□ 3.03
SHMT1-203ENST00000354098 RSPH4AQ5TD94 716 aa33.97■■■■□ 3.03
SHMT1-203ENST00000354098 CCDC141Q6ZP82 1450 aa33.97■■■■□ 3.03
SHMT1-203ENST00000354098 RRBP1Q9P2E9 1410 aaKnown RBP33.95■■■■□ 3.03
SHMT1-203ENST00000354098 MYT1LQ9UL68 1186 aa33.95■■■■□ 3.03
SHMT1-203ENST00000354098 SPAG9O60271 1321 aaKnown RBP33.94■■■■□ 3.02
SHMT1-203ENST00000354098 YEATS2Q9ULM3 1422 aa33.94■■■■□ 3.02
SHMT1-203ENST00000354098 MLH3Q9UHC1 1453 aa33.93■■■■□ 3.02
SHMT1-203ENST00000354098 MAGI2Q86UL8 1455 aa33.92■■■■□ 3.02
SHMT1-203ENST00000354098 ABCC5O15440 1437 aa33.92■■■■□ 3.02
SHMT1-203ENST00000354098 HECW2Q9P2P5 1572 aa33.92■■■■□ 3.02
SHMT1-203ENST00000354098 ZFYVE16Q7Z3T8 1539 aa33.9■■■■□ 3.02
SHMT1-203ENST00000354098 DAPK1P53355 1430 aa33.89■■■■□ 3.02
SHMT1-203ENST00000354098 TSPY4P0CV99 314 aa33.89■■■■□ 3.02
SHMT1-203ENST00000354098 TSPY10P0CW01 314 aa33.89■■■■□ 3.02
SHMT1-203ENST00000354098 DNMT1P26358 1616 aaKnown RBP33.88■■■■□ 3.01
SHMT1-203ENST00000354098 KIDINS220Q9ULH0 1771 aa33.87■■■■□ 3.01
SHMT1-203ENST00000354098 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.86■■■■□ 3.01
SHMT1-203ENST00000354098 INO80Q9ULG1 1556 aaPredicted RBP33.85■■■■□ 3.01
SHMT1-203ENST00000354098 ATP7AQ04656 1500 aa33.85■■■■□ 3.01
SHMT1-203ENST00000354098 ARHGEF40Q8TER5 1519 aa33.84■■■■□ 3.01
SHMT1-203ENST00000354098 RTEL1-TNFRSF6BF6WH68 1400 aa33.82■■■■□ 3
SHMT1-203ENST00000354098 C9orf84Q5VXU9 1444 aa33.82■■■■□ 3
SHMT1-203ENST00000354098 ITGAEP38570 1179 aa33.81■■■■□ 3
SHMT1-203ENST00000354098 ABCA6Q8N139 1617 aa33.81■■■■□ 3
SHMT1-203ENST00000354098 CROCC2H7BZ55 1655 aa33.8■■■■□ 3
SHMT1-203ENST00000354098 DIP2CQ9Y2E4 1556 aa33.8■■■■□ 3
SHMT1-203ENST00000354098 CHIC2Q9UKJ5 165 aa33.8■■■■□ 3
SHMT1-203ENST00000354098 PTPRKQ15262 1439 aa33.79■■■■□ 3
SHMT1-203ENST00000354098 MAST1Q9Y2H9 1570 aa33.78■■■■□ 3
SHMT1-203ENST00000354098 ATP10AO60312 1499 aa33.77■■■■□ 3
SHMT1-203ENST00000354098 SHANK2Q9UPX8 1470 aa33.77■■■■□ 3
SHMT1-203ENST00000354098 SIGLEC1Q9BZZ2 1709 aa33.7■■■□□ 2.98
SHMT1-203ENST00000354098 RRP7BPQ9NSQ0 103 aa33.67■■■□□ 2.98
SHMT1-203ENST00000354098 ADGBQ8N7X0 1667 aa33.66■■■□□ 2.98
SHMT1-203ENST00000354098 A2MP01023 1474 aa33.66■■■□□ 2.98
SHMT1-203ENST00000354098 PLXNC1O60486 1568 aa33.65■■■□□ 2.98
SHMT1-203ENST00000354098 NCOA1Q15788 1441 aa33.64■■■□□ 2.98
SHMT1-203ENST00000354098 ARID4BQ4LE39 1312 aaPredicted RBP33.64■■■□□ 2.98
SHMT1-203ENST00000354098 ANKRD30AQ9BXX3 1397 aa33.64■■■□□ 2.98
SHMT1-203ENST00000354098 REREQ9P2R6 1566 aa33.63■■■□□ 2.97
SHMT1-203ENST00000354098 ADGRL2O95490 1459 aa33.63■■■□□ 2.97
SHMT1-203ENST00000354098 DHX29Q7Z478 1369 aaKnown RBP33.62■■■□□ 2.97
SHMT1-203ENST00000354098 KIF15Q9NS87 1388 aa33.61■■■□□ 2.97
SHMT1-203ENST00000354098 ROCK1Q13464 1354 aa33.56■■■□□ 2.96
SHMT1-203ENST00000354098 AGLP35573 1532 aa33.54■■■□□ 2.96
SHMT1-203ENST00000354098 DUOX2Q9NRD8 1548 aa33.54■■■□□ 2.96
SHMT1-203ENST00000354098 MLECQ14165 292 aa33.54■■■□□ 2.96
SHMT1-203ENST00000354098 KIF3BO15066 747 aa33.48■■■□□ 2.95
SHMT1-203ENST00000354098 BCORL1Q5H9F3 1711 aa33.45■■■□□ 2.95
SHMT1-203ENST00000354098 ERBINQ96RT1 1412 aa33.45■■■□□ 2.94
SHMT1-203ENST00000354098 ANKRD50Q9ULJ7 1429 aa33.43■■■□□ 2.94
SHMT1-203ENST00000354098 GGT6Q6P531 493 aa33.43■■■□□ 2.94
SHMT1-203ENST00000354098 KDM4FA0A1W2PPD8 638 aa33.41■■■□□ 2.94
SHMT1-203ENST00000354098 NAIPQ13075 1403 aa33.39■■■□□ 2.94
SHMT1-203ENST00000354098 EIF2AK4Q9P2K8 1649 aaKnown RBP33.39■■■□□ 2.94
SHMT1-203ENST00000354098 HFM1A2PYH4 1435 aa33.37■■■□□ 2.93
SHMT1-203ENST00000354098 ADAMTSL3P82987 1691 aa33.36■■■□□ 2.93
SHMT1-203ENST00000354098 TRIM26Q12899 539 aaPredicted RBP33.35■■■□□ 2.93
SHMT1-203ENST00000354098 GCC2Q8IWJ2 1684 aa33.32■■■□□ 2.92
SHMT1-203ENST00000354098 MADDQ8WXG6 1647 aa33.31■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms