RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 FAM13BQ9NYF5 915 aa15.3■□□□□ 0.04
COL12A1-202ENST00000345356 FAM161AQ3B820 660 aa15.29■□□□□ 0.04
COL12A1-202ENST00000345356 RWDD1Q9H446 243 aaPredicted RBP15.29■□□□□ 0.04
COL12A1-202ENST00000345356 VPS8Q8N3P4 1428 aa15.29■□□□□ 0.04
COL12A1-202ENST00000345356 SYAP1Q96A49 352 aaPredicted RBP15.29■□□□□ 0.04
COL12A1-202ENST00000345356 KTN1Q86UP2 1357 aaKnown RBP15.28■□□□□ 0.04
COL12A1-202ENST00000345356 NFKBIBQ15653 356 aa15.27■□□□□ 0.03
COL12A1-202ENST00000345356 FOXD4L1Q9NU39 408 aa15.27■□□□□ 0.03
COL12A1-202ENST00000345356 MCCP23508 829 aa15.27■□□□□ 0.03
COL12A1-202ENST00000345356 EXOC6Q8TAG9 804 aa15.27■□□□□ 0.03
COL12A1-202ENST00000345356 KANK4Q5T7N3 995 aaPredicted RBP15.26■□□□□ 0.03
COL12A1-202ENST00000345356 CFAP44Q96MT7 982 aa15.26■□□□□ 0.03
COL12A1-202ENST00000345356 SOGA1O94964 1423 aa15.25■□□□□ 0.03
COL12A1-202ENST00000345356 RALBP1Q15311 655 aa15.25■□□□□ 0.03
COL12A1-202ENST00000345356 PMFBP1Q8TBY8 1022 aa15.25■□□□□ 0.03
COL12A1-202ENST00000345356 PODXL2Q9NZ53 605 aa15.25■□□□□ 0.03
COL12A1-202ENST00000345356 ZBED9Q6R2W3 1325 aa15.24■□□□□ 0.03
COL12A1-202ENST00000345356 BAZ1BQ9UIG0 1483 aaKnown RBP15.24■□□□□ 0.03
COL12A1-202ENST00000345356 TMF1P82094 1093 aa15.23■□□□□ 0.03
COL12A1-202ENST00000345356 FAM43AQ8N2R8 423 aa15.23■□□□□ 0.03
COL12A1-202ENST00000345356 PDE3BQ13370 1112 aa15.23■□□□□ 0.03
COL12A1-202ENST00000345356 CENPQQ7L2Z9 268 aaPredicted RBP15.23■□□□□ 0.03
COL12A1-202ENST00000345356 ZNF771Q7L3S4 317 aaPredicted RBP15.23■□□□□ 0.03
COL12A1-202ENST00000345356 DHX57Q6P158 1386 aaKnown RBP15.23■□□□□ 0.03
COL12A1-202ENST00000345356 KCNJ4P48050 445 aa15.23■□□□□ 0.03
COL12A1-202ENST00000345356 PAK3O75914 559 aaPredicted RBP15.22■□□□□ 0.03
COL12A1-202ENST00000345356 RRP1P56182 461 aaKnown RBP15.22■□□□□ 0.03
COL12A1-202ENST00000345356 FGD1P98174 961 aa15.22■□□□□ 0.03
COL12A1-202ENST00000345356 U2SURPO15042 1029 aaKnown RBP15.21■□□□□ 0.03
COL12A1-202ENST00000345356 DCAF11Q8TEB1 546 aa15.21■□□□□ 0.03
COL12A1-202ENST00000345356 RB1CC1Q8TDY2 1594 aa15.21■□□□□ 0.02
COL12A1-202ENST00000345356 TAOK2Q9UL54 1235 aa15.2■□□□□ 0.02
COL12A1-202ENST00000345356 DDX49Q9Y6V7 483 aaKnown RBP15.2■□□□□ 0.02
COL12A1-202ENST00000345356 SKOR2Q2VWA4 1001 aaPredicted RBP15.2■□□□□ 0.02
COL12A1-202ENST00000345356 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.19■□□□□ 0.02
COL12A1-202ENST00000345356 PLIN1O60240 522 aa15.19■□□□□ 0.02
COL12A1-202ENST00000345356 ITPRIPQ8IWB1 547 aa15.18■□□□□ 0.02
COL12A1-202ENST00000345356 SENP3Q9H4L4 574 aaPredicted RBP15.17■□□□□ 0.02
COL12A1-202ENST00000345356 CFDP1Q9UEE9 299 aaPredicted RBP15.17■□□□□ 0.02
COL12A1-202ENST00000345356 GOLGA2Q08379 1002 aa15.17■□□□□ 0.02
COL12A1-202ENST00000345356 FOXD1Q16676 465 aa15.17■□□□□ 0.02
COL12A1-202ENST00000345356 NAP1L2Q9ULW6 460 aaPredicted RBP15.17■□□□□ 0.02
COL12A1-202ENST00000345356 CRBNQ96SW2 442 aa15.16■□□□□ 0.02
COL12A1-202ENST00000345356 APBB1O00213 710 aa15.15■□□□□ 0.02
COL12A1-202ENST00000345356 KIF27Q86VH2 1401 aa15.15■□□□□ 0.02
COL12A1-202ENST00000345356 PRKRIP1Q9H875 184 aaPredicted RBP15.15■□□□□ 0.02
COL12A1-202ENST00000345356 IPO8O15397 1037 aaKnown RBP15.14■□□□□ 0.01
COL12A1-202ENST00000345356 PHF14O94880 888 aa15.14■□□□□ 0.01
COL12A1-202ENST00000345356 OS9Q13438 667 aaPredicted RBP15.14■□□□□ 0.01
COL12A1-202ENST00000345356 CSPP1Q1MSJ5 1256 aa15.14■□□□□ 0.01
COL12A1-202ENST00000345356 NLRP13Q86W25 1043 aa15.13■□□□□ 0.01
COL12A1-202ENST00000345356 CLUAP1Q96AJ1 413 aa15.12■□□□□ 0.01
COL12A1-202ENST00000345356 MSH5O43196 834 aa15.12■□□□□ 0.01
COL12A1-202ENST00000345356 MAP7D2Q96T17 732 aa15.12■□□□□ 0.01
COL12A1-202ENST00000345356 TPM2P07951 284 aa15.11■□□□□ 0.01
COL12A1-202ENST00000345356 FOXD4L5Q5VV16 416 aaPredicted RBP15.11■□□□□ 0.01
COL12A1-202ENST00000345356 FOXD4L4Q8WXT5 416 aaPredicted RBP15.11■□□□□ 0.01
COL12A1-202ENST00000345356 FHAD1B1AJZ9 1412 aa15.11■□□□□ 0.01
COL12A1-202ENST00000345356 CHMP5Q9NZZ3 219 aa15.11■□□□□ 0.01
COL12A1-202ENST00000345356 GOLGA6L1Q8N7Z2 621 aa15.11■□□□□ 0.01
COL12A1-202ENST00000345356 R3HCC1Q9Y3T6 440 aaKnown RBP15.1■□□□□ 0.01
COL12A1-202ENST00000345356 MRE11P49959 708 aa15.1■□□□□ 0.01
COL12A1-202ENST00000345356 MORC1Q86VD1 984 aa15.1■□□□□ 0.01
COL12A1-202ENST00000345356 CENPJQ9HC77 1338 aaPredicted RBP15.1■□□□□ 0.01
COL12A1-202ENST00000345356 ESF1Q9H501 851 aaKnown RBP15.09■□□□□ 0.01
COL12A1-202ENST00000345356 ARHGAP35Q9NRY4 1499 aa15.09■□□□□ 0.01
COL12A1-202ENST00000345356 L3MBTL2Q969R5 705 aa15.09■□□□□ 0.01
COL12A1-202ENST00000345356 FRAT2O75474 233 aaPredicted RBP15.08■□□□□ 0.01
COL12A1-202ENST00000345356 MTERF4Q7Z6M4 381 aaKnown RBP15.08■□□□□ 0
COL12A1-202ENST00000345356 NOL8Q76FK4 1167 aaKnown RBP15.07■□□□□ 0
COL12A1-202ENST00000345356 MPHOSPH9Q99550 1183 aa15.07■□□□□ 0
COL12A1-202ENST00000345356 KIAA1211Q6ZU35 1233 aa15.07■□□□□ 0
COL12A1-202ENST00000345356 ST18O60284 1047 aa15.07■□□□□ 0
COL12A1-202ENST00000345356 CCDC146Q8IYE0 955 aa15.06■□□□□ 0
COL12A1-202ENST00000345356 UBE2Q2Q8WVN8 375 aa15.06■□□□□ 0
COL12A1-202ENST00000345356 PLEKHD1A6NEE1 506 aa15.05■□□□□ 0
COL12A1-202ENST00000345356 RRP9O43818 475 aaKnown RBP15.05■□□□□ 0
COL12A1-202ENST00000345356 MYBBP1AQ9BQG0 1328 aaKnown RBP15.05■□□□□ 0
COL12A1-202ENST00000345356 HTATSF1O43719 755 aaKnown RBP15.05■□□□□ 0
COL12A1-202ENST00000345356 SMC4Q9NTJ3 1288 aa15.05■□□□□ 0
COL12A1-202ENST00000345356 RBM10P98175 930 aaKnown RBP15.04■□□□□ -0
COL12A1-202ENST00000345356 TPM4P67936 248 aa15.03■□□□□ -0
COL12A1-202ENST00000345356 KIF15Q9NS87 1388 aa15.03■□□□□ -0
COL12A1-202ENST00000345356 PKD2Q13563 968 aa15.03■□□□□ -0
COL12A1-202ENST00000345356 ROCK2O75116 1388 aaKnown RBP15.03■□□□□ -0
COL12A1-202ENST00000345356 PHLDB1Q86UU1 1377 aa15.03■□□□□ -0
COL12A1-202ENST00000345356 ZNF592Q92610 1267 aa15.02□□□□□ -0.01
COL12A1-202ENST00000345356 CCDC88BA6NC98 1476 aa15.01□□□□□ -0.01
COL12A1-202ENST00000345356 NASPP49321 788 aaPredicted RBP15.01□□□□□ -0.01
COL12A1-202ENST00000345356 U2AF1L5P0DN76 240 aaPredicted RBP15.01□□□□□ -0.01
COL12A1-202ENST00000345356 U2AF1Q01081 240 aaKnown RBP eCLIP15.01□□□□□ -0.01
COL12A1-202ENST00000345356 SETQ01105 290 aaPredicted RBP15□□□□□ -0.01
COL12A1-202ENST00000345356 FMN1Q68DA7 1419 aa15□□□□□ -0.01
COL12A1-202ENST00000345356 KIF16BQ96L93 1317 aa15□□□□□ -0.01
COL12A1-202ENST00000345356 TRAK2O60296 914 aa15□□□□□ -0.01
COL12A1-202ENST00000345356 FOXD4L6Q3SYB3 417 aaPredicted RBP15□□□□□ -0.01
COL12A1-202ENST00000345356 FOXD4L3Q6VB84 417 aaPredicted RBP15□□□□□ -0.01
COL12A1-202ENST00000345356 CGNL1Q0VF96 1302 aa14.99□□□□□ -0.01
COL12A1-202ENST00000345356 COG6Q9Y2V7 657 aa14.99□□□□□ -0.01
COL12A1-202ENST00000345356 C14orf37Q86TY3 774 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms