RNA–Protein interactions for RNA: ENST00000344921.10

SMARCB1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2 BASIC

Gene SMARCB1, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-202ENST00000344921 AKNAQ7Z591 1439 aa32.52■■■□□ 2.8
SMARCB1-202ENST00000344921 ARAP3Q8WWN8 1544 aa32.52■■■□□ 2.8
SMARCB1-202ENST00000344921 CDC42BPAQ5VT25 1732 aa32.51■■■□□ 2.8
SMARCB1-202ENST00000344921 CDC42BPBQ9Y5S2 1711 aa32.51■■■□□ 2.79
SMARCB1-202ENST00000344921 PREX2Q70Z35 1606 aa32.51■■■□□ 2.79
SMARCB1-202ENST00000344921 NCOA2Q15596 1464 aa32.49■■■□□ 2.79
SMARCB1-202ENST00000344921 GPATCH8Q9UKJ3 1502 aaKnown RBP32.48■■■□□ 2.79
SMARCB1-202ENST00000344921 ZNF777Q9ULD5 760 aaPredicted RBP32.46■■■□□ 2.79
SMARCB1-202ENST00000344921 CFDP1Q9UEE9 299 aaPredicted RBP32.45■■■□□ 2.78
SMARCB1-202ENST00000344921 ADGRL1O94910 1474 aa32.44■■■□□ 2.78
SMARCB1-202ENST00000344921 RAPGEF3O95398 923 aa32.43■■■□□ 2.78
SMARCB1-202ENST00000344921 ITSN2Q9NZM3 1697 aa32.4■■■□□ 2.78
SMARCB1-202ENST00000344921 SCAPERQ9BY12 1400 aa32.4■■■□□ 2.78
SMARCB1-202ENST00000344921 DENND4BO75064 1496 aaPredicted RBP32.39■■■□□ 2.78
SMARCB1-202ENST00000344921 SAMD9LQ8IVG5 1584 aa32.3■■■□□ 2.76
SMARCB1-202ENST00000344921 PPARGC1BQ86YN6 1023 aaKnown RBP32.29■■■□□ 2.76
SMARCB1-202ENST00000344921 RICTORQ6R327 1708 aa32.29■■■□□ 2.76
SMARCB1-202ENST00000344921 ABCC1P33527 1531 aa32.28■■■□□ 2.76
SMARCB1-202ENST00000344921 FRMPD1Q5SYB0 1578 aa32.27■■■□□ 2.76
SMARCB1-202ENST00000344921 POGZQ7Z3K3 1410 aa32.27■■■□□ 2.76
SMARCB1-202ENST00000344921 ZNF644Q9H582 1327 aaPredicted RBP32.26■■■□□ 2.76
SMARCB1-202ENST00000344921 MYOM3Q5VTT5 1437 aa32.25■■■□□ 2.75
SMARCB1-202ENST00000344921 HNRNPMP52272 730 aaKnown RBP eCLIP32.25■■■□□ 2.75
SMARCB1-202ENST00000344921 AFAP1Q8N556 730 aa32.24■■■□□ 2.75
SMARCB1-202ENST00000344921 PLEKHH2Q8IVE3 1493 aa32.24■■■□□ 2.75
SMARCB1-202ENST00000344921 ZNF518AQ6AHZ1 1483 aa32.23■■■□□ 2.75
SMARCB1-202ENST00000344921 SYCP2Q9BX26 1530 aa32.23■■■□□ 2.75
SMARCB1-202ENST00000344921 ARHGEF12Q9NZN5 1544 aa32.23■■■□□ 2.75
SMARCB1-202ENST00000344921 MYT1LQ9UL68 1186 aa32.21■■■□□ 2.75
SMARCB1-202ENST00000344921 KIAA1107Q9UPP5 1409 aa32.19■■■□□ 2.74
SMARCB1-202ENST00000344921 TRAPPC8Q9Y2L5 1435 aa32.19■■■□□ 2.74
SMARCB1-202ENST00000344921 CAMSAP2Q08AD1 1489 aa32.18■■■□□ 2.74
SMARCB1-202ENST00000344921 MIA2Q96PC5 1412 aa32.17■■■□□ 2.74
SMARCB1-202ENST00000344921 ZMYM4Q5VZL5 1548 aa32.16■■■□□ 2.74
SMARCB1-202ENST00000344921 KDM5CP41229 1560 aa32.12■■■□□ 2.73
SMARCB1-202ENST00000344921 MAGI2Q86UL8 1455 aa32.11■■■□□ 2.73
SMARCB1-202ENST00000344921 ZFYVE16Q7Z3T8 1539 aa32.1■■■□□ 2.73
SMARCB1-202ENST00000344921 FGD6Q6ZV73 1430 aa32.09■■■□□ 2.73
SMARCB1-202ENST00000344921 YEATS2Q9ULM3 1422 aa32.07■■■□□ 2.73
SMARCB1-202ENST00000344921 MBD5Q9P267 1494 aa32.07■■■□□ 2.72
SMARCB1-202ENST00000344921 HECW2Q9P2P5 1572 aa32.07■■■□□ 2.72
SMARCB1-202ENST00000344921 PTPN23Q9H3S7 1636 aa32.06■■■□□ 2.72
SMARCB1-202ENST00000344921 SPAG9O60271 1321 aaKnown RBP32.06■■■□□ 2.72
SMARCB1-202ENST00000344921 ARHGEF40Q8TER5 1519 aa32.05■■■□□ 2.72
SMARCB1-202ENST00000344921 RSPH4AQ5TD94 716 aa32.05■■■□□ 2.72
SMARCB1-202ENST00000344921 MLH3Q9UHC1 1453 aa32.03■■■□□ 2.72
SMARCB1-202ENST00000344921 CCDC141Q6ZP82 1450 aa32.02■■■□□ 2.72
SMARCB1-202ENST00000344921 FAM50AQ14320 339 aaKnown RBP32■■■□□ 2.71
SMARCB1-202ENST00000344921 TSPY4P0CV99 314 aa31.99■■■□□ 2.71
SMARCB1-202ENST00000344921 TSPY10P0CW01 314 aa31.99■■■□□ 2.71
SMARCB1-202ENST00000344921 ARHGEF5Q12774 1597 aa31.99■■■□□ 2.71
SMARCB1-202ENST00000344921 ARID4BQ4LE39 1312 aaPredicted RBP31.98■■■□□ 2.71
SMARCB1-202ENST00000344921 KIDINS220Q9ULH0 1771 aa31.97■■■□□ 2.71
SMARCB1-202ENST00000344921 ATP10AO60312 1499 aa31.96■■■□□ 2.71
SMARCB1-202ENST00000344921 TCOF1Q13428 1488 aaKnown RBP31.96■■■□□ 2.71
SMARCB1-202ENST00000344921 ATP7AQ04656 1500 aa31.95■■■□□ 2.71
SMARCB1-202ENST00000344921 ABCA6Q8N139 1617 aa31.93■■■□□ 2.7
SMARCB1-202ENST00000344921 DIP2CQ9Y2E4 1556 aa31.93■■■□□ 2.7
SMARCB1-202ENST00000344921 INO80Q9ULG1 1556 aaPredicted RBP31.92■■■□□ 2.7
SMARCB1-202ENST00000344921 C9orf84Q5VXU9 1444 aa31.92■■■□□ 2.7
SMARCB1-202ENST00000344921 RTEL1-TNFRSF6BF6WH68 1400 aa31.89■■■□□ 2.7
SMARCB1-202ENST00000344921 DNMT1P26358 1616 aaKnown RBP31.84■■■□□ 2.69
SMARCB1-202ENST00000344921 ABCC5O15440 1437 aa31.84■■■□□ 2.69
SMARCB1-202ENST00000344921 DAPK1P53355 1430 aa31.84■■■□□ 2.69
SMARCB1-202ENST00000344921 SIGLEC1Q9BZZ2 1709 aa31.81■■■□□ 2.68
SMARCB1-202ENST00000344921 MLECQ14165 292 aa31.8■■■□□ 2.68
SMARCB1-202ENST00000344921 CROCC2H7BZ55 1655 aa31.8■■■□□ 2.68
SMARCB1-202ENST00000344921 MAST1Q9Y2H9 1570 aa31.8■■■□□ 2.68
SMARCB1-202ENST00000344921 KDM4FA0A1W2PPD8 638 aa31.79■■■□□ 2.68
SMARCB1-202ENST00000344921 REREQ9P2R6 1566 aa31.79■■■□□ 2.68
SMARCB1-202ENST00000344921 CHIC2Q9UKJ5 165 aa31.78■■■□□ 2.68
SMARCB1-202ENST00000344921 ADGBQ8N7X0 1667 aa31.78■■■□□ 2.68
SMARCB1-202ENST00000344921 A2MP01023 1474 aa31.78■■■□□ 2.68
SMARCB1-202ENST00000344921 SHANK2Q9UPX8 1470 aa31.77■■■□□ 2.68
SMARCB1-202ENST00000344921 ITGAEP38570 1179 aa31.75■■■□□ 2.67
SMARCB1-202ENST00000344921 RRBP1Q9P2E9 1410 aaKnown RBP31.75■■■□□ 2.67
SMARCB1-202ENST00000344921 BCORL1Q5H9F3 1711 aa31.75■■■□□ 2.67
SMARCB1-202ENST00000344921 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.73■■■□□ 2.677e-16■■■■■ 28.1
SMARCB1-202ENST00000344921 DHX29Q7Z478 1369 aaKnown RBP31.71■■■□□ 2.67
SMARCB1-202ENST00000344921 AGLP35573 1532 aa31.7■■■□□ 2.67
SMARCB1-202ENST00000344921 RRP7BPQ9NSQ0 103 aa31.7■■■□□ 2.67
SMARCB1-202ENST00000344921 PLXNC1O60486 1568 aa31.69■■■□□ 2.66
SMARCB1-202ENST00000344921 ANKRD30AQ9BXX3 1397 aa31.68■■■□□ 2.66
SMARCB1-202ENST00000344921 AEBP2Q6ZN18 517 aaPredicted RBP31.66■■■□□ 2.66
SMARCB1-202ENST00000344921 ADAMTSL3P82987 1691 aa31.65■■■□□ 2.66
SMARCB1-202ENST00000344921 KIF15Q9NS87 1388 aa31.65■■■□□ 2.66
SMARCB1-202ENST00000344921 KIF3BO15066 747 aa31.63■■■□□ 2.65
SMARCB1-202ENST00000344921 GGT6Q6P531 493 aa31.62■■■□□ 2.65
SMARCB1-202ENST00000344921 PTPRKQ15262 1439 aa31.62■■■□□ 2.65
SMARCB1-202ENST00000344921 MADDQ8WXG6 1647 aa31.62■■■□□ 2.65
SMARCB1-202ENST00000344921 NCOA1Q15788 1441 aa31.61■■■□□ 2.65
SMARCB1-202ENST00000344921 DUOX2Q9NRD8 1548 aa31.61■■■□□ 2.65
SMARCB1-202ENST00000344921 ESF1Q9H501 851 aaKnown RBP31.61■■■□□ 2.65
SMARCB1-202ENST00000344921 ADGRL2O95490 1459 aa31.59■■■□□ 2.65
SMARCB1-202ENST00000344921 FER1L4A9Z1Z3 1794 aa31.57■■■□□ 2.65
SMARCB1-202ENST00000344921 RIMS1Q86UR5 1692 aaKnown RBP31.55■■■□□ 2.64
SMARCB1-202ENST00000344921 PLPPR3Q6T4P5 718 aa31.52■■■□□ 2.64
SMARCB1-202ENST00000344921 ROCK1Q13464 1354 aa31.51■■■□□ 2.64
SMARCB1-202ENST00000344921 ERBINQ96RT1 1412 aa31.51■■■□□ 2.64
SMARCB1-202ENST00000344921 EIF2AK4Q9P2K8 1649 aaKnown RBP31.5■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms