RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 TROQ12816 1431 aaPredicted RBP20.22■□□□□ 0.83
SGCA-202ENST00000344627 MADDQ8WXG6 1647 aa20.21■□□□□ 0.83
SGCA-202ENST00000344627 PCF11O94913 1555 aaKnown RBP20.19■□□□□ 0.82
SGCA-202ENST00000344627 ZNF518AQ6AHZ1 1483 aa20.18■□□□□ 0.82
SGCA-202ENST00000344627 KIF14Q15058 1648 aa20.18■□□□□ 0.82
SGCA-202ENST00000344627 ATP10AO60312 1499 aa20.18■□□□□ 0.82
SGCA-202ENST00000344627 YEATS2Q9ULM3 1422 aa20.17■□□□□ 0.82
SGCA-202ENST00000344627 CCDC18Q5T9S5 1454 aa20.17■□□□□ 0.82
SGCA-202ENST00000344627 C9orf84Q5VXU9 1444 aa20.16■□□□□ 0.82
SGCA-202ENST00000344627 FBXO41Q8TF61 875 aa20.15■□□□□ 0.82
SGCA-202ENST00000344627 LMTK3Q96Q04 1460 aa20.15■□□□□ 0.82
SGCA-202ENST00000344627 MYO5CQ9NQX4 1742 aa20.15■□□□□ 0.82
SGCA-202ENST00000344627 CASKIN1Q8WXD9 1431 aa20.13■□□□□ 0.81
SGCA-202ENST00000344627 ARHGAP5Q13017 1502 aa20.12■□□□□ 0.81
SGCA-202ENST00000344627 RIMS1Q86UR5 1692 aaKnown RBP20.11■□□□□ 0.81
SGCA-202ENST00000344627 KDM5CP41229 1560 aa20.08■□□□□ 0.81
SGCA-202ENST00000344627 ARHGEF12Q9NZN5 1544 aa20.08■□□□□ 0.81
SGCA-202ENST00000344627 MLH3Q9UHC1 1453 aa20.07■□□□□ 0.8
SGCA-202ENST00000344627 REREQ9P2R6 1566 aa20.06■□□□□ 0.8
SGCA-202ENST00000344627 MLECQ14165 292 aa20.05■□□□□ 0.8
SGCA-202ENST00000344627 AFAP1Q8N556 730 aa20.05■□□□□ 0.8
SGCA-202ENST00000344627 FYCO1Q9BQS8 1478 aa20.05■□□□□ 0.8
SGCA-202ENST00000344627 LRRIQ1Q96JM4 1722 aa20.05■□□□□ 0.8
SGCA-202ENST00000344627 MYT1LQ9UL68 1186 aa20.04■□□□□ 0.8
SGCA-202ENST00000344627 FER1L4A9Z1Z3 1794 aa20.01■□□□□ 0.79
SGCA-202ENST00000344627 DMRT2Q9Y5R5 561 aa20.01■□□□□ 0.79
SGCA-202ENST00000344627 AGLP35573 1532 aa20■□□□□ 0.79
SGCA-202ENST00000344627 PREX2Q70Z35 1606 aa19.99■□□□□ 0.79
SGCA-202ENST00000344627 ABCC1P33527 1531 aa19.98■□□□□ 0.79
SGCA-202ENST00000344627 ESF1Q9H501 851 aaKnown RBP19.98■□□□□ 0.79
SGCA-202ENST00000344627 SIGLEC1Q9BZZ2 1709 aa19.98■□□□□ 0.79
SGCA-202ENST00000344627 HSPA2P54652 639 aa19.96■□□□□ 0.79
SGCA-202ENST00000344627 CDC42BPBQ9Y5S2 1711 aa19.96■□□□□ 0.79
SGCA-202ENST00000344627 DIP2CQ9Y2E4 1556 aa19.95■□□□□ 0.78
SGCA-202ENST00000344627 CNTLNQ9NXG0 1405 aa19.95■□□□□ 0.78
SGCA-202ENST00000344627 PLPPR3Q6T4P5 718 aa19.95■□□□□ 0.78
SGCA-202ENST00000344627 PLEKHH2Q8IVE3 1493 aa19.94■□□□□ 0.78
SGCA-202ENST00000344627 UHRF1BP1Q6BDS2 1440 aa19.93■□□□□ 0.78
SGCA-202ENST00000344627 TRAPPC8Q9Y2L5 1435 aa19.93■□□□□ 0.78
SGCA-202ENST00000344627 KIAA1107Q9UPP5 1409 aa19.93■□□□□ 0.78
SGCA-202ENST00000344627 PREX1Q8TCU6 1659 aa19.92■□□□□ 0.78
SGCA-202ENST00000344627 ITSN2Q9NZM3 1697 aa19.89■□□□□ 0.77
SGCA-202ENST00000344627 GPATCH8Q9UKJ3 1502 aaKnown RBP19.89■□□□□ 0.77
SGCA-202ENST00000344627 SETD1BQ9UPS6 1966 aaKnown RBP19.88■□□□□ 0.77
SGCA-202ENST00000344627 ABCA6Q8N139 1617 aa19.88■□□□□ 0.77
SGCA-202ENST00000344627 SPAG9O60271 1321 aaKnown RBP19.88■□□□□ 0.77
SGCA-202ENST00000344627 CEBPAP49715 358 aaPredicted RBP19.88■□□□□ 0.77
SGCA-202ENST00000344627 CERKQ8TCT0 537 aa19.88■□□□□ 0.77
SGCA-202ENST00000344627 CFDP1Q9UEE9 299 aaPredicted RBP19.88■□□□□ 0.77
SGCA-202ENST00000344627 ZNF777Q9ULD5 760 aaPredicted RBP19.87■□□□□ 0.77
SGCA-202ENST00000344627 MTUS2Q5JR59 1369 aa19.86■□□□□ 0.77
SGCA-202ENST00000344627 CCNB3Q8WWL7 1395 aa19.86■□□□□ 0.77
SGCA-202ENST00000344627 PPP6R1Q9UPN7 881 aa19.86■□□□□ 0.77
SGCA-202ENST00000344627 CEP162Q5TB80 1403 aa19.85■□□□□ 0.77
SGCA-202ENST00000344627 CDC42BPAQ5VT25 1732 aa19.85■□□□□ 0.77
SGCA-202ENST00000344627 SAMD9LQ8IVG5 1584 aa19.84■□□□□ 0.77
SGCA-202ENST00000344627 KIDINS220Q9ULH0 1771 aa19.83■□□□□ 0.77
SGCA-202ENST00000344627 LOC105371045A0A1W2PR82 267 aa19.83■□□□□ 0.77
SGCA-202ENST00000344627 NPATQ14207 1427 aa19.83■□□□□ 0.76
SGCA-202ENST00000344627 PTPRTO14522 1441 aa19.82■□□□□ 0.76
SGCA-202ENST00000344627 HNRNPMP52272 730 aaKnown RBP eCLIP19.8■□□□□ 0.76
SGCA-202ENST00000344627 SYCP2Q9BX26 1530 aa19.8■□□□□ 0.76
SGCA-202ENST00000344627 RSPH4AQ5TD94 716 aa19.79■□□□□ 0.76
SGCA-202ENST00000344627 C3P01024 1663 aa19.78■□□□□ 0.76
SGCA-202ENST00000344627 ATP7AQ04656 1500 aa19.77■□□□□ 0.76
SGCA-202ENST00000344627 A2MP01023 1474 aa19.77■□□□□ 0.76
SGCA-202ENST00000344627 MROH2AA6NES4 1674 aa19.77■□□□□ 0.76
SGCA-202ENST00000344627 RTEL1-TNFRSF6BF6WH68 1400 aa19.76■□□□□ 0.75
SGCA-202ENST00000344627 EHBP1L1Q8N3D4 1523 aa19.76■□□□□ 0.75
SGCA-202ENST00000344627 ZMYM3Q14202 1370 aa19.76■□□□□ 0.75
SGCA-202ENST00000344627 PLXNC1O60486 1568 aa19.74■□□□□ 0.75
SGCA-202ENST00000344627 INO80Q9ULG1 1556 aaPredicted RBP19.73■□□□□ 0.75
SGCA-202ENST00000344627 NCOA1Q15788 1441 aa19.71■□□□□ 0.75
SGCA-202ENST00000344627 STRCQ7RTU9 1775 aa19.71■□□□□ 0.75
SGCA-202ENST00000344627 IQSEC2Q5JU85 1478 aa19.7■□□□□ 0.74
SGCA-202ENST00000344627 MBD5Q9P267 1494 aa19.69■□□□□ 0.74
SGCA-202ENST00000344627 PKD2Q13563 968 aa19.68■□□□□ 0.74
SGCA-202ENST00000344627 DHX29Q7Z478 1369 aaKnown RBP19.68■□□□□ 0.74
SGCA-202ENST00000344627 FAM135AQ9P2D6 1515 aa19.67■□□□□ 0.74
SGCA-202ENST00000344627 TIAM1Q13009 1591 aa19.67■□□□□ 0.74
SGCA-202ENST00000344627 GGT6Q6P531 493 aa19.67■□□□□ 0.74
SGCA-202ENST00000344627 ADGBQ8N7X0 1667 aa19.67■□□□□ 0.74
SGCA-202ENST00000344627 PLA2R1Q13018 1463 aa19.66■□□□□ 0.74
SGCA-202ENST00000344627 ZNF644Q9H582 1327 aaPredicted RBP19.65■□□□□ 0.74
SGCA-202ENST00000344627 PTPRKQ15262 1439 aa19.64■□□□□ 0.73
SGCA-202ENST00000344627 SUPT6HQ7KZ85 1726 aaKnown RBP19.64■□□□□ 0.73
SGCA-202ENST00000344627 CCDC141Q6ZP82 1450 aa19.63■□□□□ 0.73
SGCA-202ENST00000344627 CAMSAP1Q5T5Y3 1602 aa19.62■□□□□ 0.73
SGCA-202ENST00000344627 VPS8Q8N3P4 1428 aa19.61■□□□□ 0.73
SGCA-202ENST00000344627 TSPY4P0CV99 314 aa19.61■□□□□ 0.73
SGCA-202ENST00000344627 TSPY10P0CW01 314 aa19.61■□□□□ 0.73
SGCA-202ENST00000344627 NCOA2Q15596 1464 aa19.6■□□□□ 0.73
SGCA-202ENST00000344627 CLTCQ00610 1675 aaKnown RBP19.59■□□□□ 0.73
SGCA-202ENST00000344627 ZNF142P52746 1687 aaPredicted RBP19.58■□□□□ 0.72
SGCA-202ENST00000344627 LTBP4Q8N2S1 1624 aa19.58■□□□□ 0.72
SGCA-202ENST00000344627 CEP170BQ9Y4F5 1589 aaPredicted RBP19.57■□□□□ 0.72
SGCA-202ENST00000344627 CAMSAP2Q08AD1 1489 aa19.56■□□□□ 0.72
SGCA-202ENST00000344627 TCOF1Q13428 1488 aaKnown RBP19.56■□□□□ 0.72
SGCA-202ENST00000344627 KIF3BO15066 747 aa19.56■□□□□ 0.72
SGCA-202ENST00000344627 MAP3K1Q13233 1512 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms