RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 RPAINQ86UA6 219 aa4.78□□□□□ -1.64
SYNE2-202ENST00000344113 HMGN5P82970 282 aaKnown RBP4.78□□□□□ -1.64
SYNE2-202ENST00000344113 CCDC9Q9Y3X0 531 aaKnown RBP4.78□□□□□ -1.64
SYNE2-202ENST00000344113 TEX2Q8IWB9 1127 aa4.78□□□□□ -1.64
SYNE2-202ENST00000344113 SMAP1Q8IYB5 467 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-202ENST00000344113 LETM1O95202 739 aaPredicted RBP4.77□□□□□ -1.65
SYNE2-202ENST00000344113 DHX37Q8IY37 1157 aaKnown RBP4.77□□□□□ -1.65
SYNE2-202ENST00000344113 SETSIPP0DME0 302 aa4.77□□□□□ -1.65
SYNE2-202ENST00000344113 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.77□□□□□ -1.65
SYNE2-202ENST00000344113 FTSJ3Q8IY81 847 aaKnown RBP4.77□□□□□ -1.65
SYNE2-202ENST00000344113 USP8P40818 1118 aa4.77□□□□□ -1.65
SYNE2-202ENST00000344113 KIAA2012Q0VF49 1180 aa4.77□□□□□ -1.65
SYNE2-202ENST00000344113 WASHC2AQ641Q2 1341 aa4.77□□□□□ -1.65
SYNE2-202ENST00000344113 IRX6P78412 446 aaPredicted RBP4.76□□□□□ -1.65
SYNE2-202ENST00000344113 CLCN1P35523 988 aa4.76□□□□□ -1.65
SYNE2-202ENST00000344113 AAMPQ13685 434 aa4.76□□□□□ -1.65
SYNE2-202ENST00000344113 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.76□□□□□ -1.65
SYNE2-202ENST00000344113 CASC1Q6TDU7 716 aa4.76□□□□□ -1.65
SYNE2-202ENST00000344113 CC2D1BQ5T0F9 858 aaKnown RBP4.76□□□□□ -1.65
SYNE2-202ENST00000344113 DNAJC2Q99543 621 aaKnown RBP4.76□□□□□ -1.65
SYNE2-202ENST00000344113 TACO1Q9BSH4 297 aaKnown RBP4.75□□□□□ -1.65
SYNE2-202ENST00000344113 MNS1Q8NEH6 495 aa4.75□□□□□ -1.65
SYNE2-202ENST00000344113 ZRSR1Q15695 479 aaKnown RBP4.75□□□□□ -1.65
SYNE2-202ENST00000344113 HMMRO75330 724 aa4.74□□□□□ -1.65
SYNE2-202ENST00000344113 PLCD4Q9BRC7 762 aa4.74□□□□□ -1.65
SYNE2-202ENST00000344113 PAIP2Q9BPZ3 127 aaKnown RBP4.74□□□□□ -1.65
SYNE2-202ENST00000344113 FAM107BQ9H098 131 aa4.74□□□□□ -1.65
SYNE2-202ENST00000344113 PUS7Q96PZ0 661 aaKnown RBP4.74□□□□□ -1.65
SYNE2-202ENST00000344113 YY1AP1Q9H869 796 aa4.74□□□□□ -1.65
SYNE2-202ENST00000344113 WRNQ14191 1432 aaPredicted RBP eCLIP4.73□□□□□ -1.65
SYNE2-202ENST00000344113 CAVIN1Q6NZI2 390 aaKnown RBP4.73□□□□□ -1.65
SYNE2-202ENST00000344113 KNSTRNQ9Y448 316 aa4.73□□□□□ -1.65
SYNE2-202ENST00000344113 SYAP1Q96A49 352 aaPredicted RBP4.73□□□□□ -1.65
SYNE2-202ENST00000344113 NINLQ9Y2I6 1382 aa4.72□□□□□ -1.65
SYNE2-202ENST00000344113 GBP4Q96PP9 640 aa4.72□□□□□ -1.65
SYNE2-202ENST00000344113 PATL2C9JE40 543 aaKnown RBP4.72□□□□□ -1.65
SYNE2-202ENST00000344113 SKOR2Q2VWA4 1001 aaPredicted RBP4.72□□□□□ -1.65
SYNE2-202ENST00000344113 DEF6Q9H4E7 631 aa4.72□□□□□ -1.65
SYNE2-202ENST00000344113 MSH5O43196 834 aa4.71□□□□□ -1.65
SYNE2-202ENST00000344113 CCDC144AA2RUR9 1427 aa4.71□□□□□ -1.66
SYNE2-202ENST00000344113 WDR43Q15061 677 aaKnown RBP eCLIP4.71□□□□□ -1.66
SYNE2-202ENST00000344113 GOLGA6L10A6NI86 522 aa4.71□□□□□ -1.66
SYNE2-202ENST00000344113 NGEFQ8N5V2 710 aa4.71□□□□□ -1.66
SYNE2-202ENST00000344113 ACBD3Q9H3P7 528 aa4.7□□□□□ -1.66
SYNE2-202ENST00000344113 DHX8Q14562 1220 aaKnown RBP4.7□□□□□ -1.66
SYNE2-202ENST00000344113 HSPA5P11021 654 aaKnown RBP4.7□□□□□ -1.66
SYNE2-202ENST00000344113 CAGE1Q8TC20 777 aa4.7□□□□□ -1.66
SYNE2-202ENST00000344113 BSDC1Q9NW68 430 aaPredicted RBP4.7□□□□□ -1.66
SYNE2-202ENST00000344113 KIF3AQ9Y496 699 aa4.7□□□□□ -1.66
SYNE2-202ENST00000344113 RDXP35241 583 aaKnown RBP4.7□□□□□ -1.66
SYNE2-202ENST00000344113 INCENPQ9NQS7 918 aa4.7□□□□□ -1.66
SYNE2-202ENST00000344113 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.7□□□□□ -1.66
SYNE2-202ENST00000344113 PLCD3Q8N3E9 789 aa4.7□□□□□ -1.66
SYNE2-202ENST00000344113 DYNC1I1O14576 645 aa4.7□□□□□ -1.66
SYNE2-202ENST00000344113 BRPF3Q9ULD4 1205 aa4.69□□□□□ -1.66
SYNE2-202ENST00000344113 MAPK8IP2Q13387 824 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-202ENST00000344113 SETDB1Q15047 1291 aa4.69□□□□□ -1.66
SYNE2-202ENST00000344113 CHMP4BQ9H444 224 aaKnown RBP4.69□□□□□ -1.66
SYNE2-202ENST00000344113 CALCOCO1Q9P1Z2 691 aa4.69□□□□□ -1.66
SYNE2-202ENST00000344113 MYH16Q9H6N6 1097 aa4.69□□□□□ -1.66
SYNE2-202ENST00000344113 CC2D2BQ6DHV5 1058 aa4.69□□□□□ -1.66
SYNE2-202ENST00000344113 PLPPR3Q6T4P5 718 aa4.69□□□□□ -1.66
SYNE2-202ENST00000344113 FEZ1Q99689 392 aa4.69□□□□□ -1.66
SYNE2-202ENST00000344113 MRE11P49959 708 aa4.68□□□□□ -1.66
SYNE2-202ENST00000344113 NUTM1Q86Y26 1132 aa4.68□□□□□ -1.66
SYNE2-202ENST00000344113 RALBP1Q15311 655 aa4.68□□□□□ -1.66
SYNE2-202ENST00000344113 CHRM1P11229 460 aaPredicted RBP4.68□□□□□ -1.66
SYNE2-202ENST00000344113 CDR1P51861 262 aa4.68□□□□□ -1.66
SYNE2-202ENST00000344113 KIF1CO43896 1103 aaKnown RBP4.68□□□□□ -1.66
SYNE2-202ENST00000344113 TICAM2Q86XR7 235 aa4.68□□□□□ -1.66
SYNE2-202ENST00000344113 MFAP1P55081 439 aaKnown RBP4.68□□□□□ -1.66
SYNE2-202ENST00000344113 DDX11L8A8MPP1 907 aa4.68□□□□□ -1.66
SYNE2-202ENST00000344113 HSP90AB3PQ58FF7 597 aa4.68□□□□□ -1.66
SYNE2-202ENST00000344113 DIAPH3Q9NSV4 1193 aa4.68□□□□□ -1.66
SYNE2-202ENST00000344113 SWAP70Q9UH65 585 aa4.68□□□□□ -1.66
SYNE2-202ENST00000344113 GEMIN8Q9NWZ8 242 aaKnown RBP4.68□□□□□ -1.66
SYNE2-202ENST00000344113 HSP90B2PQ58FF3 399 aa4.68□□□□□ -1.66
SYNE2-202ENST00000344113 CHMP4AQ9BY43 222 aa4.67□□□□□ -1.66
SYNE2-202ENST00000344113 IRX3P78415 501 aaPredicted RBP4.67□□□□□ -1.66
SYNE2-202ENST00000344113 EFCC1Q9HA90 598 aa4.67□□□□□ -1.66
SYNE2-202ENST00000344113 SRPK2P78362 688 aaKnown RBP4.67□□□□□ -1.66
SYNE2-202ENST00000344113 POLR3GO15318 223 aaPredicted RBP4.67□□□□□ -1.66
SYNE2-202ENST00000344113 DYDC1Q8WWB3 177 aa4.67□□□□□ -1.66
SYNE2-202ENST00000344113 TRDNQ13061 729 aa4.67□□□□□ -1.66
SYNE2-202ENST00000344113 CCDC191Q8NCU4 936 aa4.67□□□□□ -1.66
SYNE2-202ENST00000344113 TMX4Q9H1E5 349 aaPredicted RBP4.67□□□□□ -1.66
SYNE2-202ENST00000344113 KAT6BQ8WYB5 2073 aa4.67□□□□□ -1.66
SYNE2-202ENST00000344113 TMCO5BA8MYB1 307 aa4.66□□□□□ -1.66
SYNE2-202ENST00000344113 NBPF20Q3BBV1 942 aa4.66□□□□□ -1.66
SYNE2-202ENST00000344113 ZMYM3Q14202 1370 aa4.66□□□□□ -1.66
SYNE2-202ENST00000344113 BBXQ8WY36 941 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-202ENST00000344113 SH3BGRP55822 239 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-202ENST00000344113 MMP14P50281 582 aa4.66□□□□□ -1.66
SYNE2-202ENST00000344113 UBTFP17480 764 aaKnown RBP4.66□□□□□ -1.66
SYNE2-202ENST00000344113 BRMS1Q9HCU9 246 aa4.66□□□□□ -1.66
SYNE2-202ENST00000344113 SARNPP82979 210 aaKnown RBP4.66□□□□□ -1.66
SYNE2-202ENST00000344113 ARGLU1Q9NWB6 273 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-202ENST00000344113 LIG1P18858 919 aa4.66□□□□□ -1.66
SYNE2-202ENST00000344113 TMEM132AQ24JP5 1023 aa4.66□□□□□ -1.66
SYNE2-202ENST00000344113 FYB1O15117 783 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms