RNA–Protein interactions for RNA: ENST00000341372.7

TPM3-207, Transcript of tropomyosin 3, humanhuman

TSL 5 BASIC

Gene TPM3, Length 2,007 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-207ENST00000341372 CASKIN1Q8WXD9 1431 aa16.53■□□□□ 0.24
TPM3-207ENST00000341372 ARID3CA6NKF2 412 aa16.53■□□□□ 0.24
TPM3-207ENST00000341372 MAGI3Q5TCQ9 1506 aa16.51■□□□□ 0.23
TPM3-207ENST00000341372 FYCO1Q9BQS8 1478 aa16.51■□□□□ 0.23
TPM3-207ENST00000341372 TEX14Q8IWB6 1497 aa16.5■□□□□ 0.23
TPM3-207ENST00000341372 CCDC18Q5T9S5 1454 aa16.48■□□□□ 0.23
TPM3-207ENST00000341372 CD109Q6YHK3 1445 aa16.48■□□□□ 0.23
TPM3-207ENST00000341372 GTF3C3Q9Y5Q9 886 aa16.48■□□□□ 0.23
TPM3-207ENST00000341372 KDM6BO15054 1643 aa16.48■□□□□ 0.23
TPM3-207ENST00000341372 LOC105371045A0A1W2PR82 267 aa16.46■□□□□ 0.23
TPM3-207ENST00000341372 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.46■□□□□ 0.23
TPM3-207ENST00000341372 HNRNPUL2Q1KMD3 747 aaKnown RBP16.46■□□□□ 0.23
TPM3-207ENST00000341372 KCNH8Q96L42 1107 aa16.46■□□□□ 0.23
TPM3-207ENST00000341372 PLEKHD1A6NEE1 506 aa16.45■□□□□ 0.22
TPM3-207ENST00000341372 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.44■□□□□ 0.223e-7■□□□□ 8.5
TPM3-207ENST00000341372 ATF5Q9Y2D1 282 aaPredicted RBP16.43■□□□□ 0.22
TPM3-207ENST00000341372 PKD2Q13563 968 aa16.43■□□□□ 0.22
TPM3-207ENST00000341372 FBXO3Q9UK99 471 aa16.43■□□□□ 0.22
TPM3-207ENST00000341372 TTC37Q6PGP7 1564 aa16.42■□□□□ 0.22
TPM3-207ENST00000341372 TROQ12816 1431 aaPredicted RBP16.42■□□□□ 0.22
TPM3-207ENST00000341372 KIF14Q15058 1648 aa16.4■□□□□ 0.22
TPM3-207ENST00000341372 ATP1B4Q9UN42 357 aaPredicted RBP16.4■□□□□ 0.22
TPM3-207ENST00000341372 CDK11AQ9UQ88 783 aaPredicted RBP16.4■□□□□ 0.22
TPM3-207ENST00000341372 COL17A1Q9UMD9 1497 aaPredicted RBP16.39■□□□□ 0.21
TPM3-207ENST00000341372 NEO1Q92859 1461 aa16.38■□□□□ 0.21
TPM3-207ENST00000341372 ARAP3Q8WWN8 1544 aa16.37■□□□□ 0.21
TPM3-207ENST00000341372 PHLDB1Q86UU1 1377 aa16.37■□□□□ 0.21
TPM3-207ENST00000341372 VPS8Q8N3P4 1428 aa16.36■□□□□ 0.21
TPM3-207ENST00000341372 CFAP74Q9C0B2 1584 aa16.36■□□□□ 0.21
TPM3-207ENST00000341372 MYO5CQ9NQX4 1742 aa16.34■□□□□ 0.21
TPM3-207ENST00000341372 HOXD11P31277 338 aaPredicted RBP16.33■□□□□ 0.21
TPM3-207ENST00000341372 PLCH2O75038 1416 aa16.33■□□□□ 0.2
TPM3-207ENST00000341372 VASPP50552 380 aaPredicted RBP16.32■□□□□ 0.2
TPM3-207ENST00000341372 PAXIP1Q6ZW49 1069 aaPredicted RBP16.32■□□□□ 0.2
TPM3-207ENST00000341372 IFNLR1Q8IU57 520 aaPredicted RBP16.32■□□□□ 0.2
TPM3-207ENST00000341372 FANCAO15360 1455 aa16.31■□□□□ 0.2
TPM3-207ENST00000341372 PREX2Q70Z35 1606 aa16.29■□□□□ 0.2
TPM3-207ENST00000341372 EHBP1L1Q8N3D4 1523 aa16.29■□□□□ 0.2
TPM3-207ENST00000341372 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.29■□□□□ 0.2
TPM3-207ENST00000341372 HOMEZQ8IX15 550 aa16.28■□□□□ 0.2
TPM3-207ENST00000341372 TIAM1Q13009 1591 aa16.28■□□□□ 0.2
TPM3-207ENST00000341372 FRMPD1Q5SYB0 1578 aa16.28■□□□□ 0.2
TPM3-207ENST00000341372 BBXQ8WY36 941 aaPredicted RBP16.28■□□□□ 0.2
TPM3-207ENST00000341372 CDC42BPBQ9Y5S2 1711 aa16.27■□□□□ 0.2
TPM3-207ENST00000341372 AKNAQ7Z591 1439 aa16.27■□□□□ 0.2
TPM3-207ENST00000341372 MAP3K1Q13233 1512 aa16.27■□□□□ 0.19
TPM3-207ENST00000341372 CDC42BPAQ5VT25 1732 aa16.27■□□□□ 0.19
TPM3-207ENST00000341372 CFAP44Q96MT7 982 aa16.26■□□□□ 0.19
TPM3-207ENST00000341372 RICTORQ6R327 1708 aa16.26■□□□□ 0.19
TPM3-207ENST00000341372 MTUS2Q5JR59 1369 aa16.24■□□□□ 0.19
TPM3-207ENST00000341372 DENND4BO75064 1496 aaPredicted RBP16.23■□□□□ 0.19
TPM3-207ENST00000341372 ARHGAP5Q13017 1502 aa16.23■□□□□ 0.19
TPM3-207ENST00000341372 ADGRL1O94910 1474 aa16.22■□□□□ 0.19
TPM3-207ENST00000341372 ZMYM4Q5VZL5 1548 aa16.22■□□□□ 0.19
TPM3-207ENST00000341372 GPATCH8Q9UKJ3 1502 aaKnown RBP16.21■□□□□ 0.19
TPM3-207ENST00000341372 EFCAB2Q5VUJ9 269 aa16.2■□□□□ 0.18
TPM3-207ENST00000341372 POGZQ7Z3K3 1410 aa16.2■□□□□ 0.18
TPM3-207ENST00000341372 ABCC1P33527 1531 aa16.19■□□□□ 0.18
TPM3-207ENST00000341372 SUPT6HQ7KZ85 1726 aaKnown RBP16.19■□□□□ 0.18
TPM3-207ENST00000341372 TSHZ2Q9NRE2 1034 aa16.19■□□□□ 0.18
TPM3-207ENST00000341372 LRRC9Q6ZRR7 1453 aa16.19■□□□□ 0.18
TPM3-207ENST00000341372 ITSN2Q9NZM3 1697 aa16.18■□□□□ 0.18
TPM3-207ENST00000341372 SCAPERQ9BY12 1400 aa16.18■□□□□ 0.18
TPM3-207ENST00000341372 ERICH6Q7L0X2 663 aa16.18■□□□□ 0.18
TPM3-207ENST00000341372 RAPGEF3O95398 923 aa16.17■□□□□ 0.18
TPM3-207ENST00000341372 ARHGEF40Q8TER5 1519 aa16.17■□□□□ 0.18
TPM3-207ENST00000341372 KDM5CP41229 1560 aa16.16■□□□□ 0.18
TPM3-207ENST00000341372 SAMD9LQ8IVG5 1584 aa16.16■□□□□ 0.18
TPM3-207ENST00000341372 NCOA2Q15596 1464 aa16.15■□□□□ 0.18
TPM3-207ENST00000341372 TMEM132AQ24JP5 1023 aa16.15■□□□□ 0.18
TPM3-207ENST00000341372 CCNB3Q8WWL7 1395 aa16.15■□□□□ 0.18
TPM3-207ENST00000341372 MAGI2Q86UL8 1455 aa16.15■□□□□ 0.18
TPM3-207ENST00000341372 ZNF518AQ6AHZ1 1483 aa16.14■□□□□ 0.17
TPM3-207ENST00000341372 ARHGEF12Q9NZN5 1544 aa16.13■□□□□ 0.17
TPM3-207ENST00000341372 ZFYVE16Q7Z3T8 1539 aa16.11■□□□□ 0.17
TPM3-207ENST00000341372 PLEKHH2Q8IVE3 1493 aa16.11■□□□□ 0.17
TPM3-207ENST00000341372 KIAA1107Q9UPP5 1409 aa16.1■□□□□ 0.17
TPM3-207ENST00000341372 SYCP2Q9BX26 1530 aa16.1■□□□□ 0.17
TPM3-207ENST00000341372 HECW2Q9P2P5 1572 aa16.1■□□□□ 0.17
TPM3-207ENST00000341372 KANK4Q5T7N3 995 aaPredicted RBP16.09■□□□□ 0.17
TPM3-207ENST00000341372 TRAPPC8Q9Y2L5 1435 aa16.08■□□□□ 0.17
TPM3-207ENST00000341372 CFDP1Q9UEE9 299 aaPredicted RBP16.08■□□□□ 0.16
TPM3-207ENST00000341372 YEATS2Q9ULM3 1422 aa16.08■□□□□ 0.16
TPM3-207ENST00000341372 MLH3Q9UHC1 1453 aa16.08■□□□□ 0.16
TPM3-207ENST00000341372 SPDYE4A6NLX3 237 aa16.06■□□□□ 0.16
TPM3-207ENST00000341372 PROM2Q8N271 834 aa16.06■□□□□ 0.16
TPM3-207ENST00000341372 KDM4FA0A1W2PPD8 638 aa16.05■□□□□ 0.16
TPM3-207ENST00000341372 DIP2CQ9Y2E4 1556 aa16.05■□□□□ 0.16
TPM3-207ENST00000341372 NBR1Q14596 966 aa16.04■□□□□ 0.16
TPM3-207ENST00000341372 KIDINS220Q9ULH0 1771 aa16.04■□□□□ 0.16
TPM3-207ENST00000341372 SIGLEC1Q9BZZ2 1709 aa16.04■□□□□ 0.16
TPM3-207ENST00000341372 REREQ9P2R6 1566 aa16.04■□□□□ 0.16
TPM3-207ENST00000341372 MBD5Q9P267 1494 aa16.04■□□□□ 0.16
TPM3-207ENST00000341372 AFAP1Q8N556 730 aa16.04■□□□□ 0.16
TPM3-207ENST00000341372 ABCA6Q8N139 1617 aa16.04■□□□□ 0.16
TPM3-207ENST00000341372 CAMSAP2Q08AD1 1489 aa16.03■□□□□ 0.16
TPM3-207ENST00000341372 APLP2Q06481 763 aa16.03■□□□□ 0.16
TPM3-207ENST00000341372 INO80Q9ULG1 1556 aaPredicted RBP16.03■□□□□ 0.16
TPM3-207ENST00000341372 MYOM3Q5VTT5 1437 aa16.03■□□□□ 0.16
TPM3-207ENST00000341372 ZNF777Q9ULD5 760 aaPredicted RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms