RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 FMN1Q68DA7 1419 aa17.62■□□□□ 0.41
RTN4-202ENST00000337526 TCERG1O14776 1098 aaKnown RBP17.62■□□□□ 0.41
RTN4-202ENST00000337526 A0A0G2JS52 829 aa17.61■□□□□ 0.41
RTN4-202ENST00000337526 HSCBQ8IWL3 235 aa17.6■□□□□ 0.41
RTN4-202ENST00000337526 NUP155O75694 1391 aa17.6■□□□□ 0.41
RTN4-202ENST00000337526 DHX57Q6P158 1386 aaKnown RBP17.6■□□□□ 0.41
RTN4-202ENST00000337526 ZRSR1Q15695 479 aaKnown RBP17.59■□□□□ 0.41
RTN4-202ENST00000337526 SMARCA4P51532 1647 aa17.59■□□□□ 0.41
RTN4-202ENST00000337526 SRPK2P78362 688 aaKnown RBP17.58■□□□□ 0.4
RTN4-202ENST00000337526 ARID4BQ4LE39 1312 aaPredicted RBP17.57■□□□□ 0.4
RTN4-202ENST00000337526 TDRD9Q8NDG6 1382 aaKnown RBP17.57■□□□□ 0.4
RTN4-202ENST00000337526 KANK1Q14678 1352 aa17.57■□□□□ 0.4
RTN4-202ENST00000337526 PLCB2Q00722 1185 aa17.57■□□□□ 0.4
RTN4-202ENST00000337526 ROCK2O75116 1388 aaKnown RBP17.56■□□□□ 0.4
RTN4-202ENST00000337526 SPRYD3Q8NCJ5 442 aa17.56■□□□□ 0.4
RTN4-202ENST00000337526 RAPGEF2Q9Y4G8 1499 aa17.56■□□□□ 0.4
RTN4-202ENST00000337526 SAFB2Q14151 953 aaKnown RBP eCLIP17.56■□□□□ 0.48e-8■■■□□ 19.2
RTN4-202ENST00000337526 WIZO95785 1651 aa17.53■□□□□ 0.4
RTN4-202ENST00000337526 L1TD1Q5T7N2 865 aaKnown RBP17.53■□□□□ 0.4
RTN4-202ENST00000337526 NLRP13Q86W25 1043 aa17.53■□□□□ 0.4
RTN4-202ENST00000337526 NCAPD3P42695 1498 aa17.53■□□□□ 0.4
RTN4-202ENST00000337526 IPO9Q96P70 1041 aaKnown RBP17.53■□□□□ 0.4
RTN4-202ENST00000337526 ANKRD30AQ9BXX3 1397 aa17.52■□□□□ 0.39
RTN4-202ENST00000337526 TOP2AP11388 1531 aaKnown RBP17.51■□□□□ 0.39
RTN4-202ENST00000337526 U2AF1L5P0DN76 240 aaPredicted RBP17.51■□□□□ 0.39
RTN4-202ENST00000337526 U2AF1Q01081 240 aaKnown RBP eCLIP17.51■□□□□ 0.394e-6■□□□□ 9.4
RTN4-202ENST00000337526 OS9Q13438 667 aaPredicted RBP17.51■□□□□ 0.39
RTN4-202ENST00000337526 FHOD3Q2V2M9 1422 aa17.5■□□□□ 0.39
RTN4-202ENST00000337526 IPO8O15397 1037 aaKnown RBP17.5■□□□□ 0.39
RTN4-202ENST00000337526 SLKQ9H2G2 1235 aaPredicted RBP17.5■□□□□ 0.39
RTN4-202ENST00000337526 GGT6Q6P531 493 aa17.49■□□□□ 0.39
RTN4-202ENST00000337526 DNAJC5BQ9UF47 199 aa17.49■□□□□ 0.39
RTN4-202ENST00000337526 PDE3BQ13370 1112 aa17.49■□□□□ 0.39
RTN4-202ENST00000337526 LMOD2Q6P5Q4 547 aa17.49■□□□□ 0.39
RTN4-202ENST00000337526 RUSC2Q8N2Y8 1516 aa17.49■□□□□ 0.39
RTN4-202ENST00000337526 KCNJ4P48050 445 aa17.49■□□□□ 0.39
RTN4-202ENST00000337526 RWDD1Q9H446 243 aaPredicted RBP17.49■□□□□ 0.39
RTN4-202ENST00000337526 GOLGA2Q08379 1002 aa17.48■□□□□ 0.39
RTN4-202ENST00000337526 HAP1P54257 671 aaPredicted RBP17.48■□□□□ 0.39
RTN4-202ENST00000337526 FGD1P98174 961 aa17.47■□□□□ 0.39
RTN4-202ENST00000337526 SOX12O15370 315 aa17.47■□□□□ 0.39
RTN4-202ENST00000337526 STK26Q9P289 416 aa17.46■□□□□ 0.39
RTN4-202ENST00000337526 CDK11BP21127 795 aaKnown RBP17.46■□□□□ 0.39
RTN4-202ENST00000337526 CARMIL2Q6F5E8 1435 aa17.46■□□□□ 0.39
RTN4-202ENST00000337526 PRKRIP1Q9H875 184 aaPredicted RBP17.46■□□□□ 0.39
RTN4-202ENST00000337526 EFCAB2Q5VUJ9 269 aa17.44■□□□□ 0.38
RTN4-202ENST00000337526 CFAP44Q96MT7 982 aa17.44■□□□□ 0.38
RTN4-202ENST00000337526 ITPRIPQ8IWB1 547 aa17.43■□□□□ 0.38
RTN4-202ENST00000337526 ST20-MTHFSA0A0A6YYL1 179 aa17.42■□□□□ 0.38
RTN4-202ENST00000337526 APBB1O00213 710 aa17.42■□□□□ 0.38
RTN4-202ENST00000337526 GOLGA6L4A6NEF3 574 aa17.42■□□□□ 0.38
RTN4-202ENST00000337526 GZF1Q9H116 711 aaPredicted RBP17.42■□□□□ 0.38
RTN4-202ENST00000337526 TRHP20396 242 aaPredicted RBP17.42■□□□□ 0.38
RTN4-202ENST00000337526 MCCP23508 829 aa17.41■□□□□ 0.38
RTN4-202ENST00000337526 MSNP26038 577 aaKnown RBP17.41■□□□□ 0.38
RTN4-202ENST00000337526 HDGFL2Q7Z4V5 671 aaPredicted RBP17.41■□□□□ 0.38
RTN4-202ENST00000337526 HNRNPMP52272 730 aaKnown RBP eCLIP17.41■□□□□ 0.387e-7■■■■□ 22.8
RTN4-202ENST00000337526 FANCD2Q9BXW9 1451 aa17.41■□□□□ 0.38
RTN4-202ENST00000337526 PMFBP1Q8TBY8 1022 aa17.41■□□□□ 0.38
RTN4-202ENST00000337526 CC2D2AQ9P2K1 1620 aa17.41■□□□□ 0.38
RTN4-202ENST00000337526 CLUAP1Q96AJ1 413 aa17.4■□□□□ 0.38
RTN4-202ENST00000337526 GBP4Q96PP9 640 aa17.4■□□□□ 0.38
RTN4-202ENST00000337526 CCDC146Q8IYE0 955 aa17.39■□□□□ 0.37
RTN4-202ENST00000337526 TAOK2Q9UL54 1235 aa17.39■□□□□ 0.37
RTN4-202ENST00000337526 HDGFP51858 240 aaKnown RBP17.38■□□□□ 0.37
RTN4-202ENST00000337526 RTF1Q92541 710 aaKnown RBP17.38■□□□□ 0.37
RTN4-202ENST00000337526 MLECQ14165 292 aa17.38■□□□□ 0.37
RTN4-202ENST00000337526 MYBBP1AQ9BQG0 1328 aaKnown RBP17.37■□□□□ 0.37
RTN4-202ENST00000337526 CALD1Q05682 793 aaKnown RBP17.37■□□□□ 0.37
RTN4-202ENST00000337526 NAP1L2Q9ULW6 460 aaPredicted RBP17.37■□□□□ 0.37
RTN4-202ENST00000337526 SMC4Q9NTJ3 1288 aa17.37■□□□□ 0.37
RTN4-202ENST00000337526 ZBED9Q6R2W3 1325 aa17.37■□□□□ 0.37
RTN4-202ENST00000337526 KIF15Q9NS87 1388 aa17.36■□□□□ 0.37
RTN4-202ENST00000337526 RSPH4AQ5TD94 716 aa17.36■□□□□ 0.37
RTN4-202ENST00000337526 KIF3BO15066 747 aa17.36■□□□□ 0.37
RTN4-202ENST00000337526 MFAP1P55081 439 aaKnown RBP17.36■□□□□ 0.37
RTN4-202ENST00000337526 CENPJQ9HC77 1338 aaPredicted RBP17.35■□□□□ 0.37
RTN4-202ENST00000337526 PHLDB1Q86UU1 1377 aa17.34■□□□□ 0.37
RTN4-202ENST00000337526 NRDCO43847 1150 aa17.34■□□□□ 0.37
RTN4-202ENST00000337526 CCDC18Q5T9S5 1454 aa17.34■□□□□ 0.37
RTN4-202ENST00000337526 PDE4AP27815 886 aa17.33■□□□□ 0.37
RTN4-202ENST00000337526 PANK3Q9H999 370 aa17.33■□□□□ 0.37
RTN4-202ENST00000337526 EIF3AQ14152 1382 aaKnown RBP17.33■□□□□ 0.36
RTN4-202ENST00000337526 GOLGA6L6A8MZA4 724 aa17.32■□□□□ 0.36
RTN4-202ENST00000337526 CHAF1AQ13111 956 aaPredicted RBP17.32■□□□□ 0.36
RTN4-202ENST00000337526 EXOC6Q8TAG9 804 aa17.32■□□□□ 0.36
RTN4-202ENST00000337526 PLIN1O60240 522 aa17.31■□□□□ 0.36
RTN4-202ENST00000337526 BICRAQ9NZM4 1560 aa17.3■□□□□ 0.36
RTN4-202ENST00000337526 PTMSP20962 102 aa17.3■□□□□ 0.36
RTN4-202ENST00000337526 KIAA1211Q6ZU35 1233 aa17.3■□□□□ 0.36
RTN4-202ENST00000337526 OSCARQ8IYS5 282 aa17.3■□□□□ 0.36
RTN4-202ENST00000337526 RRP1P56182 461 aaKnown RBP17.29■□□□□ 0.36
RTN4-202ENST00000337526 USP35Q9P2H5 1018 aa17.29■□□□□ 0.36
RTN4-202ENST00000337526 GOLGA6L3A6NEY3 463 aa17.29■□□□□ 0.36
RTN4-202ENST00000337526 TERF2IPQ9NYB0 399 aa17.28■□□□□ 0.36
RTN4-202ENST00000337526 CENPQQ7L2Z9 268 aaPredicted RBP17.28■□□□□ 0.36
RTN4-202ENST00000337526 JPH4Q96JJ6 628 aa17.27■□□□□ 0.36
RTN4-202ENST00000337526 USP47Q96K76 1375 aa17.27■□□□□ 0.36
RTN4-202ENST00000337526 FANCIQ9NVI1 1328 aa17.27■□□□□ 0.36
RTN4-202ENST00000337526 SPAG9O60271 1321 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms