RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 ADGRL1O94910 1474 aa25.67■■□□□ 1.7
PDLIM1-201ENST00000329399 GPATCH8Q9UKJ3 1502 aaKnown RBP25.66■■□□□ 1.7
PDLIM1-201ENST00000329399 RICTORQ6R327 1708 aa25.63■■□□□ 1.69
PDLIM1-201ENST00000329399 TIAM1Q13009 1591 aa25.63■■□□□ 1.69
PDLIM1-201ENST00000329399 CFAP74Q9C0B2 1584 aa25.63■■□□□ 1.69
PDLIM1-201ENST00000329399 AFAP1Q8N556 730 aa25.62■■□□□ 1.69
PDLIM1-201ENST00000329399 CDC42BPAQ5VT25 1732 aa25.62■■□□□ 1.69
PDLIM1-201ENST00000329399 ARHGEF12Q9NZN5 1544 aa25.61■■□□□ 1.69
PDLIM1-201ENST00000329399 ZNF777Q9ULD5 760 aaPredicted RBP25.6■■□□□ 1.69
PDLIM1-201ENST00000329399 PREX2Q70Z35 1606 aa25.6■■□□□ 1.69
PDLIM1-201ENST00000329399 CCNB3Q8WWL7 1395 aa25.59■■□□□ 1.69
PDLIM1-201ENST00000329399 POGZQ7Z3K3 1410 aa25.58■■□□□ 1.69
PDLIM1-201ENST00000329399 EHBP1L1Q8N3D4 1523 aa25.58■■□□□ 1.69
PDLIM1-201ENST00000329399 ZNF644Q9H582 1327 aaPredicted RBP25.57■■□□□ 1.68
PDLIM1-201ENST00000329399 YEATS2Q9ULM3 1422 aa25.57■■□□□ 1.68
PDLIM1-201ENST00000329399 LRRC9Q6ZRR7 1453 aa25.56■■□□□ 1.68
PDLIM1-201ENST00000329399 CFDP1Q9UEE9 299 aaPredicted RBP25.56■■□□□ 1.68
PDLIM1-201ENST00000329399 TRAPPC8Q9Y2L5 1435 aa25.55■■□□□ 1.68
PDLIM1-201ENST00000329399 NCOA2Q15596 1464 aa25.54■■□□□ 1.68
PDLIM1-201ENST00000329399 HNRNPMP52272 730 aaKnown RBP eCLIP25.53■■□□□ 1.681e-6■■■■□ 23
PDLIM1-201ENST00000329399 AEBP2Q6ZN18 517 aaPredicted RBP25.53■■□□□ 1.68
PDLIM1-201ENST00000329399 MAP3K1Q13233 1512 aa25.51■■□□□ 1.67
PDLIM1-201ENST00000329399 SAMD9LQ8IVG5 1584 aa25.51■■□□□ 1.67
PDLIM1-201ENST00000329399 ZMYM4Q5VZL5 1548 aa25.5■■□□□ 1.67
PDLIM1-201ENST00000329399 ABCC1P33527 1531 aa25.5■■□□□ 1.67
PDLIM1-201ENST00000329399 ZNF518AQ6AHZ1 1483 aa25.46■■□□□ 1.67
PDLIM1-201ENST00000329399 SUPT6HQ7KZ85 1726 aaKnown RBP25.45■■□□□ 1.66
PDLIM1-201ENST00000329399 ARHGEF40Q8TER5 1519 aa25.45■■□□□ 1.66
PDLIM1-201ENST00000329399 ZFYVE16Q7Z3T8 1539 aa25.44■■□□□ 1.66
PDLIM1-201ENST00000329399 SYCP2Q9BX26 1530 aa25.44■■□□□ 1.66
PDLIM1-201ENST00000329399 KDM5CP41229 1560 aa25.44■■□□□ 1.66
PDLIM1-201ENST00000329399 SIGLEC1Q9BZZ2 1709 aa25.44■■□□□ 1.66
PDLIM1-201ENST00000329399 MAGI2Q86UL8 1455 aa25.43■■□□□ 1.66
PDLIM1-201ENST00000329399 APLP2Q06481 763 aa25.43■■□□□ 1.66
PDLIM1-201ENST00000329399 ITSN2Q9NZM3 1697 aa25.42■■□□□ 1.66
PDLIM1-201ENST00000329399 ARID4BQ4LE39 1312 aaPredicted RBP25.42■■□□□ 1.66
PDLIM1-201ENST00000329399 KIAA1107Q9UPP5 1409 aa25.41■■□□□ 1.66
PDLIM1-201ENST00000329399 MYT1LQ9UL68 1186 aa25.4■■□□□ 1.66
PDLIM1-201ENST00000329399 MBD5Q9P267 1494 aa25.38■■□□□ 1.65
PDLIM1-201ENST00000329399 ATP10AO60312 1499 aa25.37■■□□□ 1.65
PDLIM1-201ENST00000329399 MLH3Q9UHC1 1453 aa25.37■■□□□ 1.65
PDLIM1-201ENST00000329399 PLEKHH2Q8IVE3 1493 aa25.34■■□□□ 1.65
PDLIM1-201ENST00000329399 SPAG9O60271 1321 aaKnown RBP25.34■■□□□ 1.65
PDLIM1-201ENST00000329399 TRIM26Q12899 539 aaPredicted RBP25.34■■□□□ 1.65
PDLIM1-201ENST00000329399 HECW2Q9P2P5 1572 aa25.33■■□□□ 1.65
PDLIM1-201ENST00000329399 MLECQ14165 292 aa25.33■■□□□ 1.65
PDLIM1-201ENST00000329399 KIDINS220Q9ULH0 1771 aa25.32■■□□□ 1.64
PDLIM1-201ENST00000329399 DIP2CQ9Y2E4 1556 aa25.32■■□□□ 1.64
PDLIM1-201ENST00000329399 CAMSAP2Q08AD1 1489 aa25.32■■□□□ 1.64
PDLIM1-201ENST00000329399 ABCA6Q8N139 1617 aa25.3■■□□□ 1.64
PDLIM1-201ENST00000329399 PPARGC1BQ86YN6 1023 aaKnown RBP25.3■■□□□ 1.64
PDLIM1-201ENST00000329399 MYOM3Q5VTT5 1437 aa25.3■■□□□ 1.64
PDLIM1-201ENST00000329399 C9orf84Q5VXU9 1444 aa25.3■■□□□ 1.64
PDLIM1-201ENST00000329399 ADAMTSL3P82987 1691 aa25.29■■□□□ 1.64
PDLIM1-201ENST00000329399 BCORL1Q5H9F3 1711 aa25.28■■□□□ 1.64
PDLIM1-201ENST00000329399 ATP7AQ04656 1500 aa25.22■■□□□ 1.63
PDLIM1-201ENST00000329399 MIA2Q96PC5 1412 aa25.22■■□□□ 1.63
PDLIM1-201ENST00000329399 MADDQ8WXG6 1647 aa25.22■■□□□ 1.63
PDLIM1-201ENST00000329399 INO80Q9ULG1 1556 aaPredicted RBP25.21■■□□□ 1.63
PDLIM1-201ENST00000329399 PTPRMP28827 1452 aa25.2■■□□□ 1.62
PDLIM1-201ENST00000329399 CCDC141Q6ZP82 1450 aa25.19■■□□□ 1.62
PDLIM1-201ENST00000329399 RSPH4AQ5TD94 716 aa25.17■■□□□ 1.62
PDLIM1-201ENST00000329399 REREQ9P2R6 1566 aa25.17■■□□□ 1.62
PDLIM1-201ENST00000329399 FGD6Q6ZV73 1430 aa25.17■■□□□ 1.62
PDLIM1-201ENST00000329399 PLPPR3Q6T4P5 718 aa25.15■■□□□ 1.62
PDLIM1-201ENST00000329399 RTEL1-TNFRSF6BF6WH68 1400 aa25.15■■□□□ 1.62
PDLIM1-201ENST00000329399 ARHGEF5Q12774 1597 aa25.15■■□□□ 1.62
PDLIM1-201ENST00000329399 A2MP01023 1474 aa25.13■■□□□ 1.61
PDLIM1-201ENST00000329399 TSPY4P0CV99 314 aa25.13■■□□□ 1.61
PDLIM1-201ENST00000329399 TSPY10P0CW01 314 aa25.13■■□□□ 1.61
PDLIM1-201ENST00000329399 AGLP35573 1532 aa25.13■■□□□ 1.61
PDLIM1-201ENST00000329399 PTPN23Q9H3S7 1636 aa25.12■■□□□ 1.61
PDLIM1-201ENST00000329399 RIMS1Q86UR5 1692 aaKnown RBP25.12■■□□□ 1.61
PDLIM1-201ENST00000329399 CEBPAP49715 358 aaPredicted RBP25.11■■□□□ 1.61
PDLIM1-201ENST00000329399 PCGF6Q9BYE7 350 aa25.11■■□□□ 1.61
PDLIM1-201ENST00000329399 ABCC5O15440 1437 aa25.1■■□□□ 1.61
PDLIM1-201ENST00000329399 TCOF1Q13428 1488 aaKnown RBP25.09■■□□□ 1.61
PDLIM1-201ENST00000329399 DHX29Q7Z478 1369 aaKnown RBP25.08■■□□□ 1.61
PDLIM1-201ENST00000329399 PLXNC1O60486 1568 aa25.08■■□□□ 1.61
PDLIM1-201ENST00000329399 FAM50AQ14320 339 aaKnown RBP25.05■■□□□ 1.6
PDLIM1-201ENST00000329399 GGT6Q6P531 493 aa25.05■■□□□ 1.6
PDLIM1-201ENST00000329399 FER1L4A9Z1Z3 1794 aa25.05■■□□□ 1.6
PDLIM1-201ENST00000329399 CHIC2Q9UKJ5 165 aa25.03■■□□□ 1.6
PDLIM1-201ENST00000329399 ADGBQ8N7X0 1667 aa25.03■■□□□ 1.6
PDLIM1-201ENST00000329399 DAPK1P53355 1430 aa25.02■■□□□ 1.6
PDLIM1-201ENST00000329399 KIF3BO15066 747 aa25.02■■□□□ 1.6
PDLIM1-201ENST00000329399 MAST1Q9Y2H9 1570 aa25■■□□□ 1.59
PDLIM1-201ENST00000329399 RRP7BPQ9NSQ0 103 aa24.99■■□□□ 1.59
PDLIM1-201ENST00000329399 DNMT1P26358 1616 aaKnown RBP24.97■■□□□ 1.59
PDLIM1-201ENST00000329399 PTPRKQ15262 1439 aa24.95■■□□□ 1.58
PDLIM1-201ENST00000329399 ESF1Q9H501 851 aaKnown RBP24.94■■□□□ 1.58
PDLIM1-201ENST00000329399 SHANK2Q9UPX8 1470 aa24.93■■□□□ 1.58
PDLIM1-201ENST00000329399 CROCC2H7BZ55 1655 aa24.92■■□□□ 1.58
PDLIM1-201ENST00000329399 ZMYM3Q14202 1370 aa24.91■■□□□ 1.58
PDLIM1-201ENST00000329399 KIF15Q9NS87 1388 aa24.91■■□□□ 1.58
PDLIM1-201ENST00000329399 NCOA1Q15788 1441 aa24.89■■□□□ 1.57
PDLIM1-201ENST00000329399 C3P01024 1663 aa24.88■■□□□ 1.57
PDLIM1-201ENST00000329399 HSPA2P54652 639 aa24.88■■□□□ 1.57
PDLIM1-201ENST00000329399 LMTK3Q96Q04 1460 aa24.87■■□□□ 1.57
PDLIM1-201ENST00000329399 CNTLNQ9NXG0 1405 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms