RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TCOF1Q13428 1488 aaKnown RBP15.03■□□□□ -0
HMGB3-201ENST00000325307 DNAJC5Q9H3Z4 198 aa15.03■□□□□ -0
HMGB3-201ENST00000325307 CAMSAP2Q08AD1 1489 aa15.02■□□□□ -0
HMGB3-201ENST00000325307 MAPKBP1O60336 1514 aa15.02□□□□□ -0.01
HMGB3-201ENST00000325307 EFCAB2Q5VUJ9 269 aa15.01□□□□□ -0.01
HMGB3-201ENST00000325307 CHIC2Q9UKJ5 165 aa15.01□□□□□ -0.01
HMGB3-201ENST00000325307 MYO5CQ9NQX4 1742 aa15□□□□□ -0.01
HMGB3-201ENST00000325307 PREX2Q70Z35 1606 aa15□□□□□ -0.01
HMGB3-201ENST00000325307 PLCH2O75038 1416 aa15□□□□□ -0.01
HMGB3-201ENST00000325307 HNRNPMP52272 730 aaKnown RBP eCLIP14.98□□□□□ -0.01
HMGB3-201ENST00000325307 CDC42BPBQ9Y5S2 1711 aa14.98□□□□□ -0.01
HMGB3-201ENST00000325307 ABCA9Q8IUA7 1624 aa14.98□□□□□ -0.01
HMGB3-201ENST00000325307 FAM69CQ0P6D2 419 aa14.98□□□□□ -0.01
HMGB3-201ENST00000325307 CD109Q6YHK3 1445 aa14.97□□□□□ -0.01
HMGB3-201ENST00000325307 PTPRKQ15262 1439 aa14.96□□□□□ -0.01
HMGB3-201ENST00000325307 DAPK1P53355 1430 aa14.96□□□□□ -0.02
HMGB3-201ENST00000325307 ABCC5O15440 1437 aa14.95□□□□□ -0.02
HMGB3-201ENST00000325307 SAMD9LQ8IVG5 1584 aa14.94□□□□□ -0.02
HMGB3-201ENST00000325307 RRP7BPQ9NSQ0 103 aa14.94□□□□□ -0.02
HMGB3-201ENST00000325307 FANCAO15360 1455 aa14.94□□□□□ -0.02
HMGB3-201ENST00000325307 TSPY4P0CV99 314 aa14.94□□□□□ -0.02
HMGB3-201ENST00000325307 TSPY10P0CW01 314 aa14.94□□□□□ -0.02
HMGB3-201ENST00000325307 DNMT1P26358 1616 aaKnown RBP14.93□□□□□ -0.02
HMGB3-201ENST00000325307 PLEKHH2Q8IVE3 1493 aa14.92□□□□□ -0.02
HMGB3-201ENST00000325307 SYCP2Q9BX26 1530 aa14.92□□□□□ -0.02
HMGB3-201ENST00000325307 ARAP3Q8WWN8 1544 aa14.91□□□□□ -0.02
HMGB3-201ENST00000325307 SETD5Q9C0A6 1442 aa14.91□□□□□ -0.02
HMGB3-201ENST00000325307 RSPH4AQ5TD94 716 aa14.9□□□□□ -0.02
HMGB3-201ENST00000325307 CCER1Q8TC90 406 aaPredicted RBP14.9□□□□□ -0.02
HMGB3-201ENST00000325307 KIAA1107Q9UPP5 1409 aa14.89□□□□□ -0.03
HMGB3-201ENST00000325307 CCDC141Q6ZP82 1450 aa14.89□□□□□ -0.03
HMGB3-201ENST00000325307 MBD5Q9P267 1494 aa14.89□□□□□ -0.03
HMGB3-201ENST00000325307 RAB3GAP2Q9H2M9 1393 aa14.89□□□□□ -0.03
HMGB3-201ENST00000325307 DIP2BQ9P265 1576 aa14.89□□□□□ -0.03
HMGB3-201ENST00000325307 ADGRL1O94910 1474 aa14.88□□□□□ -0.03
HMGB3-201ENST00000325307 AKNAQ7Z591 1439 aa14.88□□□□□ -0.03
HMGB3-201ENST00000325307 C9orf84Q5VXU9 1444 aa14.87□□□□□ -0.03
HMGB3-201ENST00000325307 MYT1LQ9UL68 1186 aa14.87□□□□□ -0.03
HMGB3-201ENST00000325307 GLI2P10070 1586 aa14.87□□□□□ -0.03
HMGB3-201ENST00000325307 HFM1A2PYH4 1435 aa14.87□□□□□ -0.03
HMGB3-201ENST00000325307 ABCC1P33527 1531 aa14.87□□□□□ -0.03
HMGB3-201ENST00000325307 SCAPERQ9BY12 1400 aa14.87□□□□□ -0.03
HMGB3-201ENST00000325307 ARHGEF5Q12774 1597 aa14.87□□□□□ -0.03
HMGB3-201ENST00000325307 ARHGEF12Q9NZN5 1544 aa14.86□□□□□ -0.03
HMGB3-201ENST00000325307 ANKRD30AQ9BXX3 1397 aa14.86□□□□□ -0.03
HMGB3-201ENST00000325307 AFAP1Q8N556 730 aa14.85□□□□□ -0.03
HMGB3-201ENST00000325307 ROCK1Q13464 1354 aa14.85□□□□□ -0.03
HMGB3-201ENST00000325307 NAIPQ13075 1403 aa14.85□□□□□ -0.03
HMGB3-201ENST00000325307 TRAPPC8Q9Y2L5 1435 aa14.85□□□□□ -0.03
HMGB3-201ENST00000325307 MAP3K4Q9Y6R4 1608 aa14.84□□□□□ -0.03
HMGB3-201ENST00000325307 TRHP20396 242 aaPredicted RBP14.84□□□□□ -0.03
HMGB3-201ENST00000325307 SHANK2Q9UPX8 1470 aa14.84□□□□□ -0.03
HMGB3-201ENST00000325307 CROCC2H7BZ55 1655 aa14.83□□□□□ -0.03
HMGB3-201ENST00000325307 SPAG9O60271 1321 aaKnown RBP14.83□□□□□ -0.04
HMGB3-201ENST00000325307 CFAP74Q9C0B2 1584 aa14.83□□□□□ -0.04
HMGB3-201ENST00000325307 NCOA1Q15788 1441 aa14.83□□□□□ -0.04
HMGB3-201ENST00000325307 TSPOAP1O95153 1857 aa14.82□□□□□ -0.04
HMGB3-201ENST00000325307 NEO1Q92859 1461 aa14.82□□□□□ -0.04
HMGB3-201ENST00000325307 ADGRL2O95490 1459 aa14.8□□□□□ -0.04
HMGB3-201ENST00000325307 KIF15Q9NS87 1388 aa14.8□□□□□ -0.04
HMGB3-201ENST00000325307 ADGBQ8N7X0 1667 aa14.8□□□□□ -0.04
HMGB3-201ENST00000325307 TRIM52Q96A61 297 aa14.8□□□□□ -0.04
HMGB3-201ENST00000325307 TEX14Q8IWB6 1497 aa14.79□□□□□ -0.04
HMGB3-201ENST00000325307 RAPGEF3O95398 923 aa14.78□□□□□ -0.04
HMGB3-201ENST00000325307 KIF13AQ9H1H9 1805 aa14.78□□□□□ -0.04
HMGB3-201ENST00000325307 GCC2Q8IWJ2 1684 aa14.78□□□□□ -0.04
HMGB3-201ENST00000325307 ZNF518AQ6AHZ1 1483 aa14.77□□□□□ -0.04
HMGB3-201ENST00000325307 DENND4BO75064 1496 aaPredicted RBP14.77□□□□□ -0.05
HMGB3-201ENST00000325307 POGZQ7Z3K3 1410 aa14.76□□□□□ -0.05
HMGB3-201ENST00000325307 ANKRD50Q9ULJ7 1429 aa14.76□□□□□ -0.05
HMGB3-201ENST00000325307 ZEB1P37275 1124 aaPredicted RBP14.76□□□□□ -0.05
HMGB3-201ENST00000325307 MAST1Q9Y2H9 1570 aa14.75□□□□□ -0.05
HMGB3-201ENST00000325307 DHX57Q6P158 1386 aaKnown RBP14.75□□□□□ -0.05
HMGB3-201ENST00000325307 KDM6BO15054 1643 aa14.74□□□□□ -0.05
HMGB3-201ENST00000325307 RTEL1-TNFRSF6BF6WH68 1400 aa14.73□□□□□ -0.05
HMGB3-201ENST00000325307 PPRC1Q5VV67 1664 aaKnown RBP14.72□□□□□ -0.05
HMGB3-201ENST00000325307 ATP7AQ04656 1500 aa14.72□□□□□ -0.05
HMGB3-201ENST00000325307 ZFYVE16Q7Z3T8 1539 aa14.72□□□□□ -0.05
HMGB3-201ENST00000325307 PLXNC1O60486 1568 aa14.71□□□□□ -0.05
HMGB3-201ENST00000325307 ACIN1Q9UKV3 1341 aaKnown RBP14.7□□□□□ -0.06
HMGB3-201ENST00000325307 DUOX2Q9NRD8 1548 aa14.69□□□□□ -0.06
HMGB3-201ENST00000325307 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.69□□□□□ -0.066e-7■■■■□ 22.5
HMGB3-201ENST00000325307 INO80Q9ULG1 1556 aaPredicted RBP14.69□□□□□ -0.06
HMGB3-201ENST00000325307 KDM5CP41229 1560 aa14.68□□□□□ -0.06
HMGB3-201ENST00000325307 SLC4A1APQ9BWU0 796 aaKnown RBP14.67□□□□□ -0.06
HMGB3-201ENST00000325307 MLH3Q9UHC1 1453 aa14.67□□□□□ -0.06
HMGB3-201ENST00000325307 HECW2Q9P2P5 1572 aa14.67□□□□□ -0.06
HMGB3-201ENST00000325307 NUP155O75694 1391 aa14.67□□□□□ -0.06
HMGB3-201ENST00000325307 MPHOSPH9Q99550 1183 aa14.66□□□□□ -0.06
HMGB3-201ENST00000325307 ERBINQ96RT1 1412 aa14.66□□□□□ -0.06
HMGB3-201ENST00000325307 KIDINS220Q9ULH0 1771 aa14.66□□□□□ -0.06
HMGB3-201ENST00000325307 RICTORQ6R327 1708 aa14.65□□□□□ -0.06
HMGB3-201ENST00000325307 KIF3BO15066 747 aa14.65□□□□□ -0.06
HMGB3-201ENST00000325307 CLSPNQ9HAW4 1339 aa14.64□□□□□ -0.07
HMGB3-201ENST00000325307 DHX29Q7Z478 1369 aaKnown RBP14.64□□□□□ -0.07
HMGB3-201ENST00000325307 PRKCSHP14314 528 aaPredicted RBP14.64□□□□□ -0.07
HMGB3-201ENST00000325307 FRMPD1Q5SYB0 1578 aa14.63□□□□□ -0.07
HMGB3-201ENST00000325307 COL17A1Q9UMD9 1497 aaPredicted RBP14.63□□□□□ -0.07
HMGB3-201ENST00000325307 A2MP01023 1474 aa14.63□□□□□ -0.07
HMGB3-201ENST00000325307 YEATS2Q9ULM3 1422 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms