RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 SCAPERQ9BY12 1400 aa19.07■□□□□ 0.64
SCFD1-201ENST00000311943 ADGRL1O94910 1474 aa19.06■□□□□ 0.64
SCFD1-201ENST00000311943 EFCAB2Q5VUJ9 269 aa19.06■□□□□ 0.64
SCFD1-201ENST00000311943 PPARGC1BQ86YN6 1023 aaKnown RBP19.06■□□□□ 0.64
SCFD1-201ENST00000311943 AFAP1Q8N556 730 aa19.06■□□□□ 0.64
SCFD1-201ENST00000311943 ARHGEF12Q9NZN5 1544 aa19.06■□□□□ 0.64
SCFD1-201ENST00000311943 PREX2Q70Z35 1606 aa19.04■□□□□ 0.64
SCFD1-201ENST00000311943 LRRC9Q6ZRR7 1453 aa19.03■□□□□ 0.64
SCFD1-201ENST00000311943 KDM4FA0A1W2PPD8 638 aa19.03■□□□□ 0.64
SCFD1-201ENST00000311943 DENND4BO75064 1496 aaPredicted RBP19.03■□□□□ 0.64
SCFD1-201ENST00000311943 RICTORQ6R327 1708 aa19.02■□□□□ 0.64
SCFD1-201ENST00000311943 EHBP1L1Q8N3D4 1523 aa19.02■□□□□ 0.64
SCFD1-201ENST00000311943 YEATS2Q9ULM3 1422 aa19.01■□□□□ 0.63
SCFD1-201ENST00000311943 NCOA2Q15596 1464 aa19.01■□□□□ 0.63
SCFD1-201ENST00000311943 CCNB3Q8WWL7 1395 aa19.01■□□□□ 0.63
SCFD1-201ENST00000311943 HNRNPMP52272 730 aaKnown RBP eCLIP19.01■□□□□ 0.632e-6■■■■□ 19.7
SCFD1-201ENST00000311943 TRAPPC8Q9Y2L5 1435 aa19■□□□□ 0.63
SCFD1-201ENST00000311943 CFDP1Q9UEE9 299 aaPredicted RBP19■□□□□ 0.63
SCFD1-201ENST00000311943 SAMD9LQ8IVG5 1584 aa18.99■□□□□ 0.63
SCFD1-201ENST00000311943 PHLDB1Q86UU1 1377 aa18.99■□□□□ 0.63
SCFD1-201ENST00000311943 POGZQ7Z3K3 1410 aa18.97■□□□□ 0.63
SCFD1-201ENST00000311943 CFAP74Q9C0B2 1584 aa18.97■□□□□ 0.63
SCFD1-201ENST00000311943 SIGLEC1Q9BZZ2 1709 aa18.96■□□□□ 0.63
SCFD1-201ENST00000311943 ABCC1P33527 1531 aa18.95■□□□□ 0.62
SCFD1-201ENST00000311943 SYCP2Q9BX26 1530 aa18.95■□□□□ 0.62
SCFD1-201ENST00000311943 SUPT6HQ7KZ85 1726 aaKnown RBP18.94■□□□□ 0.62
SCFD1-201ENST00000311943 APLP2Q06481 763 aa18.93■□□□□ 0.62
SCFD1-201ENST00000311943 MYT1LQ9UL68 1186 aa18.91■□□□□ 0.62
SCFD1-201ENST00000311943 MAP3K1Q13233 1512 aa18.91■□□□□ 0.62
SCFD1-201ENST00000311943 ITSN2Q9NZM3 1697 aa18.9■□□□□ 0.62
SCFD1-201ENST00000311943 ZMYM4Q5VZL5 1548 aa18.88■□□□□ 0.61
SCFD1-201ENST00000311943 ARID4BQ4LE39 1312 aaPredicted RBP18.87■□□□□ 0.61
SCFD1-201ENST00000311943 ZFYVE16Q7Z3T8 1539 aa18.87■□□□□ 0.61
SCFD1-201ENST00000311943 MLECQ14165 292 aa18.87■□□□□ 0.61
SCFD1-201ENST00000311943 ZNF518AQ6AHZ1 1483 aa18.87■□□□□ 0.61
SCFD1-201ENST00000311943 KDM5CP41229 1560 aa18.86■□□□□ 0.61
SCFD1-201ENST00000311943 ARHGEF40Q8TER5 1519 aa18.86■□□□□ 0.61
SCFD1-201ENST00000311943 MBD5Q9P267 1494 aa18.85■□□□□ 0.61
SCFD1-201ENST00000311943 CAMSAP2Q08AD1 1489 aa18.85■□□□□ 0.61
SCFD1-201ENST00000311943 AEBP2Q6ZN18 517 aaPredicted RBP18.84■□□□□ 0.61
SCFD1-201ENST00000311943 ABCA6Q8N139 1617 aa18.83■□□□□ 0.6
SCFD1-201ENST00000311943 KIDINS220Q9ULH0 1771 aa18.82■□□□□ 0.6
SCFD1-201ENST00000311943 MYOM3Q5VTT5 1437 aa18.82■□□□□ 0.6
SCFD1-201ENST00000311943 HECW2Q9P2P5 1572 aa18.81■□□□□ 0.6
SCFD1-201ENST00000311943 DIP2CQ9Y2E4 1556 aa18.81■□□□□ 0.6
SCFD1-201ENST00000311943 PLPPR3Q6T4P5 718 aa18.8■□□□□ 0.6
SCFD1-201ENST00000311943 SPAG9O60271 1321 aaKnown RBP18.8■□□□□ 0.6
SCFD1-201ENST00000311943 KIAA1107Q9UPP5 1409 aa18.8■□□□□ 0.6
SCFD1-201ENST00000311943 MLH3Q9UHC1 1453 aa18.79■□□□□ 0.6
SCFD1-201ENST00000311943 ATP10AO60312 1499 aa18.78■□□□□ 0.6
SCFD1-201ENST00000311943 MAGI2Q86UL8 1455 aa18.78■□□□□ 0.6
SCFD1-201ENST00000311943 BCORL1Q5H9F3 1711 aa18.75■□□□□ 0.59
SCFD1-201ENST00000311943 PLEKHH2Q8IVE3 1493 aa18.74■□□□□ 0.59
SCFD1-201ENST00000311943 ATP7AQ04656 1500 aa18.74■□□□□ 0.59
SCFD1-201ENST00000311943 C9orf84Q5VXU9 1444 aa18.74■□□□□ 0.59
SCFD1-201ENST00000311943 MADDQ8WXG6 1647 aa18.73■□□□□ 0.59
SCFD1-201ENST00000311943 FGD6Q6ZV73 1430 aa18.73■□□□□ 0.59
SCFD1-201ENST00000311943 INO80Q9ULG1 1556 aaPredicted RBP18.73■□□□□ 0.59
SCFD1-201ENST00000311943 ADAMTSL3P82987 1691 aa18.73■□□□□ 0.59
SCFD1-201ENST00000311943 PTPN23Q9H3S7 1636 aa18.72■□□□□ 0.59
SCFD1-201ENST00000311943 CCDC141Q6ZP82 1450 aa18.71■□□□□ 0.59
SCFD1-201ENST00000311943 MIA2Q96PC5 1412 aa18.71■□□□□ 0.59
SCFD1-201ENST00000311943 FAM50AQ14320 339 aaKnown RBP18.7■□□□□ 0.58
SCFD1-201ENST00000311943 CHIC2Q9UKJ5 165 aa18.7■□□□□ 0.58
SCFD1-201ENST00000311943 CEBPAP49715 358 aaPredicted RBP18.69■□□□□ 0.58
SCFD1-201ENST00000311943 ABCC5O15440 1437 aa18.68■□□□□ 0.58
SCFD1-201ENST00000311943 RIMS1Q86UR5 1692 aaKnown RBP18.67■□□□□ 0.58
SCFD1-201ENST00000311943 PTPRMP28827 1452 aa18.66■□□□□ 0.58
SCFD1-201ENST00000311943 ARHGEF5Q12774 1597 aa18.66■□□□□ 0.58
SCFD1-201ENST00000311943 A2MP01023 1474 aa18.65■□□□□ 0.58
SCFD1-201ENST00000311943 ADGBQ8N7X0 1667 aa18.64■□□□□ 0.58
SCFD1-201ENST00000311943 TSPY4P0CV99 314 aa18.64■□□□□ 0.58
SCFD1-201ENST00000311943 TSPY10P0CW01 314 aa18.64■□□□□ 0.58
SCFD1-201ENST00000311943 GGT6Q6P531 493 aa18.64■□□□□ 0.58
SCFD1-201ENST00000311943 TCOF1Q13428 1488 aaKnown RBP18.64■□□□□ 0.57
SCFD1-201ENST00000311943 ITGAEP38570 1179 aa18.64■□□□□ 0.57
SCFD1-201ENST00000311943 DAPK1P53355 1430 aa18.62■□□□□ 0.57
SCFD1-201ENST00000311943 PTPRKQ15262 1439 aa18.62■□□□□ 0.57
SCFD1-201ENST00000311943 RRP7BPQ9NSQ0 103 aa18.62■□□□□ 0.57
SCFD1-201ENST00000311943 PLXNC1O60486 1568 aa18.61■□□□□ 0.57
SCFD1-201ENST00000311943 REREQ9P2R6 1566 aa18.61■□□□□ 0.57
SCFD1-201ENST00000311943 RTEL1-TNFRSF6BF6WH68 1400 aa18.61■□□□□ 0.57
SCFD1-201ENST00000311943 FER1L4A9Z1Z3 1794 aa18.6■□□□□ 0.57
SCFD1-201ENST00000311943 KIF3BO15066 747 aa18.59■□□□□ 0.57
SCFD1-201ENST00000311943 RSPH4AQ5TD94 716 aa18.59■□□□□ 0.57
SCFD1-201ENST00000311943 AGLP35573 1532 aa18.59■□□□□ 0.57
SCFD1-201ENST00000311943 DNMT1P26358 1616 aaKnown RBP18.58■□□□□ 0.57
SCFD1-201ENST00000311943 DHX29Q7Z478 1369 aaKnown RBP18.58■□□□□ 0.57
SCFD1-201ENST00000311943 CROCC2H7BZ55 1655 aa18.57■□□□□ 0.56
SCFD1-201ENST00000311943 MAST1Q9Y2H9 1570 aa18.55■□□□□ 0.56
SCFD1-201ENST00000311943 KIF15Q9NS87 1388 aa18.53■□□□□ 0.56
SCFD1-201ENST00000311943 CLTCQ00610 1675 aaKnown RBP18.5■□□□□ 0.55
SCFD1-201ENST00000311943 HSPA2P54652 639 aa18.5■□□□□ 0.55
SCFD1-201ENST00000311943 C3P01024 1663 aa18.49■□□□□ 0.55
SCFD1-201ENST00000311943 NCOA1Q15788 1441 aa18.49■□□□□ 0.55
SCFD1-201ENST00000311943 SHANK2Q9UPX8 1470 aa18.49■□□□□ 0.55
SCFD1-201ENST00000311943 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.47■□□□□ 0.552e-7■□□□□ 10.1
SCFD1-201ENST00000311943 ESF1Q9H501 851 aaKnown RBP18.47■□□□□ 0.55
SCFD1-201ENST00000311943 ZMYM3Q14202 1370 aa18.47■□□□□ 0.55
SCFD1-201ENST00000311943 FBXO31Q5XUX0 539 aaPredicted RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms