RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 PREX2Q70Z35 1606 aa26.26■■□□□ 1.79
LSM1-201ENST00000311351 ZMYM4Q5VZL5 1548 aa26.26■■□□□ 1.79
LSM1-201ENST00000311351 POGZQ7Z3K3 1410 aa26.23■■□□□ 1.79
LSM1-201ENST00000311351 SCAPERQ9BY12 1400 aa26.23■■□□□ 1.79
LSM1-201ENST00000311351 CDC42BPAQ5VT25 1732 aa26.22■■□□□ 1.79
LSM1-201ENST00000311351 EFCAB2Q5VUJ9 269 aa26.21■■□□□ 1.79
LSM1-201ENST00000311351 ZFYVE16Q7Z3T8 1539 aa26.19■■□□□ 1.78
LSM1-201ENST00000311351 YEATS2Q9ULM3 1422 aa26.16■■□□□ 1.78
LSM1-201ENST00000311351 SIGLEC1Q9BZZ2 1709 aa26.14■■□□□ 1.78
LSM1-201ENST00000311351 ABCC1P33527 1531 aa26.14■■□□□ 1.77
LSM1-201ENST00000311351 BCORL1Q5H9F3 1711 aa26.13■■□□□ 1.77
LSM1-201ENST00000311351 ADAMTSL3P82987 1691 aa26.12■■□□□ 1.77
LSM1-201ENST00000311351 ITSN2Q9NZM3 1697 aa26.12■■□□□ 1.77
LSM1-201ENST00000311351 MTUS2Q5JR59 1369 aa26.12■■□□□ 1.77
LSM1-201ENST00000311351 EHBP1L1Q8N3D4 1523 aa26.12■■□□□ 1.77
LSM1-201ENST00000311351 MAGI2Q86UL8 1455 aa26.11■■□□□ 1.77
LSM1-201ENST00000311351 KDM5CP41229 1560 aa26.11■■□□□ 1.77
LSM1-201ENST00000311351 SENP3Q9H4L4 574 aaPredicted RBP26.1■■□□□ 1.77
LSM1-201ENST00000311351 ZNF518AQ6AHZ1 1483 aa26.1■■□□□ 1.77
LSM1-201ENST00000311351 ARHGEF12Q9NZN5 1544 aa26.09■■□□□ 1.77
LSM1-201ENST00000311351 GPATCH8Q9UKJ3 1502 aaKnown RBP26.09■■□□□ 1.77
LSM1-201ENST00000311351 SAMD9LQ8IVG5 1584 aa26.07■■□□□ 1.76
LSM1-201ENST00000311351 VPS8Q8N3P4 1428 aa26.07■■□□□ 1.76
LSM1-201ENST00000311351 ARID4BQ4LE39 1312 aaPredicted RBP26.07■■□□□ 1.76
LSM1-201ENST00000311351 MADDQ8WXG6 1647 aa26.06■■□□□ 1.76
LSM1-201ENST00000311351 HECW2Q9P2P5 1572 aa26.06■■□□□ 1.76
LSM1-201ENST00000311351 TIAM1Q13009 1591 aa26.04■■□□□ 1.76
LSM1-201ENST00000311351 TRAPPC8Q9Y2L5 1435 aa26.04■■□□□ 1.76
LSM1-201ENST00000311351 AFAP1Q8N556 730 aa26.03■■□□□ 1.76
LSM1-201ENST00000311351 SYCP2Q9BX26 1530 aa26.02■■□□□ 1.76
LSM1-201ENST00000311351 CCNB3Q8WWL7 1395 aa26.01■■□□□ 1.75
LSM1-201ENST00000311351 ABCA6Q8N139 1617 aa26■■□□□ 1.75
LSM1-201ENST00000311351 DIP2CQ9Y2E4 1556 aa26■■□□□ 1.75
LSM1-201ENST00000311351 ZNF777Q9ULD5 760 aaPredicted RBP25.99■■□□□ 1.75
LSM1-201ENST00000311351 RIMS1Q86UR5 1692 aaKnown RBP25.99■■□□□ 1.75
LSM1-201ENST00000311351 ATP10AO60312 1499 aa25.98■■□□□ 1.75
LSM1-201ENST00000311351 C9orf84Q5VXU9 1444 aa25.98■■□□□ 1.75
LSM1-201ENST00000311351 PTPRMP28827 1452 aa25.98■■□□□ 1.75
LSM1-201ENST00000311351 SUPT6HQ7KZ85 1726 aaKnown RBP25.97■■□□□ 1.75
LSM1-201ENST00000311351 MLH3Q9UHC1 1453 aa25.95■■□□□ 1.74
LSM1-201ENST00000311351 KIDINS220Q9ULH0 1771 aa25.95■■□□□ 1.74
LSM1-201ENST00000311351 CFDP1Q9UEE9 299 aaPredicted RBP25.94■■□□□ 1.74
LSM1-201ENST00000311351 NCOA2Q15596 1464 aa25.93■■□□□ 1.74
LSM1-201ENST00000311351 MYT1LQ9UL68 1186 aa25.93■■□□□ 1.74
LSM1-201ENST00000311351 FER1L4A9Z1Z3 1794 aa25.92■■□□□ 1.74
LSM1-201ENST00000311351 PLEKHH2Q8IVE3 1493 aa25.9■■□□□ 1.74
LSM1-201ENST00000311351 REREQ9P2R6 1566 aa25.9■■□□□ 1.74
LSM1-201ENST00000311351 MLECQ14165 292 aa25.89■■□□□ 1.74
LSM1-201ENST00000311351 LRRC9Q6ZRR7 1453 aa25.89■■□□□ 1.73
LSM1-201ENST00000311351 HNRNPMP52272 730 aaKnown RBP eCLIP25.88■■□□□ 1.73
LSM1-201ENST00000311351 KIAA1107Q9UPP5 1409 aa25.88■■□□□ 1.73
LSM1-201ENST00000311351 INO80Q9ULG1 1556 aaPredicted RBP25.86■■□□□ 1.73
LSM1-201ENST00000311351 ZNF644Q9H582 1327 aaPredicted RBP25.86■■□□□ 1.73
LSM1-201ENST00000311351 MAP3K1Q13233 1512 aa25.85■■□□□ 1.73
LSM1-201ENST00000311351 ATP7AQ04656 1500 aa25.84■■□□□ 1.73
LSM1-201ENST00000311351 SPAG9O60271 1321 aaKnown RBP25.81■■□□□ 1.72
LSM1-201ENST00000311351 CAMSAP2Q08AD1 1489 aa25.8■■□□□ 1.72
LSM1-201ENST00000311351 KANK4Q5T7N3 995 aaPredicted RBP25.8■■□□□ 1.72
LSM1-201ENST00000311351 MBD5Q9P267 1494 aa25.79■■□□□ 1.72
LSM1-201ENST00000311351 AGLP35573 1532 aa25.79■■□□□ 1.72
LSM1-201ENST00000311351 PLPPR3Q6T4P5 718 aa25.77■■□□□ 1.72
LSM1-201ENST00000311351 PLXNC1O60486 1568 aa25.73■■□□□ 1.71
LSM1-201ENST00000311351 CCDC141Q6ZP82 1450 aa25.72■■□□□ 1.71
LSM1-201ENST00000311351 ADGBQ8N7X0 1667 aa25.71■■□□□ 1.71
LSM1-201ENST00000311351 PHF23Q9BUL5 403 aaPredicted RBP25.7■■□□□ 1.7
LSM1-201ENST00000311351 LMTK3Q96Q04 1460 aa25.7■■□□□ 1.7
LSM1-201ENST00000311351 A2MP01023 1474 aa25.69■■□□□ 1.7
LSM1-201ENST00000311351 ARHGEF5Q12774 1597 aa25.68■■□□□ 1.7
LSM1-201ENST00000311351 MYOM3Q5VTT5 1437 aa25.67■■□□□ 1.7
LSM1-201ENST00000311351 C3P01024 1663 aa25.65■■□□□ 1.7
LSM1-201ENST00000311351 APLP2Q06481 763 aa25.65■■□□□ 1.7
LSM1-201ENST00000311351 RTEL1-TNFRSF6BF6WH68 1400 aa25.63■■□□□ 1.69
LSM1-201ENST00000311351 CEBPAP49715 358 aaPredicted RBP25.63■■□□□ 1.69
LSM1-201ENST00000311351 MIA2Q96PC5 1412 aa25.61■■□□□ 1.69
LSM1-201ENST00000311351 PREX1Q8TCU6 1659 aa25.61■■□□□ 1.69
LSM1-201ENST00000311351 MROH2AA6NES4 1674 aa25.58■■□□□ 1.68
LSM1-201ENST00000311351 CLTCQ00610 1675 aaKnown RBP25.58■■□□□ 1.68
LSM1-201ENST00000311351 ESF1Q9H501 851 aaKnown RBP25.56■■□□□ 1.68
LSM1-201ENST00000311351 MAST1Q9Y2H9 1570 aa25.56■■□□□ 1.68
LSM1-201ENST00000311351 PTPN23Q9H3S7 1636 aa25.55■■□□□ 1.68
LSM1-201ENST00000311351 CNTLNQ9NXG0 1405 aa25.55■■□□□ 1.68
LSM1-201ENST00000311351 RSPH4AQ5TD94 716 aa25.55■■□□□ 1.68
LSM1-201ENST00000311351 HSPA2P54652 639 aa25.53■■□□□ 1.68
LSM1-201ENST00000311351 DHX29Q7Z478 1369 aaKnown RBP25.53■■□□□ 1.68
LSM1-201ENST00000311351 CROCC2H7BZ55 1655 aa25.52■■□□□ 1.68
LSM1-201ENST00000311351 GGT6Q6P531 493 aa25.5■■□□□ 1.67
LSM1-201ENST00000311351 FGD6Q6ZV73 1430 aa25.5■■□□□ 1.67
LSM1-201ENST00000311351 TSPY4P0CV99 314 aa25.49■■□□□ 1.67
LSM1-201ENST00000311351 TSPY10P0CW01 314 aa25.49■■□□□ 1.67
LSM1-201ENST00000311351 SETD1BQ9UPS6 1966 aaKnown RBP25.49■■□□□ 1.67
LSM1-201ENST00000311351 TCOF1Q13428 1488 aaKnown RBP25.47■■□□□ 1.67
LSM1-201ENST00000311351 UHRF1BP1Q6BDS2 1440 aa25.46■■□□□ 1.67
LSM1-201ENST00000311351 DNMT1P26358 1616 aaKnown RBP25.45■■□□□ 1.66
LSM1-201ENST00000311351 ZMYM3Q14202 1370 aa25.44■■□□□ 1.66
LSM1-201ENST00000311351 KIF3BO15066 747 aa25.43■■□□□ 1.66
LSM1-201ENST00000311351 ABCC5O15440 1437 aa25.43■■□□□ 1.66
LSM1-201ENST00000311351 SHANK2Q9UPX8 1470 aa25.42■■□□□ 1.66
LSM1-201ENST00000311351 DAPK1P53355 1430 aa25.4■■□□□ 1.66
LSM1-201ENST00000311351 NPATQ14207 1427 aa25.4■■□□□ 1.66
LSM1-201ENST00000311351 KDM5DQ9BY66 1539 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms