RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ARXQ96QS3 562 aa6.67□□□□□ -1.34
SCN1A-201ENST00000303395 TAF3Q5VWG9 929 aa6.67□□□□□ -1.34
SCN1A-201ENST00000303395 THOC2Q8NI27 1593 aaKnown RBP6.67□□□□□ -1.34
SCN1A-201ENST00000303395 PHF14O94880 888 aa6.66□□□□□ -1.34
SCN1A-201ENST00000303395 CSPP1Q1MSJ5 1256 aa6.66□□□□□ -1.34
SCN1A-201ENST00000303395 CUX2O14529 1486 aa6.66□□□□□ -1.34
SCN1A-201ENST00000303395 UACAQ9BZF9 1416 aa6.66□□□□□ -1.34
SCN1A-201ENST00000303395 TSPY4P0CV99 314 aa6.66□□□□□ -1.34
SCN1A-201ENST00000303395 TSPY10P0CW01 314 aa6.66□□□□□ -1.34
SCN1A-201ENST00000303395 HTATSF1O43719 755 aaKnown RBP6.66□□□□□ -1.34
SCN1A-201ENST00000303395 GOLGA6L3A6NEY3 463 aa6.65□□□□□ -1.34
SCN1A-201ENST00000303395 RAPGEF2Q9Y4G8 1499 aa6.65□□□□□ -1.34
SCN1A-201ENST00000303395 FYCO1Q9BQS8 1478 aa6.65□□□□□ -1.34
SCN1A-201ENST00000303395 TPM3P06753 285 aa6.65□□□□□ -1.34
SCN1A-201ENST00000303395 GOLGA2Q08379 1002 aa6.64□□□□□ -1.35
SCN1A-201ENST00000303395 DHX29Q7Z478 1369 aaKnown RBP6.64□□□□□ -1.35
SCN1A-201ENST00000303395 CGNL1Q0VF96 1302 aa6.64□□□□□ -1.35
SCN1A-201ENST00000303395 CAVIN1Q6NZI2 390 aaKnown RBP6.64□□□□□ -1.35
SCN1A-201ENST00000303395 RBM19Q9Y4C8 960 aaKnown RBP6.64□□□□□ -1.35
SCN1A-201ENST00000303395 HMGXB3Q12766 1538 aa6.63□□□□□ -1.35
SCN1A-201ENST00000303395 KIF16BQ96L93 1317 aa6.63□□□□□ -1.35
SCN1A-201ENST00000303395 A0A0U1RQG5 324 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-201ENST00000303395 PRKCSHP14314 528 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-201ENST00000303395 PEG3Q9GZU2 1588 aa6.63□□□□□ -1.35
SCN1A-201ENST00000303395 KIF15Q9NS87 1388 aa6.63□□□□□ -1.35
SCN1A-201ENST00000303395 WWC1Q8IX03 1113 aa6.63□□□□□ -1.35
SCN1A-201ENST00000303395 NUDCQ9Y266 331 aa6.62□□□□□ -1.35
SCN1A-201ENST00000303395 ZMYM3Q14202 1370 aa6.62□□□□□ -1.35
SCN1A-201ENST00000303395 PMFBP1Q8TBY8 1022 aa6.62□□□□□ -1.35
SCN1A-201ENST00000303395 KAT6BQ8WYB5 2073 aa6.62□□□□□ -1.35
SCN1A-201ENST00000303395 DHX57Q6P158 1386 aaKnown RBP6.62□□□□□ -1.35
SCN1A-201ENST00000303395 NLRP13Q86W25 1043 aa6.62□□□□□ -1.35
SCN1A-201ENST00000303395 CCDC88BA6NC98 1476 aa6.62□□□□□ -1.35
SCN1A-201ENST00000303395 IPO8O15397 1037 aaKnown RBP6.61□□□□□ -1.35
SCN1A-201ENST00000303395 PLPPR3Q6T4P5 718 aa6.61□□□□□ -1.35
SCN1A-201ENST00000303395 ROCK1Q13464 1354 aa6.61□□□□□ -1.35
SCN1A-201ENST00000303395 TPM2P07951 284 aa6.61□□□□□ -1.35
SCN1A-201ENST00000303395 CT47B1P0C2W7 299 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-201ENST00000303395 ANO8Q9HCE9 1232 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-201ENST00000303395 MSNP26038 577 aaKnown RBP6.61□□□□□ -1.35
SCN1A-201ENST00000303395 CENPQQ7L2Z9 268 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-201ENST00000303395 CCDC34Q96HJ3 373 aa6.61□□□□□ -1.35
SCN1A-201ENST00000303395 DDX10Q13206 875 aaKnown RBP6.6□□□□□ -1.35
SCN1A-201ENST00000303395 ERCC6Q03468 1493 aa6.6□□□□□ -1.35
SCN1A-201ENST00000303395 MROH2BQ7Z745 1585 aa6.6□□□□□ -1.35
SCN1A-201ENST00000303395 PPP1R15AO75807 674 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-201ENST00000303395 TSPYL1Q9H0U9 437 aa6.6□□□□□ -1.35
SCN1A-201ENST00000303395 ZMYM4Q5VZL5 1548 aa6.6□□□□□ -1.35
SCN1A-201ENST00000303395 MCCP23508 829 aa6.6□□□□□ -1.35
SCN1A-201ENST00000303395 HSCBQ8IWL3 235 aa6.6□□□□□ -1.35
SCN1A-201ENST00000303395 HMGN5P82970 282 aaKnown RBP6.6□□□□□ -1.35
SCN1A-201ENST00000303395 CARMIL2Q6F5E8 1435 aa6.6□□□□□ -1.35
SCN1A-201ENST00000303395 CARMIL1Q5VZK9 1371 aa6.6□□□□□ -1.35
SCN1A-201ENST00000303395 ATP6V1DQ9Y5K8 247 aa6.6□□□□□ -1.35
SCN1A-201ENST00000303395 BRD4O60885 1362 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-201ENST00000303395 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-201ENST00000303395 BCL11BQ9C0K0 894 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-201ENST00000303395 KNSTRNQ9Y448 316 aa6.59□□□□□ -1.36
SCN1A-201ENST00000303395 DEKP35659 375 aaKnown RBP6.59□□□□□ -1.36
SCN1A-201ENST00000303395 CASKIN1Q8WXD9 1431 aa6.58□□□□□ -1.36
SCN1A-201ENST00000303395 RWDD1Q9H446 243 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-201ENST00000303395 EHBP1L1Q8N3D4 1523 aa6.58□□□□□ -1.36
SCN1A-201ENST00000303395 TSHZ2Q9NRE2 1034 aa6.58□□□□□ -1.36
SCN1A-201ENST00000303395 KANK1Q14678 1352 aa6.58□□□□□ -1.36
SCN1A-201ENST00000303395 ATAD2Q6PL18 1390 aa6.58□□□□□ -1.36
SCN1A-201ENST00000303395 CCDC7Q96M83 1385 aa6.58□□□□□ -1.36
SCN1A-201ENST00000303395 RAB3GAP2Q9H2M9 1393 aa6.57□□□□□ -1.36
SCN1A-201ENST00000303395 CIZ1Q9ULV3 898 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-201ENST00000303395 TOP2BQ02880 1626 aa6.57□□□□□ -1.36
SCN1A-201ENST00000303395 FAM43AQ8N2R8 423 aa6.57□□□□□ -1.36
SCN1A-201ENST00000303395 GOLGA6L1Q8N7Z2 621 aa6.57□□□□□ -1.36
SCN1A-201ENST00000303395 KIF3AQ9Y496 699 aa6.57□□□□□ -1.36
SCN1A-201ENST00000303395 HFM1A2PYH4 1435 aa6.57□□□□□ -1.36
SCN1A-201ENST00000303395 MYOM3Q5VTT5 1437 aa6.57□□□□□ -1.36
SCN1A-201ENST00000303395 PDCL2Q8N4E4 241 aa6.57□□□□□ -1.36
SCN1A-201ENST00000303395 PDS5BQ9NTI5 1447 aa6.57□□□□□ -1.36
SCN1A-201ENST00000303395 RRP9O43818 475 aaKnown RBP6.56□□□□□ -1.36
SCN1A-201ENST00000303395 TNNT3P45378 269 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-201ENST00000303395 TMF1P82094 1093 aa6.56□□□□□ -1.36
SCN1A-201ENST00000303395 ZNF428Q96B54 188 aa6.56□□□□□ -1.36
SCN1A-201ENST00000303395 FGD1P98174 961 aa6.56□□□□□ -1.36
SCN1A-201ENST00000303395 SETQ01105 290 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-201ENST00000303395 MYBBP1AQ9BQG0 1328 aaKnown RBP6.56□□□□□ -1.36
SCN1A-201ENST00000303395 CREBRFQ8IUR6 639 aa6.56□□□□□ -1.36
SCN1A-201ENST00000303395 GOLGA6L4A6NEF3 574 aa6.56□□□□□ -1.36
SCN1A-201ENST00000303395 GSE1Q14687 1217 aa6.56□□□□□ -1.36
SCN1A-201ENST00000303395 CEP89Q96ST8 783 aa6.55□□□□□ -1.36
SCN1A-201ENST00000303395 MCM5P33992 734 aa6.55□□□□□ -1.36
SCN1A-201ENST00000303395 AMER1Q5JTC6 1135 aaPredicted RBP6.55□□□□□ -1.36
SCN1A-201ENST00000303395 CNKSR2Q8WXI2 1034 aa6.55□□□□□ -1.36
SCN1A-201ENST00000303395 C14orf37Q86TY3 774 aa6.55□□□□□ -1.36
SCN1A-201ENST00000303395 SMG6Q86US8 1419 aaKnown RBP6.54□□□□□ -1.36
SCN1A-201ENST00000303395 PRXQ9BXM0 1461 aa6.54□□□□□ -1.36
SCN1A-201ENST00000303395 CUL7Q14999 1698 aa6.54□□□□□ -1.36
SCN1A-201ENST00000303395 DAPK1P53355 1430 aa6.54□□□□□ -1.36
SCN1A-201ENST00000303395 NCAPD3P42695 1498 aa6.54□□□□□ -1.36
SCN1A-201ENST00000303395 LMOD3Q0VAK6 560 aa6.54□□□□□ -1.36
SCN1A-201ENST00000303395 TMX4Q9H1E5 349 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-201ENST00000303395 FAM193AP78312 1265 aa6.54□□□□□ -1.36
SCN1A-201ENST00000303395 FAM161AQ3B820 660 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms