RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 FGD6Q6ZV73 1430 aa14.66□□□□□ -0.06
RFX3-201ENST00000302303 MIA2Q96PC5 1412 aa14.66□□□□□ -0.06
RFX3-201ENST00000302303 MYO5CQ9NQX4 1742 aa14.66□□□□□ -0.06
RFX3-201ENST00000302303 TRHP20396 242 aaPredicted RBP14.65□□□□□ -0.06
RFX3-201ENST00000302303 CFDP1Q9UEE9 299 aaPredicted RBP14.65□□□□□ -0.06
RFX3-201ENST00000302303 RRBP1Q9P2E9 1410 aaKnown RBP14.65□□□□□ -0.06
RFX3-201ENST00000302303 FANCAO15360 1455 aa14.63□□□□□ -0.07
RFX3-201ENST00000302303 TCOF1Q13428 1488 aaKnown RBP14.63□□□□□ -0.07
RFX3-201ENST00000302303 SAMD9LQ8IVG5 1584 aa14.63□□□□□ -0.07
RFX3-201ENST00000302303 ARHGAP5Q13017 1502 aa14.62□□□□□ -0.07
RFX3-201ENST00000302303 ARHGEF12Q9NZN5 1544 aa14.62□□□□□ -0.07
RFX3-201ENST00000302303 EFCAB2Q5VUJ9 269 aa14.62□□□□□ -0.07
RFX3-201ENST00000302303 ITSN2Q9NZM3 1697 aa14.62□□□□□ -0.07
RFX3-201ENST00000302303 TSPOAP1O95153 1857 aa14.61□□□□□ -0.07
RFX3-201ENST00000302303 AKNAQ7Z591 1439 aa14.6□□□□□ -0.07
RFX3-201ENST00000302303 MBD5Q9P267 1494 aa14.6□□□□□ -0.07
RFX3-201ENST00000302303 PTPN23Q9H3S7 1636 aa14.6□□□□□ -0.07
RFX3-201ENST00000302303 CAMSAP2Q08AD1 1489 aa14.59□□□□□ -0.07
RFX3-201ENST00000302303 NEO1Q92859 1461 aa14.59□□□□□ -0.07
RFX3-201ENST00000302303 COL17A1Q9UMD9 1497 aaPredicted RBP14.59□□□□□ -0.07
RFX3-201ENST00000302303 ZNF777Q9ULD5 760 aaPredicted RBP14.59□□□□□ -0.07
RFX3-201ENST00000302303 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.58□□□□□ -0.07
RFX3-201ENST00000302303 KIAA1107Q9UPP5 1409 aa14.58□□□□□ -0.08
RFX3-201ENST00000302303 ABCC1P33527 1531 aa14.57□□□□□ -0.08
RFX3-201ENST00000302303 HNRNPMP52272 730 aaKnown RBP eCLIP14.57□□□□□ -0.08
RFX3-201ENST00000302303 TRAPPC8Q9Y2L5 1435 aa14.56□□□□□ -0.08
RFX3-201ENST00000302303 TEX14Q8IWB6 1497 aa14.56□□□□□ -0.08
RFX3-201ENST00000302303 PTPRKQ15262 1439 aa14.55□□□□□ -0.08
RFX3-201ENST00000302303 SCAPERQ9BY12 1400 aa14.55□□□□□ -0.08
RFX3-201ENST00000302303 SYCP2Q9BX26 1530 aa14.55□□□□□ -0.08
RFX3-201ENST00000302303 ABCC5O15440 1437 aa14.54□□□□□ -0.08
RFX3-201ENST00000302303 ADGRL1O94910 1474 aa14.54□□□□□ -0.08
RFX3-201ENST00000302303 FAM50AQ14320 339 aaKnown RBP14.54□□□□□ -0.08
RFX3-201ENST00000302303 CFAP74Q9C0B2 1584 aa14.53□□□□□ -0.08
RFX3-201ENST00000302303 AFAP1Q8N556 730 aa14.53□□□□□ -0.08
RFX3-201ENST00000302303 PLEKHH2Q8IVE3 1493 aa14.53□□□□□ -0.08
RFX3-201ENST00000302303 ARHGEF5Q12774 1597 aa14.52□□□□□ -0.09
RFX3-201ENST00000302303 RAPGEF3O95398 923 aa14.51□□□□□ -0.09
RFX3-201ENST00000302303 FRMPD1Q5SYB0 1578 aa14.5□□□□□ -0.09
RFX3-201ENST00000302303 DNMT1P26358 1616 aaKnown RBP14.5□□□□□ -0.09
RFX3-201ENST00000302303 DAPK1P53355 1430 aa14.5□□□□□ -0.09
RFX3-201ENST00000302303 POGZQ7Z3K3 1410 aa14.5□□□□□ -0.09
RFX3-201ENST00000302303 DENND4BO75064 1496 aaPredicted RBP14.49□□□□□ -0.09
RFX3-201ENST00000302303 TRIM26Q12899 539 aaPredicted RBP14.49□□□□□ -0.09
RFX3-201ENST00000302303 RICTORQ6R327 1708 aa14.49□□□□□ -0.09
RFX3-201ENST00000302303 RSPH4AQ5TD94 716 aa14.48□□□□□ -0.09
RFX3-201ENST00000302303 KDM5CP41229 1560 aa14.48□□□□□ -0.09
RFX3-201ENST00000302303 CCDC141Q6ZP82 1450 aa14.48□□□□□ -0.09
RFX3-201ENST00000302303 SENP3Q9H4L4 574 aaPredicted RBP14.46□□□□□ -0.09
RFX3-201ENST00000302303 ZNF518AQ6AHZ1 1483 aa14.46□□□□□ -0.09
RFX3-201ENST00000302303 ITGAEP38570 1179 aa14.45□□□□□ -0.1
RFX3-201ENST00000302303 CROCC2H7BZ55 1655 aa14.44□□□□□ -0.1
RFX3-201ENST00000302303 MAST1Q9Y2H9 1570 aa14.44□□□□□ -0.1
RFX3-201ENST00000302303 MLH3Q9UHC1 1453 aa14.43□□□□□ -0.1
RFX3-201ENST00000302303 SHANK2Q9UPX8 1470 aa14.43□□□□□ -0.1
RFX3-201ENST00000302303 CHIC2Q9UKJ5 165 aa14.43□□□□□ -0.1
RFX3-201ENST00000302303 ZMYM4Q5VZL5 1548 aa14.43□□□□□ -0.1
RFX3-201ENST00000302303 RTEL1-TNFRSF6BF6WH68 1400 aa14.42□□□□□ -0.1
RFX3-201ENST00000302303 NCOA1Q15788 1441 aa14.42□□□□□ -0.1
RFX3-201ENST00000302303 C9orf84Q5VXU9 1444 aa14.42□□□□□ -0.1
RFX3-201ENST00000302303 KIDINS220Q9ULH0 1771 aa14.42□□□□□ -0.1
RFX3-201ENST00000302303 ADGRL2O95490 1459 aa14.42□□□□□ -0.1
RFX3-201ENST00000302303 SPAG9O60271 1321 aaKnown RBP14.42□□□□□ -0.1
RFX3-201ENST00000302303 INO80Q9ULG1 1556 aaPredicted RBP14.42□□□□□ -0.1
RFX3-201ENST00000302303 TSPY4P0CV99 314 aa14.41□□□□□ -0.1
RFX3-201ENST00000302303 TSPY10P0CW01 314 aa14.41□□□□□ -0.1
RFX3-201ENST00000302303 ZFYVE16Q7Z3T8 1539 aa14.41□□□□□ -0.1
RFX3-201ENST00000302303 KDM6BO15054 1643 aa14.41□□□□□ -0.1
RFX3-201ENST00000302303 YEATS2Q9ULM3 1422 aa14.41□□□□□ -0.1
RFX3-201ENST00000302303 ROCK1Q13464 1354 aa14.4□□□□□ -0.1
RFX3-201ENST00000302303 ATP7AQ04656 1500 aa14.39□□□□□ -0.11
RFX3-201ENST00000302303 HECW2Q9P2P5 1572 aa14.38□□□□□ -0.11
RFX3-201ENST00000302303 MAGI2Q86UL8 1455 aa14.37□□□□□ -0.11
RFX3-201ENST00000302303 RRP7BPQ9NSQ0 103 aa14.37□□□□□ -0.11
RFX3-201ENST00000302303 PCGF6Q9BYE7 350 aa14.36□□□□□ -0.11
RFX3-201ENST00000302303 NAIPQ13075 1403 aa14.36□□□□□ -0.11
RFX3-201ENST00000302303 PLXNC1O60486 1568 aa14.36□□□□□ -0.11
RFX3-201ENST00000302303 ABCA6Q8N139 1617 aa14.36□□□□□ -0.11
RFX3-201ENST00000302303 DIP2CQ9Y2E4 1556 aa14.36□□□□□ -0.11
RFX3-201ENST00000302303 ANKRD30AQ9BXX3 1397 aa14.35□□□□□ -0.11
RFX3-201ENST00000302303 HFM1A2PYH4 1435 aa14.35□□□□□ -0.11
RFX3-201ENST00000302303 ADGBQ8N7X0 1667 aa14.34□□□□□ -0.11
RFX3-201ENST00000302303 KIF15Q9NS87 1388 aa14.33□□□□□ -0.11
RFX3-201ENST00000302303 SIGLEC1Q9BZZ2 1709 aa14.32□□□□□ -0.12
RFX3-201ENST00000302303 DHX29Q7Z478 1369 aaKnown RBP14.32□□□□□ -0.12
RFX3-201ENST00000302303 ATP10AO60312 1499 aa14.32□□□□□ -0.12
RFX3-201ENST00000302303 ARHGEF40Q8TER5 1519 aa14.31□□□□□ -0.12
RFX3-201ENST00000302303 A2MP01023 1474 aa14.3□□□□□ -0.12
RFX3-201ENST00000302303 DUOX2Q9NRD8 1548 aa14.3□□□□□ -0.12
RFX3-201ENST00000302303 MYT1LQ9UL68 1186 aa14.29□□□□□ -0.12
RFX3-201ENST00000302303 SETD5Q9C0A6 1442 aa14.29□□□□□ -0.12
RFX3-201ENST00000302303 ANKRD50Q9ULJ7 1429 aa14.29□□□□□ -0.12
RFX3-201ENST00000302303 REREQ9P2R6 1566 aa14.29□□□□□ -0.12
RFX3-201ENST00000302303 GCC2Q8IWJ2 1684 aa14.28□□□□□ -0.12
RFX3-201ENST00000302303 ERBINQ96RT1 1412 aa14.27□□□□□ -0.13
RFX3-201ENST00000302303 RAB3GAP2Q9H2M9 1393 aa14.26□□□□□ -0.13
RFX3-201ENST00000302303 AGLP35573 1532 aa14.25□□□□□ -0.13
RFX3-201ENST00000302303 HRCP23327 699 aa14.25□□□□□ -0.13
RFX3-201ENST00000302303 PLPPR3Q6T4P5 718 aa14.24□□□□□ -0.13
RFX3-201ENST00000302303 BCORL1Q5H9F3 1711 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms