RNA–Protein interactions for RNA: ENST00000302206.9

TPM3-202, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 741 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-202ENST00000302206 GLI2P10070 1586 aa17.85■□□□□ 0.45
TPM3-202ENST00000302206 DHX57Q6P158 1386 aaKnown RBP17.83■□□□□ 0.45
TPM3-202ENST00000302206 ITGAEP38570 1179 aa17.83■□□□□ 0.44
TPM3-202ENST00000302206 ABCC2Q92887 1545 aa17.82■□□□□ 0.44
TPM3-202ENST00000302206 ARID3CA6NKF2 412 aa17.82■□□□□ 0.44
TPM3-202ENST00000302206 ITSN2Q9NZM3 1697 aa17.82■□□□□ 0.44
TPM3-202ENST00000302206 ASXL2Q76L83 1435 aa17.81■□□□□ 0.44
TPM3-202ENST00000302206 RAB3GAP2Q9H2M9 1393 aa17.81■□□□□ 0.44
TPM3-202ENST00000302206 UHRF1BP1LA0JNW5 1464 aa17.81■□□□□ 0.44
TPM3-202ENST00000302206 PLEKHD1A6NEE1 506 aa17.8■□□□□ 0.44
TPM3-202ENST00000302206 KIF14Q15058 1648 aa17.8■□□□□ 0.44
TPM3-202ENST00000302206 AKNAQ7Z591 1439 aa17.79■□□□□ 0.44
TPM3-202ENST00000302206 HFM1A2PYH4 1435 aa17.78■□□□□ 0.44
TPM3-202ENST00000302206 PTPRKQ15262 1439 aa17.77■□□□□ 0.44
TPM3-202ENST00000302206 GPATCH8Q9UKJ3 1502 aaKnown RBP17.76■□□□□ 0.43
TPM3-202ENST00000302206 TEX14Q8IWB6 1497 aa17.75■□□□□ 0.43
TPM3-202ENST00000302206 MAP3K4Q9Y6R4 1608 aa17.74■□□□□ 0.43
TPM3-202ENST00000302206 COL17A1Q9UMD9 1497 aaPredicted RBP17.74■□□□□ 0.43
TPM3-202ENST00000302206 DNMT1P26358 1616 aaKnown RBP17.72■□□□□ 0.43
TPM3-202ENST00000302206 KDM5BQ9UGL1 1544 aa17.71■□□□□ 0.43
TPM3-202ENST00000302206 NAIPQ13075 1403 aa17.71■□□□□ 0.43
TPM3-202ENST00000302206 GCC2Q8IWJ2 1684 aa17.71■□□□□ 0.42
TPM3-202ENST00000302206 ROCK1Q13464 1354 aa17.7■□□□□ 0.42
TPM3-202ENST00000302206 ACIN1Q9UKV3 1341 aaKnown RBP17.7■□□□□ 0.42
TPM3-202ENST00000302206 CDC42BPAQ5VT25 1732 aa17.69■□□□□ 0.42
TPM3-202ENST00000302206 FBXO41Q8TF61 875 aa17.69■□□□□ 0.42
TPM3-202ENST00000302206 DAPK1P53355 1430 aa17.69■□□□□ 0.42
TPM3-202ENST00000302206 CAMSAP2Q08AD1 1489 aa17.69■□□□□ 0.42
TPM3-202ENST00000302206 CFDP1Q9UEE9 299 aaPredicted RBP17.68■□□□□ 0.42
TPM3-202ENST00000302206 ABCC5O15440 1437 aa17.66■□□□□ 0.42
TPM3-202ENST00000302206 ZCCHC11Q5TAX3 1644 aaKnown RBP17.66■□□□□ 0.42
TPM3-202ENST00000302206 PREX2Q70Z35 1606 aa17.64■□□□□ 0.41
TPM3-202ENST00000302206 CROCC2H7BZ55 1655 aa17.62■□□□□ 0.41
TPM3-202ENST00000302206 ZNF644Q9H582 1327 aaPredicted RBP17.61■□□□□ 0.41
TPM3-202ENST00000302206 ADGRL2O95490 1459 aa17.61■□□□□ 0.41
TPM3-202ENST00000302206 SHANK2Q9UPX8 1470 aa17.61■□□□□ 0.41
TPM3-202ENST00000302206 ADGBQ8N7X0 1667 aa17.61■□□□□ 0.41
TPM3-202ENST00000302206 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.6■□□□□ 0.413e-7■□□□□ 8.5
TPM3-202ENST00000302206 ARHGEF5Q12774 1597 aa17.6■□□□□ 0.41
TPM3-202ENST00000302206 CDC42BPBQ9Y5S2 1711 aa17.58■□□□□ 0.4
TPM3-202ENST00000302206 TTC37Q6PGP7 1564 aa17.57■□□□□ 0.4
TPM3-202ENST00000302206 MYO5CQ9NQX4 1742 aa17.56■□□□□ 0.4
TPM3-202ENST00000302206 WDR7Q9Y4E6 1490 aa17.56■□□□□ 0.4
TPM3-202ENST00000302206 RRP7BPQ9NSQ0 103 aa17.55■□□□□ 0.4
TPM3-202ENST00000302206 CHIC2Q9UKJ5 165 aa17.55■□□□□ 0.4
TPM3-202ENST00000302206 RSPH4AQ5TD94 716 aa17.54■□□□□ 0.4
TPM3-202ENST00000302206 PLEKHH2Q8IVE3 1493 aa17.54■□□□□ 0.4
TPM3-202ENST00000302206 NCOA1Q15788 1441 aa17.54■□□□□ 0.4
TPM3-202ENST00000302206 SAMD9LQ8IVG5 1584 aa17.53■□□□□ 0.4
TPM3-202ENST00000302206 ARAP3Q8WWN8 1544 aa17.53■□□□□ 0.4
TPM3-202ENST00000302206 TIMELESSQ9UNS1 1208 aa17.53■□□□□ 0.4
TPM3-202ENST00000302206 MBD5Q9P267 1494 aa17.52■□□□□ 0.4
TPM3-202ENST00000302206 KCNH8Q96L42 1107 aa17.52■□□□□ 0.4
TPM3-202ENST00000302206 ZNF777Q9ULD5 760 aaPredicted RBP17.52■□□□□ 0.4
TPM3-202ENST00000302206 CD109Q6YHK3 1445 aa17.52■□□□□ 0.4
TPM3-202ENST00000302206 ANKRD30AQ9BXX3 1397 aa17.52■□□□□ 0.39
TPM3-202ENST00000302206 PLCH2O75038 1416 aa17.51■□□□□ 0.39
TPM3-202ENST00000302206 KIAA1107Q9UPP5 1409 aa17.51■□□□□ 0.39
TPM3-202ENST00000302206 ARHGAP5Q13017 1502 aa17.51■□□□□ 0.39
TPM3-202ENST00000302206 CCDC141Q6ZP82 1450 aa17.5■□□□□ 0.39
TPM3-202ENST00000302206 MAST1Q9Y2H9 1570 aa17.49■□□□□ 0.39
TPM3-202ENST00000302206 C9orf84Q5VXU9 1444 aa17.48■□□□□ 0.39
TPM3-202ENST00000302206 TSPY4P0CV99 314 aa17.45■□□□□ 0.38
TPM3-202ENST00000302206 TSPY10P0CW01 314 aa17.45■□□□□ 0.38
TPM3-202ENST00000302206 ABCA9Q8IUA7 1624 aa17.45■□□□□ 0.38
TPM3-202ENST00000302206 EFCAB2Q5VUJ9 269 aa17.44■□□□□ 0.38
TPM3-202ENST00000302206 PTPRMP28827 1452 aa17.44■□□□□ 0.38
TPM3-202ENST00000302206 SYCP2Q9BX26 1530 aa17.43■□□□□ 0.38
TPM3-202ENST00000302206 ZNF316A6NFI3 1004 aaPredicted RBP17.43■□□□□ 0.38
TPM3-202ENST00000302206 HNRNPMP52272 730 aaKnown RBP eCLIP17.42■□□□□ 0.388e-7■■■□□ 16.5
TPM3-202ENST00000302206 DENND4BO75064 1496 aaPredicted RBP17.42■□□□□ 0.38
TPM3-202ENST00000302206 ADAMTSL3P82987 1691 aa17.42■□□□□ 0.38
TPM3-202ENST00000302206 TRIM52Q96A61 297 aa17.41■□□□□ 0.38
TPM3-202ENST00000302206 ABCC1P33527 1531 aa17.41■□□□□ 0.38
TPM3-202ENST00000302206 ANKRD50Q9ULJ7 1429 aa17.4■□□□□ 0.38
TPM3-202ENST00000302206 LMTK3Q96Q04 1460 aa17.4■□□□□ 0.38
TPM3-202ENST00000302206 MPHOSPH9Q99550 1183 aa17.4■□□□□ 0.38
TPM3-202ENST00000302206 PLXNC1O60486 1568 aa17.4■□□□□ 0.38
TPM3-202ENST00000302206 SIN3AQ96ST3 1273 aa17.38■□□□□ 0.37
TPM3-202ENST00000302206 KDM5DQ9BY66 1539 aa17.37■□□□□ 0.37
TPM3-202ENST00000302206 KIF15Q9NS87 1388 aa17.37■□□□□ 0.37
TPM3-202ENST00000302206 ARHGEF12Q9NZN5 1544 aa17.37■□□□□ 0.37
TPM3-202ENST00000302206 PZPP20742 1482 aa17.36■□□□□ 0.37
TPM3-202ENST00000302206 BCORL1Q5H9F3 1711 aa17.34■□□□□ 0.37
TPM3-202ENST00000302206 NEUROD1Q13562 356 aa17.33■□□□□ 0.36
TPM3-202ENST00000302206 MADDQ8WXG6 1647 aa17.32■□□□□ 0.36
TPM3-202ENST00000302206 RTEL1-TNFRSF6BF6WH68 1400 aa17.32■□□□□ 0.36
TPM3-202ENST00000302206 TONSLQ96HA7 1378 aa17.32■□□□□ 0.36
TPM3-202ENST00000302206 FANCAO15360 1455 aa17.31■□□□□ 0.36
TPM3-202ENST00000302206 ANKRD30BQ9BXX2 1392 aa17.31■□□□□ 0.36
TPM3-202ENST00000302206 DUOX2Q9NRD8 1548 aa17.31■□□□□ 0.36
TPM3-202ENST00000302206 PPP1R15AO75807 674 aaPredicted RBP17.3■□□□□ 0.36
TPM3-202ENST00000302206 RAPGEF3O95398 923 aa17.3■□□□□ 0.36
TPM3-202ENST00000302206 SLC4A1APQ9BWU0 796 aaKnown RBP17.3■□□□□ 0.36
TPM3-202ENST00000302206 CFAP74Q9C0B2 1584 aa17.3■□□□□ 0.36
TPM3-202ENST00000302206 ARID4BQ4LE39 1312 aaPredicted RBP17.29■□□□□ 0.36
TPM3-202ENST00000302206 UNC13BO14795 1591 aa17.28■□□□□ 0.36
TPM3-202ENST00000302206 ERBINQ96RT1 1412 aa17.28■□□□□ 0.36
TPM3-202ENST00000302206 TRAPPC8Q9Y2L5 1435 aa17.28■□□□□ 0.36
TPM3-202ENST00000302206 RIMS1Q86UR5 1692 aaKnown RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms