RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 PPP4R2Q9NY27 417 aa22.19■■□□□ 1.14
SHANK1-201ENST00000293441 CSB-PGBD3P0DP91 1061 aa22.17■■□□□ 1.14
SHANK1-201ENST00000293441 PLCB2Q00722 1185 aa22.17■■□□□ 1.14
SHANK1-201ENST00000293441 SETD5Q9C0A6 1442 aa22.16■■□□□ 1.14
SHANK1-201ENST00000293441 TDRD9Q8NDG6 1382 aaKnown RBP22.16■■□□□ 1.14
SHANK1-201ENST00000293441 HSPA5P11021 654 aaKnown RBP22.15■■□□□ 1.14
SHANK1-201ENST00000293441 DNTTIP2Q5QJE6 756 aaKnown RBP22.15■■□□□ 1.14
SHANK1-201ENST00000293441 CCDC88BA6NC98 1476 aa22.15■■□□□ 1.14
SHANK1-201ENST00000293441 ZNF330Q9Y3S2 320 aaPredicted RBP22.13■■□□□ 1.13
SHANK1-201ENST00000293441 B4GALNT3Q6L9W6 998 aa22.12■■□□□ 1.13
SHANK1-201ENST00000293441 ROCK2O75116 1388 aaKnown RBP22.12■■□□□ 1.13
SHANK1-201ENST00000293441 EFCAB2Q5VUJ9 269 aa22.12■■□□□ 1.13
SHANK1-201ENST00000293441 ISY1Q9ULR0 285 aaKnown RBP22.12■■□□□ 1.13
SHANK1-201ENST00000293441 SMARCA2P51531 1590 aa22.11■■□□□ 1.13
SHANK1-201ENST00000293441 KANK4Q5T7N3 995 aaPredicted RBP22.09■■□□□ 1.13
SHANK1-201ENST00000293441 APBB1O00213 710 aa22.09■■□□□ 1.13
SHANK1-201ENST00000293441 NUP155O75694 1391 aa22.09■■□□□ 1.13
SHANK1-201ENST00000293441 KTN1Q86UP2 1357 aaKnown RBP22.08■■□□□ 1.13
SHANK1-201ENST00000293441 CCDC9Q9Y3X0 531 aaKnown RBP22.08■■□□□ 1.13
SHANK1-201ENST00000293441 NUTM2DQ5VT03 806 aaPredicted RBP22.07■■□□□ 1.12
SHANK1-201ENST00000293441 MROH2BQ7Z745 1585 aa22.07■■□□□ 1.12
SHANK1-201ENST00000293441 KIF3BO15066 747 aa22.07■■□□□ 1.12
SHANK1-201ENST00000293441 HNRNPMP52272 730 aaKnown RBP eCLIP22.05■■□□□ 1.12
SHANK1-201ENST00000293441 U2AF1L5P0DN76 240 aaPredicted RBP22.05■■□□□ 1.12
SHANK1-201ENST00000293441 U2AF1Q01081 240 aaKnown RBP eCLIP22.05■■□□□ 1.12
SHANK1-201ENST00000293441 MPHOSPH9Q99550 1183 aa22.04■■□□□ 1.12
SHANK1-201ENST00000293441 MCCP23508 829 aa22.03■■□□□ 1.12
SHANK1-201ENST00000293441 VPS8Q8N3P4 1428 aa22.03■■□□□ 1.12
SHANK1-201ENST00000293441 ANKRD30AQ9BXX3 1397 aa22.03■■□□□ 1.12
SHANK1-201ENST00000293441 HSCBQ8IWL3 235 aa22.02■■□□□ 1.12
SHANK1-201ENST00000293441 GOLGA6L4A6NEF3 574 aa22.02■■□□□ 1.12
SHANK1-201ENST00000293441 FMN1Q68DA7 1419 aa22.02■■□□□ 1.11
SHANK1-201ENST00000293441 CLSTN1O94985 981 aa22.01■■□□□ 1.11
SHANK1-201ENST00000293441 SPRYD3Q8NCJ5 442 aa22.01■■□□□ 1.11
SHANK1-201ENST00000293441 GOLGA6L6A8MZA4 724 aa22■■□□□ 1.11
SHANK1-201ENST00000293441 EID1Q9Y6B2 187 aa22■■□□□ 1.11
SHANK1-201ENST00000293441 TIMELESSQ9UNS1 1208 aa21.99■■□□□ 1.11
SHANK1-201ENST00000293441 IPO8O15397 1037 aaKnown RBP21.97■■□□□ 1.11
SHANK1-201ENST00000293441 WASHC2CQ9Y4E1 1318 aa21.97■■□□□ 1.11
SHANK1-201ENST00000293441 CALD1Q05682 793 aaKnown RBP21.96■■□□□ 1.11
SHANK1-201ENST00000293441 EIF3AQ14152 1382 aaKnown RBP21.95■■□□□ 1.1
SHANK1-201ENST00000293441 ITPRIPQ8IWB1 547 aa21.95■■□□□ 1.1
SHANK1-201ENST00000293441 NOP58Q9Y2X3 529 aaKnown RBP21.95■■□□□ 1.1
SHANK1-201ENST00000293441 SPAG9O60271 1321 aaKnown RBP21.95■■□□□ 1.1
SHANK1-201ENST00000293441 NGDNQ8NEJ9 315 aaKnown RBP21.94■■□□□ 1.1
SHANK1-201ENST00000293441 RAB3GAP2Q9H2M9 1393 aa21.94■■□□□ 1.1
SHANK1-201ENST00000293441 GNL2Q13823 731 aaKnown RBP21.94■■□□□ 1.1
SHANK1-201ENST00000293441 NUTM2FA1L443 756 aa21.93■■□□□ 1.1
SHANK1-201ENST00000293441 CHMP3Q9Y3E7 222 aa21.92■■□□□ 1.1
SHANK1-201ENST00000293441 KIAA1211Q6ZU35 1233 aa21.92■■□□□ 1.1
SHANK1-201ENST00000293441 WIZO95785 1651 aa21.91■■□□□ 1.1
SHANK1-201ENST00000293441 TMX4Q9H1E5 349 aaPredicted RBP21.91■■□□□ 1.1
SHANK1-201ENST00000293441 CCER2I3L3R5 266 aa21.91■■□□□ 1.1
SHANK1-201ENST00000293441 NCBP3Q53F19 620 aaKnown RBP21.9■■□□□ 1.1
SHANK1-201ENST00000293441 TERF2IPQ9NYB0 399 aa21.89■■□□□ 1.1
SHANK1-201ENST00000293441 FHOD3Q2V2M9 1422 aa21.89■■□□□ 1.1
SHANK1-201ENST00000293441 LTV1Q96GA3 475 aaPredicted RBP21.89■■□□□ 1.09
SHANK1-201ENST00000293441 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.87■■□□□ 1.09
SHANK1-201ENST00000293441 STK31Q9BXU1 1019 aa21.87■■□□□ 1.09
SHANK1-201ENST00000293441 RALBP1Q15311 655 aa21.87■■□□□ 1.09
SHANK1-201ENST00000293441 TAF7LQ5H9L4 462 aa21.87■■□□□ 1.09
SHANK1-201ENST00000293441 CFAP44Q96MT7 982 aa21.86■■□□□ 1.09
SHANK1-201ENST00000293441 NRDCO43847 1150 aa21.86■■□□□ 1.09
SHANK1-201ENST00000293441 GORABQ5T7V8 394 aa21.86■■□□□ 1.09
SHANK1-201ENST00000293441 AMPHP49418 695 aa21.86■■□□□ 1.09
SHANK1-201ENST00000293441 CCDC146Q8IYE0 955 aa21.85■■□□□ 1.09
SHANK1-201ENST00000293441 NAP1L5Q96NT1 182 aaPredicted RBP21.84■■□□□ 1.09
SHANK1-201ENST00000293441 RCAN3Q9UKA8 241 aa21.84■■□□□ 1.09
SHANK1-201ENST00000293441 CCDC18Q5T9S5 1454 aa21.84■■□□□ 1.09
SHANK1-201ENST00000293441 JPH4Q96JJ6 628 aa21.84■■□□□ 1.09
SHANK1-201ENST00000293441 RAPGEF2Q9Y4G8 1499 aa21.83■■□□□ 1.08
SHANK1-201ENST00000293441 TRAK1Q9UPV9 953 aa21.82■■□□□ 1.08
SHANK1-201ENST00000293441 DRC7Q8IY82 874 aa21.82■■□□□ 1.08
SHANK1-201ENST00000293441 SLC4A10Q6U841 1118 aa21.81■■□□□ 1.08
SHANK1-201ENST00000293441 SMC4Q9NTJ3 1288 aa21.81■■□□□ 1.08
SHANK1-201ENST00000293441 TOP2AP11388 1531 aaKnown RBP21.81■■□□□ 1.08
SHANK1-201ENST00000293441 ERICH6BQ5W0A0 696 aa21.8■■□□□ 1.08
SHANK1-201ENST00000293441 RWDD1Q9H446 243 aaPredicted RBP21.8■■□□□ 1.08
SHANK1-201ENST00000293441 CADPSQ9ULU8 1353 aa21.79■■□□□ 1.08
SHANK1-201ENST00000293441 G3V3G9 751 aa21.79■■□□□ 1.08
SHANK1-201ENST00000293441 DCAF8Q5TAQ9 597 aa21.79■■□□□ 1.08
SHANK1-201ENST00000293441 RTN4Q9NQC3 1192 aaKnown RBP21.79■■□□□ 1.08
SHANK1-201ENST00000293441 RSPH4AQ5TD94 716 aa21.77■■□□□ 1.08
SHANK1-201ENST00000293441 L3MBTL2Q969R5 705 aa21.77■■□□□ 1.08
SHANK1-201ENST00000293441 TRIM6-TRIM34B2RNG4 842 aa21.76■■□□□ 1.07
SHANK1-201ENST00000293441 CHMP4AQ9BY43 222 aa21.76■■□□□ 1.07
SHANK1-201ENST00000293441 GPATCH3Q96I76 525 aa21.76■■□□□ 1.07
SHANK1-201ENST00000293441 CYB5RLQ6IPT4 315 aa21.74■■□□□ 1.07
SHANK1-201ENST00000293441 CLUAP1Q96AJ1 413 aa21.72■■□□□ 1.07
SHANK1-201ENST00000293441 PMFBP1Q8TBY8 1022 aa21.71■■□□□ 1.07
SHANK1-201ENST00000293441 HSP90B1P14625 803 aaKnown RBP21.71■■□□□ 1.07
SHANK1-201ENST00000293441 GTF2E1P29083 439 aaPredicted RBP21.7■■□□□ 1.07
SHANK1-201ENST00000293441 LMOD3Q0VAK6 560 aa21.7■■□□□ 1.06
SHANK1-201ENST00000293441 HMMRO75330 724 aa21.69■■□□□ 1.06
SHANK1-201ENST00000293441 CHAF1AQ13111 956 aaPredicted RBP21.68■■□□□ 1.06
SHANK1-201ENST00000293441 MFAP1P55081 439 aaKnown RBP21.68■■□□□ 1.06
SHANK1-201ENST00000293441 EVA1CP58658 441 aa21.68■■□□□ 1.06
SHANK1-201ENST00000293441 FRAT2O75474 233 aaPredicted RBP21.67■■□□□ 1.06
SHANK1-201ENST00000293441 HDAC5Q9UQL6 1122 aa21.67■■□□□ 1.06
SHANK1-201ENST00000293441 MSNP26038 577 aaKnown RBP21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms