RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 ARAP3Q8WWN8 1544 aa19.92■□□□□ 0.78
SS18-202ENST00000269138 SUPT6HQ7KZ85 1726 aaKnown RBP19.92■□□□□ 0.78
SS18-202ENST00000269138 PHLDB1Q86UU1 1377 aa19.92■□□□□ 0.78
SS18-202ENST00000269138 CDC42BPAQ5VT25 1732 aa19.91■□□□□ 0.78
SS18-202ENST00000269138 PPARGC1BQ86YN6 1023 aaKnown RBP19.91■□□□□ 0.78
SS18-202ENST00000269138 CDC42BPBQ9Y5S2 1711 aa19.9■□□□□ 0.78
SS18-202ENST00000269138 PREX2Q70Z35 1606 aa19.9■□□□□ 0.78
SS18-202ENST00000269138 CFDP1Q9UEE9 299 aaPredicted RBP19.9■□□□□ 0.78
SS18-202ENST00000269138 ZNF777Q9ULD5 760 aaPredicted RBP19.9■□□□□ 0.78
SS18-202ENST00000269138 RAPGEF3O95398 923 aa19.89■□□□□ 0.77
SS18-202ENST00000269138 CFAP74Q9C0B2 1584 aa19.86■□□□□ 0.77
SS18-202ENST00000269138 SCAPERQ9BY12 1400 aa19.86■□□□□ 0.77
SS18-202ENST00000269138 ADGRL1O94910 1474 aa19.86■□□□□ 0.77
SS18-202ENST00000269138 ZNF644Q9H582 1327 aaPredicted RBP19.86■□□□□ 0.77
SS18-202ENST00000269138 DENND4BO75064 1496 aaPredicted RBP19.84■□□□□ 0.77
SS18-202ENST00000269138 SAMD9LQ8IVG5 1584 aa19.82■□□□□ 0.76
SS18-202ENST00000269138 ARHGEF12Q9NZN5 1544 aa19.82■□□□□ 0.76
SS18-202ENST00000269138 HNRNPMP52272 730 aaKnown RBP eCLIP19.81■□□□□ 0.76
SS18-202ENST00000269138 MYOM3Q5VTT5 1437 aa19.8■□□□□ 0.76
SS18-202ENST00000269138 ITSN2Q9NZM3 1697 aa19.8■□□□□ 0.76
SS18-202ENST00000269138 AFAP1Q8N556 730 aa19.8■□□□□ 0.76
SS18-202ENST00000269138 FRMPD1Q5SYB0 1578 aa19.8■□□□□ 0.76
SS18-202ENST00000269138 ABCC1P33527 1531 aa19.79■□□□□ 0.76
SS18-202ENST00000269138 POGZQ7Z3K3 1410 aa19.78■□□□□ 0.76
SS18-202ENST00000269138 TRAPPC8Q9Y2L5 1435 aa19.78■□□□□ 0.76
SS18-202ENST00000269138 RICTORQ6R327 1708 aa19.76■□□□□ 0.75
SS18-202ENST00000269138 SYCP2Q9BX26 1530 aa19.75■□□□□ 0.75
SS18-202ENST00000269138 KIAA1107Q9UPP5 1409 aa19.75■□□□□ 0.75
SS18-202ENST00000269138 MIA2Q96PC5 1412 aa19.74■□□□□ 0.75
SS18-202ENST00000269138 CAMSAP2Q08AD1 1489 aa19.74■□□□□ 0.75
SS18-202ENST00000269138 PLEKHH2Q8IVE3 1493 aa19.74■□□□□ 0.75
SS18-202ENST00000269138 MBD5Q9P267 1494 aa19.72■□□□□ 0.75
SS18-202ENST00000269138 FGD6Q6ZV73 1430 aa19.72■□□□□ 0.75
SS18-202ENST00000269138 ZNF518AQ6AHZ1 1483 aa19.72■□□□□ 0.75
SS18-202ENST00000269138 ZMYM4Q5VZL5 1548 aa19.69■□□□□ 0.74
SS18-202ENST00000269138 YEATS2Q9ULM3 1422 aa19.69■□□□□ 0.74
SS18-202ENST00000269138 KDM5CP41229 1560 aa19.68■□□□□ 0.74
SS18-202ENST00000269138 MYT1LQ9UL68 1186 aa19.67■□□□□ 0.74
SS18-202ENST00000269138 PTPN23Q9H3S7 1636 aa19.67■□□□□ 0.74
SS18-202ENST00000269138 SPAG9O60271 1321 aaKnown RBP19.65■□□□□ 0.74
SS18-202ENST00000269138 TCOF1Q13428 1488 aaKnown RBP19.65■□□□□ 0.74
SS18-202ENST00000269138 MAGI2Q86UL8 1455 aa19.65■□□□□ 0.74
SS18-202ENST00000269138 ZFYVE16Q7Z3T8 1539 aa19.64■□□□□ 0.73
SS18-202ENST00000269138 FAM50AQ14320 339 aaKnown RBP19.64■□□□□ 0.73
SS18-202ENST00000269138 MLH3Q9UHC1 1453 aa19.64■□□□□ 0.73
SS18-202ENST00000269138 RSPH4AQ5TD94 716 aa19.63■□□□□ 0.73
SS18-202ENST00000269138 CCDC141Q6ZP82 1450 aa19.63■□□□□ 0.73
SS18-202ENST00000269138 ARHGEF5Q12774 1597 aa19.61■□□□□ 0.73
SS18-202ENST00000269138 ARHGEF40Q8TER5 1519 aa19.61■□□□□ 0.73
SS18-202ENST00000269138 HECW2Q9P2P5 1572 aa19.61■□□□□ 0.73
SS18-202ENST00000269138 ABCC5O15440 1437 aa19.58■□□□□ 0.73
SS18-202ENST00000269138 KIDINS220Q9ULH0 1771 aa19.58■□□□□ 0.73
SS18-202ENST00000269138 TSPY4P0CV99 314 aa19.58■□□□□ 0.73
SS18-202ENST00000269138 TSPY10P0CW01 314 aa19.58■□□□□ 0.73
SS18-202ENST00000269138 ATP10AO60312 1499 aa19.58■□□□□ 0.72
SS18-202ENST00000269138 ATP7AQ04656 1500 aa19.57■□□□□ 0.72
SS18-202ENST00000269138 DIP2CQ9Y2E4 1556 aa19.57■□□□□ 0.72
SS18-202ENST00000269138 ABCA6Q8N139 1617 aa19.56■□□□□ 0.72
SS18-202ENST00000269138 INO80Q9ULG1 1556 aaPredicted RBP19.56■□□□□ 0.72
SS18-202ENST00000269138 RTEL1-TNFRSF6BF6WH68 1400 aa19.55■□□□□ 0.72
SS18-202ENST00000269138 DAPK1P53355 1430 aa19.55■□□□□ 0.72
SS18-202ENST00000269138 ARID4BQ4LE39 1312 aaPredicted RBP19.54■□□□□ 0.72
SS18-202ENST00000269138 C9orf84Q5VXU9 1444 aa19.54■□□□□ 0.72
SS18-202ENST00000269138 RRBP1Q9P2E9 1410 aaKnown RBP19.54■□□□□ 0.72
SS18-202ENST00000269138 CHIC2Q9UKJ5 165 aa19.53■□□□□ 0.72
SS18-202ENST00000269138 DNMT1P26358 1616 aaKnown RBP19.53■□□□□ 0.72
SS18-202ENST00000269138 SIGLEC1Q9BZZ2 1709 aa19.52■□□□□ 0.72
SS18-202ENST00000269138 ITGAEP38570 1179 aa19.51■□□□□ 0.71
SS18-202ENST00000269138 PTPRKQ15262 1439 aa19.5■□□□□ 0.71
SS18-202ENST00000269138 MAST1Q9Y2H9 1570 aa19.5■□□□□ 0.71
SS18-202ENST00000269138 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.5■□□□□ 0.71
SS18-202ENST00000269138 KDM4FA0A1W2PPD8 638 aa19.49■□□□□ 0.71
SS18-202ENST00000269138 SHANK2Q9UPX8 1470 aa19.48■□□□□ 0.71
SS18-202ENST00000269138 MLECQ14165 292 aa19.48■□□□□ 0.71
SS18-202ENST00000269138 A2MP01023 1474 aa19.48■□□□□ 0.71
SS18-202ENST00000269138 CROCC2H7BZ55 1655 aa19.47■□□□□ 0.71
SS18-202ENST00000269138 REREQ9P2R6 1566 aa19.47■□□□□ 0.71
SS18-202ENST00000269138 RRP7BPQ9NSQ0 103 aa19.46■□□□□ 0.71
SS18-202ENST00000269138 DHX29Q7Z478 1369 aaKnown RBP19.46■□□□□ 0.71
SS18-202ENST00000269138 ADGBQ8N7X0 1667 aa19.43■□□□□ 0.7
SS18-202ENST00000269138 AGLP35573 1532 aa19.43■□□□□ 0.7
SS18-202ENST00000269138 PLXNC1O60486 1568 aa19.42■□□□□ 0.7
SS18-202ENST00000269138 ANKRD30AQ9BXX3 1397 aa19.42■□□□□ 0.7
SS18-202ENST00000269138 KIF15Q9NS87 1388 aa19.42■□□□□ 0.7
SS18-202ENST00000269138 NCOA1Q15788 1441 aa19.42■□□□□ 0.7
SS18-202ENST00000269138 ADGRL2O95490 1459 aa19.4■□□□□ 0.7
SS18-202ENST00000269138 BCORL1Q5H9F3 1711 aa19.4■□□□□ 0.7
SS18-202ENST00000269138 KIF3BO15066 747 aa19.39■□□□□ 0.69
SS18-202ENST00000269138 GGT6Q6P531 493 aa19.37■□□□□ 0.69
SS18-202ENST00000269138 DUOX2Q9NRD8 1548 aa19.37■□□□□ 0.69
SS18-202ENST00000269138 ADAMTSL3P82987 1691 aa19.37■□□□□ 0.69
SS18-202ENST00000269138 ROCK1Q13464 1354 aa19.36■□□□□ 0.69
SS18-202ENST00000269138 MADDQ8WXG6 1647 aa19.34■□□□□ 0.69
SS18-202ENST00000269138 ERBINQ96RT1 1412 aa19.31■□□□□ 0.68
SS18-202ENST00000269138 ANKRD50Q9ULJ7 1429 aa19.3■□□□□ 0.68
SS18-202ENST00000269138 PLPPR3Q6T4P5 718 aa19.28■□□□□ 0.68
SS18-202ENST00000269138 ESF1Q9H501 851 aaKnown RBP19.28■□□□□ 0.68
SS18-202ENST00000269138 RIMS1Q86UR5 1692 aaKnown RBP19.28■□□□□ 0.68
SS18-202ENST00000269138 PTPRMP28827 1452 aa19.27■□□□□ 0.68
SS18-202ENST00000269138 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.27■□□□□ 0.682e-7■■■□□ 19
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms