RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 DCAF11Q8TEB1 546 aa11.87□□□□□ -0.51
VAPB-201ENST00000265619 CUL7Q14999 1698 aa11.87□□□□□ -0.51
VAPB-201ENST00000265619 GSE1Q14687 1217 aa11.86□□□□□ -0.51
VAPB-201ENST00000265619 PLPPR3Q6T4P5 718 aa11.85□□□□□ -0.51
VAPB-201ENST00000265619 PCF11O94913 1555 aaKnown RBP11.85□□□□□ -0.51
VAPB-201ENST00000265619 JPH4Q96JJ6 628 aa11.85□□□□□ -0.51
VAPB-201ENST00000265619 EIF4G3O43432 1585 aaKnown RBP11.85□□□□□ -0.51
VAPB-201ENST00000265619 PBRM1Q86U86 1689 aa11.84□□□□□ -0.51
VAPB-201ENST00000265619 PHLDB1Q86UU1 1377 aa11.83□□□□□ -0.52
VAPB-201ENST00000265619 SLC4A3P48751 1232 aa11.83□□□□□ -0.52
VAPB-201ENST00000265619 SKAP1Q86WV1 359 aa11.82□□□□□ -0.52
VAPB-201ENST00000265619 USP35Q9P2H5 1018 aa11.82□□□□□ -0.52
VAPB-201ENST00000265619 RSPH6AQ9H0K4 717 aa11.82□□□□□ -0.52
VAPB-201ENST00000265619 FMN1Q68DA7 1419 aa11.81□□□□□ -0.52
VAPB-201ENST00000265619 CTTNBP2Q8WZ74 1663 aa11.81□□□□□ -0.52
VAPB-201ENST00000265619 RRP7BPQ9NSQ0 103 aa11.81□□□□□ -0.52
VAPB-201ENST00000265619 NFKBIBQ15653 356 aa11.79□□□□□ -0.52
VAPB-201ENST00000265619 SETD5Q9C0A6 1442 aa11.79□□□□□ -0.52
VAPB-201ENST00000265619 ADAMTS12P58397 1594 aa11.79□□□□□ -0.52
VAPB-201ENST00000265619 GRIN2AQ12879 1464 aa11.78□□□□□ -0.52
VAPB-201ENST00000265619 LRRC9Q6ZRR7 1453 aa11.78□□□□□ -0.52
VAPB-201ENST00000265619 ZBED9Q6R2W3 1325 aa11.78□□□□□ -0.52
VAPB-201ENST00000265619 IQGAP2Q13576 1575 aa11.78□□□□□ -0.52
VAPB-201ENST00000265619 RRAGDQ9NQL2 400 aaPredicted RBP11.78□□□□□ -0.52
VAPB-201ENST00000265619 TIAM1Q13009 1591 aa11.77□□□□□ -0.52
VAPB-201ENST00000265619 CDK13Q14004 1512 aaKnown RBP11.77□□□□□ -0.53
VAPB-201ENST00000265619 PDE4AP27815 886 aa11.77□□□□□ -0.53
VAPB-201ENST00000265619 ARXQ96QS3 562 aa11.76□□□□□ -0.53
VAPB-201ENST00000265619 MRS2Q9HD23 443 aa11.76□□□□□ -0.53
VAPB-201ENST00000265619 CNGB1Q14028 1251 aaPredicted RBP11.75□□□□□ -0.53
VAPB-201ENST00000265619 FAM43AQ8N2R8 423 aa11.75□□□□□ -0.53
VAPB-201ENST00000265619 CASKIN1Q8WXD9 1431 aa11.75□□□□□ -0.53
VAPB-201ENST00000265619 PPM1GO15355 546 aaPredicted RBP11.74□□□□□ -0.53
VAPB-201ENST00000265619 EFCAB5A4FU69 1503 aa11.73□□□□□ -0.53
VAPB-201ENST00000265619 ZNF644Q9H582 1327 aaPredicted RBP11.73□□□□□ -0.53
VAPB-201ENST00000265619 SYNJ2O15056 1496 aa11.73□□□□□ -0.53
VAPB-201ENST00000265619 BACH2Q9BYV9 841 aa11.73□□□□□ -0.53
VAPB-201ENST00000265619 FYCO1Q9BQS8 1478 aa11.72□□□□□ -0.53
VAPB-201ENST00000265619 PRKRIP1Q9H875 184 aaPredicted RBP11.72□□□□□ -0.53
VAPB-201ENST00000265619 PLB1Q6P1J6 1458 aa11.71□□□□□ -0.53
VAPB-201ENST00000265619 RNF123Q5XPI4 1314 aa11.71□□□□□ -0.53
VAPB-201ENST00000265619 FRAT2O75474 233 aaPredicted RBP11.71□□□□□ -0.53
VAPB-201ENST00000265619 KLHL34Q8N239 644 aa11.71□□□□□ -0.53
VAPB-201ENST00000265619 HSPA5P11021 654 aaKnown RBP11.71□□□□□ -0.54
VAPB-201ENST00000265619 KIAA0586Q9BVV6 1533 aa11.7□□□□□ -0.54
VAPB-201ENST00000265619 MAGI1Q96QZ7 1491 aaPredicted RBP11.69□□□□□ -0.54
VAPB-201ENST00000265619 CARMIL2Q6F5E8 1435 aa11.69□□□□□ -0.54
VAPB-201ENST00000265619 EXOC6Q8TAG9 804 aa11.69□□□□□ -0.54
VAPB-201ENST00000265619 TONSLQ96HA7 1378 aa11.69□□□□□ -0.54
VAPB-201ENST00000265619 PRG4Q92954 1404 aaPredicted RBP11.69□□□□□ -0.54
VAPB-201ENST00000265619 PLEKHD1A6NEE1 506 aa11.69□□□□□ -0.54
VAPB-201ENST00000265619 SMG6Q86US8 1419 aaKnown RBP11.68□□□□□ -0.54
VAPB-201ENST00000265619 KDM5BQ9UGL1 1544 aa11.68□□□□□ -0.54
VAPB-201ENST00000265619 CEP170Q5SW79 1584 aa11.68□□□□□ -0.54
VAPB-201ENST00000265619 CFDP1Q9UEE9 299 aaPredicted RBP11.68□□□□□ -0.54
VAPB-201ENST00000265619 A0A0U1RQG5 324 aaPredicted RBP11.67□□□□□ -0.54
VAPB-201ENST00000265619 NUDCQ9Y266 331 aa11.67□□□□□ -0.54
VAPB-201ENST00000265619 NCOA2Q15596 1464 aa11.67□□□□□ -0.54
VAPB-201ENST00000265619 FOXD1Q16676 465 aa11.66□□□□□ -0.54
VAPB-201ENST00000265619 GLIPR1L2Q4G1C9 344 aa11.66□□□□□ -0.54
VAPB-201ENST00000265619 CNTLNQ9NXG0 1405 aa11.65□□□□□ -0.54
VAPB-201ENST00000265619 PTPRGP23470 1445 aa11.65□□□□□ -0.54
VAPB-201ENST00000265619 EPRSP07814 1512 aaKnown RBP11.65□□□□□ -0.54
VAPB-201ENST00000265619 DISP1Q96F81 1524 aa11.64□□□□□ -0.55
VAPB-201ENST00000265619 FGD6Q6ZV73 1430 aa11.64□□□□□ -0.55
VAPB-201ENST00000265619 SAMD9Q5K651 1589 aa11.64□□□□□ -0.55
VAPB-201ENST00000265619 TCERG1O14776 1098 aaKnown RBP11.63□□□□□ -0.55
VAPB-201ENST00000265619 HSP90AA2PQ14568 343 aaPredicted RBP11.63□□□□□ -0.55
VAPB-201ENST00000265619 POGKQ9P215 609 aa11.63□□□□□ -0.55
VAPB-201ENST00000265619 NAP1L5Q96NT1 182 aaPredicted RBP11.62□□□□□ -0.55
VAPB-201ENST00000265619 ARID4BQ4LE39 1312 aaPredicted RBP11.62□□□□□ -0.55
VAPB-201ENST00000265619 MAGI3Q5TCQ9 1506 aa11.61□□□□□ -0.55
VAPB-201ENST00000265619 KIAA0556O60303 1618 aa11.61□□□□□ -0.55
VAPB-201ENST00000265619 MYOM3Q5VTT5 1437 aa11.6□□□□□ -0.55
VAPB-201ENST00000265619 HECW1Q76N89 1606 aa11.6□□□□□ -0.55
VAPB-201ENST00000265619 HNRNPMP52272 730 aaKnown RBP eCLIP11.59□□□□□ -0.558e-7■■■■□ 23.4
VAPB-201ENST00000265619 CFAP43Q8NDM7 1665 aa11.59□□□□□ -0.55
VAPB-201ENST00000265619 LRRIQ1Q96JM4 1722 aa11.59□□□□□ -0.55
VAPB-201ENST00000265619 CHD1O14646 1710 aa11.59□□□□□ -0.55
VAPB-201ENST00000265619 NUP153P49790 1475 aaKnown RBP11.59□□□□□ -0.55
VAPB-201ENST00000265619 UGGT2Q9NYU1 1516 aa11.58□□□□□ -0.56
VAPB-201ENST00000265619 RBM10P98175 930 aaKnown RBP11.58□□□□□ -0.56
VAPB-201ENST00000265619 ZNF326Q5BKZ1 582 aaKnown RBP11.58□□□□□ -0.56
VAPB-201ENST00000265619 CCDC18Q5T9S5 1454 aa11.58□□□□□ -0.56
VAPB-201ENST00000265619 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.57□□□□□ -0.562e-8■□□□□ 8.9
VAPB-201ENST00000265619 NUP160Q12769 1436 aa11.56□□□□□ -0.56
VAPB-201ENST00000265619 PTPRKQ15262 1439 aa11.56□□□□□ -0.56
VAPB-201ENST00000265619 CCDC7Q96M83 1385 aa11.56□□□□□ -0.56
VAPB-201ENST00000265619 ERCC6L2Q5T890 1561 aa11.56□□□□□ -0.56
VAPB-201ENST00000265619 RRP1P56182 461 aaKnown RBP11.56□□□□□ -0.56
VAPB-201ENST00000265619 TULP1O00294 542 aaPredicted RBP11.56□□□□□ -0.56
VAPB-201ENST00000265619 SUPT6HQ7KZ85 1726 aaKnown RBP11.55□□□□□ -0.56
VAPB-201ENST00000265619 HSP90AA1P07900 732 aaKnown RBP11.55□□□□□ -0.56
VAPB-201ENST00000265619 EHBP1L1Q8N3D4 1523 aa11.55□□□□□ -0.56
VAPB-201ENST00000265619 RRP9O43818 475 aaKnown RBP11.55□□□□□ -0.56
VAPB-201ENST00000265619 PLIN1O60240 522 aa11.55□□□□□ -0.56
VAPB-201ENST00000265619 RAPGEF6Q8TEU7 1601 aa11.54□□□□□ -0.56
VAPB-201ENST00000265619 MS4A1P11836 297 aa11.54□□□□□ -0.56
VAPB-201ENST00000265619 DDRGK1Q96HY6 314 aa11.54□□□□□ -0.56
VAPB-201ENST00000265619 PANK2Q9BZ23 570 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms