RNA–Protein interactions for RNA: ENST00000263741.11

SDF4-201, Transcript of stromal cell derived factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDF4, Length 2,079 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-201ENST00000263741 GPATCH8Q9UKJ3 1502 aaKnown RBP28.68■■■□□ 2.18
SDF4-201ENST00000263741 ARAP3Q8WWN8 1544 aa28.67■■■□□ 2.18
SDF4-201ENST00000263741 PPARGC1BQ86YN6 1023 aaKnown RBP28.66■■■□□ 2.18
SDF4-201ENST00000263741 CCNB3Q8WWL7 1395 aa28.66■■■□□ 2.18
SDF4-201ENST00000263741 COL17A1Q9UMD9 1497 aaPredicted RBP28.66■■■□□ 2.18
SDF4-201ENST00000263741 NEO1Q92859 1461 aa28.64■■■□□ 2.18
SDF4-201ENST00000263741 AKNAQ7Z591 1439 aa28.61■■■□□ 2.17
SDF4-201ENST00000263741 SAMD9LQ8IVG5 1584 aa28.6■■■□□ 2.17
SDF4-201ENST00000263741 ADGRL1O94910 1474 aa28.58■■■□□ 2.16
SDF4-201ENST00000263741 EFCAB2Q5VUJ9 269 aa28.56■■■□□ 2.16
SDF4-201ENST00000263741 FRMPD1Q5SYB0 1578 aa28.56■■■□□ 2.16
SDF4-201ENST00000263741 ZNF777Q9ULD5 760 aaPredicted RBP28.55■■■□□ 2.16
SDF4-201ENST00000263741 RICTORQ6R327 1708 aa28.55■■■□□ 2.16
SDF4-201ENST00000263741 ABCC1P33527 1531 aa28.55■■■□□ 2.16
SDF4-201ENST00000263741 PHLDB1Q86UU1 1377 aa28.54■■■□□ 2.16
SDF4-201ENST00000263741 CFDP1Q9UEE9 299 aaPredicted RBP28.54■■■□□ 2.16
SDF4-201ENST00000263741 SYCP2Q9BX26 1530 aa28.51■■■□□ 2.15
SDF4-201ENST00000263741 MYOM3Q5VTT5 1437 aa28.51■■■□□ 2.15
SDF4-201ENST00000263741 SCAPERQ9BY12 1400 aa28.5■■■□□ 2.15
SDF4-201ENST00000263741 ARHGEF12Q9NZN5 1544 aa28.5■■■□□ 2.15
SDF4-201ENST00000263741 ZNF644Q9H582 1327 aaPredicted RBP28.49■■■□□ 2.15
SDF4-201ENST00000263741 RAPGEF3O95398 923 aa28.49■■■□□ 2.15
SDF4-201ENST00000263741 DENND4BO75064 1496 aaPredicted RBP28.47■■■□□ 2.15
SDF4-201ENST00000263741 CAMSAP2Q08AD1 1489 aa28.46■■■□□ 2.15
SDF4-201ENST00000263741 POGZQ7Z3K3 1410 aa28.45■■■□□ 2.14
SDF4-201ENST00000263741 PTPN23Q9H3S7 1636 aa28.42■■■□□ 2.14
SDF4-201ENST00000263741 TRAPPC8Q9Y2L5 1435 aa28.41■■■□□ 2.14
SDF4-201ENST00000263741 FGD6Q6ZV73 1430 aa28.4■■■□□ 2.14
SDF4-201ENST00000263741 HNRNPMP52272 730 aaKnown RBP eCLIP28.38■■■□□ 2.139e-7■■□□□ 13.3
SDF4-201ENST00000263741 MIA2Q96PC5 1412 aa28.37■■■□□ 2.13
SDF4-201ENST00000263741 PLEKHH2Q8IVE3 1493 aa28.37■■■□□ 2.13
SDF4-201ENST00000263741 ZNF518AQ6AHZ1 1483 aa28.37■■■□□ 2.13
SDF4-201ENST00000263741 ZMYM4Q5VZL5 1548 aa28.36■■■□□ 2.13
SDF4-201ENST00000263741 KDM5CP41229 1560 aa28.36■■■□□ 2.13
SDF4-201ENST00000263741 AFAP1Q8N556 730 aa28.36■■■□□ 2.13
SDF4-201ENST00000263741 KIAA1107Q9UPP5 1409 aa28.34■■■□□ 2.13
SDF4-201ENST00000263741 MBD5Q9P267 1494 aa28.33■■■□□ 2.13
SDF4-201ENST00000263741 HECW2Q9P2P5 1572 aa28.32■■■□□ 2.12
SDF4-201ENST00000263741 ARHGEF40Q8TER5 1519 aa28.3■■■□□ 2.12
SDF4-201ENST00000263741 TCOF1Q13428 1488 aaKnown RBP28.29■■■□□ 2.12
SDF4-201ENST00000263741 KIDINS220Q9ULH0 1771 aa28.29■■■□□ 2.12
SDF4-201ENST00000263741 ARHGEF5Q12774 1597 aa28.28■■■□□ 2.12
SDF4-201ENST00000263741 ZFYVE16Q7Z3T8 1539 aa28.28■■■□□ 2.12
SDF4-201ENST00000263741 YEATS2Q9ULM3 1422 aa28.28■■■□□ 2.12
SDF4-201ENST00000263741 CCDC141Q6ZP82 1450 aa28.27■■■□□ 2.12
SDF4-201ENST00000263741 CROCC2H7BZ55 1655 aa28.26■■■□□ 2.12
SDF4-201ENST00000263741 ABCA6Q8N139 1617 aa28.26■■■□□ 2.11
SDF4-201ENST00000263741 INO80Q9ULG1 1556 aaPredicted RBP28.26■■■□□ 2.11
SDF4-201ENST00000263741 DNMT1P26358 1616 aaKnown RBP28.23■■■□□ 2.11
SDF4-201ENST00000263741 FAM50AQ14320 339 aaKnown RBP28.23■■■□□ 2.11
SDF4-201ENST00000263741 MYT1LQ9UL68 1186 aa28.23■■■□□ 2.11
SDF4-201ENST00000263741 ATP7AQ04656 1500 aa28.22■■■□□ 2.11
SDF4-201ENST00000263741 SIGLEC1Q9BZZ2 1709 aa28.22■■■□□ 2.11
SDF4-201ENST00000263741 DIP2CQ9Y2E4 1556 aa28.21■■■□□ 2.11
SDF4-201ENST00000263741 MLH3Q9UHC1 1453 aa28.2■■■□□ 2.1
SDF4-201ENST00000263741 MAGI2Q86UL8 1455 aa28.19■■■□□ 2.1
SDF4-201ENST00000263741 SPAG9O60271 1321 aaKnown RBP28.19■■■□□ 2.1
SDF4-201ENST00000263741 ADGBQ8N7X0 1667 aa28.16■■■□□ 2.1
SDF4-201ENST00000263741 ABCC5O15440 1437 aa28.15■■■□□ 2.1
SDF4-201ENST00000263741 DAPK1P53355 1430 aa28.15■■■□□ 2.1
SDF4-201ENST00000263741 RRBP1Q9P2E9 1410 aaKnown RBP28.14■■■□□ 2.1
SDF4-201ENST00000263741 MAST1Q9Y2H9 1570 aa28.12■■■□□ 2.09
SDF4-201ENST00000263741 C9orf84Q5VXU9 1444 aa28.12■■■□□ 2.09
SDF4-201ENST00000263741 ATP10AO60312 1499 aa28.09■■■□□ 2.09
SDF4-201ENST00000263741 SHANK2Q9UPX8 1470 aa28.08■■■□□ 2.09
SDF4-201ENST00000263741 RSPH4AQ5TD94 716 aa28.07■■■□□ 2.08
SDF4-201ENST00000263741 TSPY4P0CV99 314 aa28.06■■■□□ 2.08
SDF4-201ENST00000263741 TSPY10P0CW01 314 aa28.06■■■□□ 2.08
SDF4-201ENST00000263741 ITGAEP38570 1179 aa28.06■■■□□ 2.08
SDF4-201ENST00000263741 RTEL1-TNFRSF6BF6WH68 1400 aa28.06■■■□□ 2.08
SDF4-201ENST00000263741 PLXNC1O60486 1568 aa28.05■■■□□ 2.08
SDF4-201ENST00000263741 PTPRKQ15262 1439 aa28.04■■■□□ 2.08
SDF4-201ENST00000263741 CHIC2Q9UKJ5 165 aa28.04■■■□□ 2.08
SDF4-201ENST00000263741 REREQ9P2R6 1566 aa28.02■■■□□ 2.08
SDF4-201ENST00000263741 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28■■■□□ 2.072e-6■■■■■ 26.9
SDF4-201ENST00000263741 A2MP01023 1474 aa28■■■□□ 2.07
SDF4-201ENST00000263741 ARID4BQ4LE39 1312 aaPredicted RBP28■■■□□ 2.07
SDF4-201ENST00000263741 BCORL1Q5H9F3 1711 aa27.99■■■□□ 2.07
SDF4-201ENST00000263741 ADGRL2O95490 1459 aa27.94■■■□□ 2.06
SDF4-201ENST00000263741 KIF15Q9NS87 1388 aa27.93■■■□□ 2.06
SDF4-201ENST00000263741 RRP7BPQ9NSQ0 103 aa27.93■■■□□ 2.06
SDF4-201ENST00000263741 MLECQ14165 292 aa27.92■■■□□ 2.06
SDF4-201ENST00000263741 AGLP35573 1532 aa27.91■■■□□ 2.06
SDF4-201ENST00000263741 ANKRD30AQ9BXX3 1397 aa27.9■■■□□ 2.06
SDF4-201ENST00000263741 NCOA1Q15788 1441 aa27.9■■■□□ 2.06
SDF4-201ENST00000263741 DUOX2Q9NRD8 1548 aa27.9■■■□□ 2.06
SDF4-201ENST00000263741 MADDQ8WXG6 1647 aa27.9■■■□□ 2.06
SDF4-201ENST00000263741 FER1L4A9Z1Z3 1794 aa27.89■■■□□ 2.06
SDF4-201ENST00000263741 ADAMTSL3P82987 1691 aa27.89■■■□□ 2.06
SDF4-201ENST00000263741 DHX29Q7Z478 1369 aaKnown RBP27.88■■■□□ 2.05
SDF4-201ENST00000263741 RIMS1Q86UR5 1692 aaKnown RBP27.85■■■□□ 2.05
SDF4-201ENST00000263741 EIF2AK4Q9P2K8 1649 aaKnown RBP27.85■■■□□ 2.05
SDF4-201ENST00000263741 KDM4FA0A1W2PPD8 638 aa27.83■■■□□ 2.05
SDF4-201ENST00000263741 ROCK1Q13464 1354 aa27.81■■■□□ 2.04
SDF4-201ENST00000263741 GCC2Q8IWJ2 1684 aa27.81■■■□□ 2.04
SDF4-201ENST00000263741 KIF3BO15066 747 aa27.8■■■□□ 2.04
SDF4-201ENST00000263741 RNF17Q9BXT8 1623 aaKnown RBP27.79■■■□□ 2.04
SDF4-201ENST00000263741 ERBINQ96RT1 1412 aa27.79■■■□□ 2.04
SDF4-201ENST00000263741 MROH1Q8NDA8 1641 aa27.77■■■□□ 2.04
SDF4-201ENST00000263741 CLTCQ00610 1675 aaKnown RBP27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms