RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 GCC2Q8IWJ2 1684 aa22.85■■□□□ 1.25
ZNF541-201ENST00000263351 HECW1Q76N89 1606 aa22.85■■□□□ 1.25
ZNF541-201ENST00000263351 TCOF1Q13428 1488 aaKnown RBP22.85■■□□□ 1.25
ZNF541-201ENST00000263351 KIF7Q2M1P5 1343 aa22.83■■□□□ 1.25
ZNF541-201ENST00000263351 SLC4A1APQ9BWU0 796 aaKnown RBP22.83■■□□□ 1.25
ZNF541-201ENST00000263351 PDS5BQ9NTI5 1447 aa22.83■■□□□ 1.25
ZNF541-201ENST00000263351 TARBP1Q13395 1621 aaKnown RBP22.81■■□□□ 1.24
ZNF541-201ENST00000263351 NCOA1Q15788 1441 aa22.8■■□□□ 1.24
ZNF541-201ENST00000263351 CDK11AQ9UQ88 783 aaPredicted RBP22.79■■□□□ 1.24
ZNF541-201ENST00000263351 ANKRD30BQ9BXX2 1392 aa22.79■■□□□ 1.24
ZNF541-201ENST00000263351 ZNF777Q9ULD5 760 aaPredicted RBP22.78■■□□□ 1.24
ZNF541-201ENST00000263351 IQGAP2Q13576 1575 aa22.78■■□□□ 1.24
ZNF541-201ENST00000263351 ABCC5O15440 1437 aa22.76■■□□□ 1.23
ZNF541-201ENST00000263351 DAPK1P53355 1430 aa22.76■■□□□ 1.23
ZNF541-201ENST00000263351 WDR62O43379 1518 aa22.75■■□□□ 1.23
ZNF541-201ENST00000263351 BCL11AQ9H165 835 aa22.75■■□□□ 1.23
ZNF541-201ENST00000263351 TEX14Q8IWB6 1497 aa22.74■■□□□ 1.23
ZNF541-201ENST00000263351 ZNF608Q9ULD9 1512 aaPredicted RBP22.74■■□□□ 1.23
ZNF541-201ENST00000263351 PBRM1Q86U86 1689 aa22.73■■□□□ 1.23
ZNF541-201ENST00000263351 RPRD2Q5VT52 1461 aaKnown RBP22.71■■□□□ 1.23
ZNF541-201ENST00000263351 AKNAQ7Z591 1439 aa22.7■■□□□ 1.22
ZNF541-201ENST00000263351 PPP4R2Q9NY27 417 aa22.7■■□□□ 1.22
ZNF541-201ENST00000263351 MIA2Q96PC5 1412 aa22.69■■□□□ 1.22
ZNF541-201ENST00000263351 PRG4Q92954 1404 aaPredicted RBP22.68■■□□□ 1.22
ZNF541-201ENST00000263351 SPATA31E1Q6ZUB1 1445 aa22.67■■□□□ 1.22
ZNF541-201ENST00000263351 ADAMTS12P58397 1594 aa22.67■■□□□ 1.22
ZNF541-201ENST00000263351 ZBED9Q6R2W3 1325 aa22.66■■□□□ 1.22
ZNF541-201ENST00000263351 NUP153P49790 1475 aaKnown RBP22.65■■□□□ 1.22
ZNF541-201ENST00000263351 PZPP20742 1482 aa22.62■■□□□ 1.21
ZNF541-201ENST00000263351 DISP1Q96F81 1524 aa22.62■■□□□ 1.21
ZNF541-201ENST00000263351 PKD2Q13563 968 aa22.61■■□□□ 1.21
ZNF541-201ENST00000263351 FANCIQ9NVI1 1328 aa22.61■■□□□ 1.21
ZNF541-201ENST00000263351 BCORL1Q5H9F3 1711 aa22.61■■□□□ 1.21
ZNF541-201ENST00000263351 CFDP1Q9UEE9 299 aaPredicted RBP22.6■■□□□ 1.21
ZNF541-201ENST00000263351 DNMT1P26358 1616 aaKnown RBP22.6■■□□□ 1.21
ZNF541-201ENST00000263351 DHX29Q7Z478 1369 aaKnown RBP22.59■■□□□ 1.21
ZNF541-201ENST00000263351 FBLN2P98095 1184 aa22.59■■□□□ 1.21
ZNF541-201ENST00000263351 KDM2AQ9Y2K7 1162 aa22.59■■□□□ 1.21
ZNF541-201ENST00000263351 ERICH6Q7L0X2 663 aa22.58■■□□□ 1.21
ZNF541-201ENST00000263351 USP47Q96K76 1375 aa22.58■■□□□ 1.2
ZNF541-201ENST00000263351 PLB1Q6P1J6 1458 aa22.56■■□□□ 1.2
ZNF541-201ENST00000263351 SALL2Q9Y467 1007 aaPredicted RBP22.56■■□□□ 1.2
ZNF541-201ENST00000263351 ROCK1Q13464 1354 aa22.56■■□□□ 1.2
ZNF541-201ENST00000263351 KIAA0556O60303 1618 aa22.54■■□□□ 1.2
ZNF541-201ENST00000263351 CAMSAP2Q08AD1 1489 aa22.53■■□□□ 1.2
ZNF541-201ENST00000263351 KIF14Q15058 1648 aa22.53■■□□□ 1.2
ZNF541-201ENST00000263351 PAK3O75914 559 aaPredicted RBP22.51■■□□□ 1.19
ZNF541-201ENST00000263351 RAPGEF6Q8TEU7 1601 aa22.49■■□□□ 1.19
ZNF541-201ENST00000263351 GPATCH8Q9UKJ3 1502 aaKnown RBP22.46■■□□□ 1.19
ZNF541-201ENST00000263351 ST20-MTHFSA0A0A6YYL1 179 aa22.45■■□□□ 1.19
ZNF541-201ENST00000263351 NBR1Q14596 966 aa22.45■■□□□ 1.19
ZNF541-201ENST00000263351 MBD5Q9P267 1494 aa22.45■■□□□ 1.18
ZNF541-201ENST00000263351 MRC2Q9UBG0 1479 aa22.45■■□□□ 1.18
ZNF541-201ENST00000263351 CARD11Q9BXL7 1154 aa22.45■■□□□ 1.18
ZNF541-201ENST00000263351 KIAA0586Q9BVV6 1533 aa22.45■■□□□ 1.18
ZNF541-201ENST00000263351 KIAA1107Q9UPP5 1409 aa22.45■■□□□ 1.18
ZNF541-201ENST00000263351 NUDCQ9Y266 331 aa22.45■■□□□ 1.18
ZNF541-201ENST00000263351 ERICH6BQ5W0A0 696 aa22.43■■□□□ 1.18
ZNF541-201ENST00000263351 TROQ12816 1431 aaPredicted RBP22.43■■□□□ 1.18
ZNF541-201ENST00000263351 PNISRQ8TF01 805 aaKnown RBP22.43■■□□□ 1.18
ZNF541-201ENST00000263351 TMC1Q8TDI8 760 aa22.42■■□□□ 1.18
ZNF541-201ENST00000263351 CCDC136Q96JN2 1154 aa22.42■■□□□ 1.18
ZNF541-201ENST00000263351 NUP155O75694 1391 aa22.42■■□□□ 1.18
ZNF541-201ENST00000263351 POLR1AO95602 1720 aaPredicted RBP22.42■■□□□ 1.18
ZNF541-201ENST00000263351 DCAF11Q8TEB1 546 aa22.41■■□□□ 1.18
ZNF541-201ENST00000263351 SMG6Q86US8 1419 aaKnown RBP22.41■■□□□ 1.18
ZNF541-201ENST00000263351 GRIN2AQ12879 1464 aa22.41■■□□□ 1.18
ZNF541-201ENST00000263351 HNRNPMP52272 730 aaKnown RBP eCLIP22.4■■□□□ 1.18
ZNF541-201ENST00000263351 CHMP7Q8WUX9 453 aaPredicted RBP22.4■■□□□ 1.18
ZNF541-201ENST00000263351 KDM5CP41229 1560 aa22.39■■□□□ 1.17
ZNF541-201ENST00000263351 ANKRD50Q9ULJ7 1429 aa22.39■■□□□ 1.17
ZNF541-201ENST00000263351 RGL3Q3MIN7 710 aa22.36■■□□□ 1.17
ZNF541-201ENST00000263351 SKAP1Q86WV1 359 aa22.36■■□□□ 1.17
ZNF541-201ENST00000263351 ANKRD30AQ9BXX3 1397 aa22.34■■□□□ 1.17
ZNF541-201ENST00000263351 EIF4G3O43432 1585 aaKnown RBP22.33■■□□□ 1.17
ZNF541-201ENST00000263351 CEP170Q5SW79 1584 aa22.32■■□□□ 1.16
ZNF541-201ENST00000263351 IFT140Q96RY7 1462 aa22.32■■□□□ 1.16
ZNF541-201ENST00000263351 NBPF1Q3BBV0 1214 aa22.31■■□□□ 1.16
ZNF541-201ENST00000263351 EXOC6Q8TAG9 804 aa22.31■■□□□ 1.16
ZNF541-201ENST00000263351 JPH4Q96JJ6 628 aa22.31■■□□□ 1.16
ZNF541-201ENST00000263351 NOP58Q9Y2X3 529 aaKnown RBP22.31■■□□□ 1.16
ZNF541-201ENST00000263351 ADGBQ8N7X0 1667 aa22.29■■□□□ 1.16
ZNF541-201ENST00000263351 RNF123Q5XPI4 1314 aa22.29■■□□□ 1.16
ZNF541-201ENST00000263351 CDCA7LQ96GN5 454 aa22.29■■□□□ 1.16
ZNF541-201ENST00000263351 NPM2Q86SE8 214 aaKnown RBP22.28■■□□□ 1.16
ZNF541-201ENST00000263351 C9orf84Q5VXU9 1444 aa22.28■■□□□ 1.16
ZNF541-201ENST00000263351 DEKP35659 375 aaKnown RBP22.27■■□□□ 1.16
ZNF541-201ENST00000263351 CROCC2H7BZ55 1655 aa22.27■■□□□ 1.16
ZNF541-201ENST00000263351 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.27■■□□□ 1.16
ZNF541-201ENST00000263351 ADGRL2O95490 1459 aa22.26■■□□□ 1.15
ZNF541-201ENST00000263351 PLEKHD1A6NEE1 506 aa22.26■■□□□ 1.15
ZNF541-201ENST00000263351 PLIN1O60240 522 aa22.25■■□□□ 1.15
ZNF541-201ENST00000263351 CC2D1BQ5T0F9 858 aaKnown RBP22.25■■□□□ 1.15
ZNF541-201ENST00000263351 RALGAPBQ86X10 1494 aa22.25■■□□□ 1.15
ZNF541-201ENST00000263351 ITSN2Q9NZM3 1697 aa22.24■■□□□ 1.15
ZNF541-201ENST00000263351 CDC42BPAQ5VT25 1732 aa22.24■■□□□ 1.15
ZNF541-201ENST00000263351 ROCK2O75116 1388 aaKnown RBP22.24■■□□□ 1.15
ZNF541-201ENST00000263351 KIF15Q9NS87 1388 aa22.23■■□□□ 1.15
ZNF541-201ENST00000263351 TSPY4P0CV99 314 aa22.22■■□□□ 1.15
ZNF541-201ENST00000263351 TSPY10P0CW01 314 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms