RNA–Protein interactions for RNA: ENST00000257262.12

TMEM258-201, Transcript of transmembrane protein 258, humanhuman

TSL 3

Gene TMEM258, Length 468 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM258-201ENST00000257262 CCDC18Q5T9S5 1454 aa13.63□□□□□ -0.23
TMEM258-201ENST00000257262 CACNB1Q02641 598 aaPredicted RBP13.63□□□□□ -0.23
TMEM258-201ENST00000257262 TTC37Q6PGP7 1564 aa13.62□□□□□ -0.23
TMEM258-201ENST00000257262 COL17A1Q9UMD9 1497 aaPredicted RBP13.61□□□□□ -0.23
TMEM258-201ENST00000257262 TROQ12816 1431 aaPredicted RBP13.6□□□□□ -0.23
TMEM258-201ENST00000257262 KIF14Q15058 1648 aa13.6□□□□□ -0.23
TMEM258-201ENST00000257262 C1QBPQ07021 282 aaKnown RBP13.58□□□□□ -0.24
TMEM258-201ENST00000257262 MYO5CQ9NQX4 1742 aa13.56□□□□□ -0.24
TMEM258-201ENST00000257262 NEO1Q92859 1461 aa13.55□□□□□ -0.24
TMEM258-201ENST00000257262 ARAP3Q8WWN8 1544 aa13.55□□□□□ -0.24
TMEM258-201ENST00000257262 PHLDB1Q86UU1 1377 aa13.55□□□□□ -0.24
TMEM258-201ENST00000257262 PLCH2O75038 1416 aa13.55□□□□□ -0.24
TMEM258-201ENST00000257262 VPS8Q8N3P4 1428 aa13.55□□□□□ -0.24
TMEM258-201ENST00000257262 ILDR1Q86SU0 546 aaPredicted RBP13.53□□□□□ -0.24
TMEM258-201ENST00000257262 FANCAO15360 1455 aa13.53□□□□□ -0.24
TMEM258-201ENST00000257262 CFAP74Q9C0B2 1584 aa13.53□□□□□ -0.24
TMEM258-201ENST00000257262 AKNAQ7Z591 1439 aa13.52□□□□□ -0.25
TMEM258-201ENST00000257262 CDC42BPBQ9Y5S2 1711 aa13.52□□□□□ -0.25
TMEM258-201ENST00000257262 RAPGEF3O95398 923 aa13.51□□□□□ -0.25
TMEM258-201ENST00000257262 MTUS2Q5JR59 1369 aa13.5□□□□□ -0.25
TMEM258-201ENST00000257262 TIAM1Q13009 1591 aa13.49□□□□□ -0.25
TMEM258-201ENST00000257262 EFCAB2Q5VUJ9 269 aa13.49□□□□□ -0.25
TMEM258-201ENST00000257262 CDC42BPAQ5VT25 1732 aa13.49□□□□□ -0.25
TMEM258-201ENST00000257262 ARHGAP5Q13017 1502 aa13.49□□□□□ -0.25
TMEM258-201ENST00000257262 PREX2Q70Z35 1606 aa13.48□□□□□ -0.25
TMEM258-201ENST00000257262 RICTORQ6R327 1708 aa13.47□□□□□ -0.25
TMEM258-201ENST00000257262 FRMPD1Q5SYB0 1578 aa13.47□□□□□ -0.25
TMEM258-201ENST00000257262 EHBP1L1Q8N3D4 1523 aa13.47□□□□□ -0.25
TMEM258-201ENST00000257262 DENND4BO75064 1496 aaPredicted RBP13.47□□□□□ -0.25
TMEM258-201ENST00000257262 ADGRL1O94910 1474 aa13.46□□□□□ -0.25
TMEM258-201ENST00000257262 SCAPERQ9BY12 1400 aa13.46□□□□□ -0.26
TMEM258-201ENST00000257262 GPATCH8Q9UKJ3 1502 aaKnown RBP13.44□□□□□ -0.26
TMEM258-201ENST00000257262 MAP3K1Q13233 1512 aa13.44□□□□□ -0.26
TMEM258-201ENST00000257262 SUPT6HQ7KZ85 1726 aaKnown RBP13.43□□□□□ -0.26
TMEM258-201ENST00000257262 CCNB3Q8WWL7 1395 aa13.43□□□□□ -0.26
TMEM258-201ENST00000257262 LRRC9Q6ZRR7 1453 aa13.42□□□□□ -0.26
TMEM258-201ENST00000257262 KANK4Q5T7N3 995 aaPredicted RBP13.42□□□□□ -0.26
TMEM258-201ENST00000257262 ZNF777Q9ULD5 760 aaPredicted RBP13.42□□□□□ -0.26
TMEM258-201ENST00000257262 APLP2Q06481 763 aa13.41□□□□□ -0.26
TMEM258-201ENST00000257262 POGZQ7Z3K3 1410 aa13.4□□□□□ -0.26
TMEM258-201ENST00000257262 CFDP1Q9UEE9 299 aaPredicted RBP13.4□□□□□ -0.26
TMEM258-201ENST00000257262 NCOA2Q15596 1464 aa13.4□□□□□ -0.26
TMEM258-201ENST00000257262 SAMD9LQ8IVG5 1584 aa13.4□□□□□ -0.26
TMEM258-201ENST00000257262 ITSN2Q9NZM3 1697 aa13.4□□□□□ -0.26
TMEM258-201ENST00000257262 ABCC1P33527 1531 aa13.39□□□□□ -0.27
TMEM258-201ENST00000257262 ARHGEF12Q9NZN5 1544 aa13.39□□□□□ -0.27
TMEM258-201ENST00000257262 AFAP1Q8N556 730 aa13.39□□□□□ -0.27
TMEM258-201ENST00000257262 ZMYM4Q5VZL5 1548 aa13.39□□□□□ -0.27
TMEM258-201ENST00000257262 KDM4FA0A1W2PPD8 638 aa13.38□□□□□ -0.27
TMEM258-201ENST00000257262 ZNF518AQ6AHZ1 1483 aa13.36□□□□□ -0.27
TMEM258-201ENST00000257262 MAGI2Q86UL8 1455 aa13.36□□□□□ -0.27
TMEM258-201ENST00000257262 ZFYVE16Q7Z3T8 1539 aa13.36□□□□□ -0.27
TMEM258-201ENST00000257262 HNRNPMP52272 730 aaKnown RBP eCLIP13.36□□□□□ -0.27
TMEM258-201ENST00000257262 U3KPZ7 1027 aaPredicted RBP13.36□□□□□ -0.27
TMEM258-201ENST00000257262 YEATS2Q9ULM3 1422 aa13.36□□□□□ -0.27
TMEM258-201ENST00000257262 TRAPPC8Q9Y2L5 1435 aa13.36□□□□□ -0.27
TMEM258-201ENST00000257262 ZNF644Q9H582 1327 aaPredicted RBP13.36□□□□□ -0.27
TMEM258-201ENST00000257262 SLC4A2P04920 1241 aa13.35□□□□□ -0.27
TMEM258-201ENST00000257262 KDM5CP41229 1560 aa13.35□□□□□ -0.27
TMEM258-201ENST00000257262 ARHGEF40Q8TER5 1519 aa13.34□□□□□ -0.27
TMEM258-201ENST00000257262 SYCP2Q9BX26 1530 aa13.34□□□□□ -0.27
TMEM258-201ENST00000257262 MYT1LQ9UL68 1186 aa13.34□□□□□ -0.27
TMEM258-201ENST00000257262 PLEKHH2Q8IVE3 1493 aa13.33□□□□□ -0.28
TMEM258-201ENST00000257262 HECW2Q9P2P5 1572 aa13.32□□□□□ -0.28
TMEM258-201ENST00000257262 KIAA1107Q9UPP5 1409 aa13.32□□□□□ -0.28
TMEM258-201ENST00000257262 SLC4A1APQ9BWU0 796 aaKnown RBP13.32□□□□□ -0.28
TMEM258-201ENST00000257262 SIGLEC1Q9BZZ2 1709 aa13.32□□□□□ -0.28
TMEM258-201ENST00000257262 MLH3Q9UHC1 1453 aa13.31□□□□□ -0.28
TMEM258-201ENST00000257262 ARID4BQ4LE39 1312 aaPredicted RBP13.31□□□□□ -0.28
TMEM258-201ENST00000257262 ATP10AO60312 1499 aa13.3□□□□□ -0.28
TMEM258-201ENST00000257262 KIDINS220Q9ULH0 1771 aa13.3□□□□□ -0.28
TMEM258-201ENST00000257262 CAMSAP2Q08AD1 1489 aa13.29□□□□□ -0.28
TMEM258-201ENST00000257262 ABCA6Q8N139 1617 aa13.29□□□□□ -0.28
TMEM258-201ENST00000257262 BCORL1Q5H9F3 1711 aa13.29□□□□□ -0.28
TMEM258-201ENST00000257262 MYOM3Q5VTT5 1437 aa13.29□□□□□ -0.28
TMEM258-201ENST00000257262 MBD5Q9P267 1494 aa13.29□□□□□ -0.28
TMEM258-201ENST00000257262 DIP2CQ9Y2E4 1556 aa13.28□□□□□ -0.28
TMEM258-201ENST00000257262 SPAG9O60271 1321 aaKnown RBP13.28□□□□□ -0.28
TMEM258-201ENST00000257262 C9orf84Q5VXU9 1444 aa13.27□□□□□ -0.29
TMEM258-201ENST00000257262 ADAMTSL3P82987 1691 aa13.27□□□□□ -0.29
TMEM258-201ENST00000257262 MIA2Q96PC5 1412 aa13.26□□□□□ -0.29
TMEM258-201ENST00000257262 INO80Q9ULG1 1556 aaPredicted RBP13.25□□□□□ -0.29
TMEM258-201ENST00000257262 ATP7AQ04656 1500 aa13.25□□□□□ -0.29
TMEM258-201ENST00000257262 RSPH4AQ5TD94 716 aa13.25□□□□□ -0.29
TMEM258-201ENST00000257262 MLECQ14165 292 aa13.24□□□□□ -0.29
TMEM258-201ENST00000257262 ARHGEF5Q12774 1597 aa13.24□□□□□ -0.29
TMEM258-201ENST00000257262 REREQ9P2R6 1566 aa13.24□□□□□ -0.29
TMEM258-201ENST00000257262 PPARGC1BQ86YN6 1023 aaKnown RBP13.23□□□□□ -0.29
TMEM258-201ENST00000257262 MADDQ8WXG6 1647 aa13.23□□□□□ -0.29
TMEM258-201ENST00000257262 PTPN23Q9H3S7 1636 aa13.23□□□□□ -0.29
TMEM258-201ENST00000257262 CCDC141Q6ZP82 1450 aa13.23□□□□□ -0.29
TMEM258-201ENST00000257262 TSPY4P0CV99 314 aa13.21□□□□□ -0.29
TMEM258-201ENST00000257262 TSPY10P0CW01 314 aa13.21□□□□□ -0.29
TMEM258-201ENST00000257262 ADGBQ8N7X0 1667 aa13.21□□□□□ -0.3
TMEM258-201ENST00000257262 RTEL1-TNFRSF6BF6WH68 1400 aa13.21□□□□□ -0.3
TMEM258-201ENST00000257262 FGD6Q6ZV73 1430 aa13.21□□□□□ -0.3
TMEM258-201ENST00000257262 RIMS1Q86UR5 1692 aaKnown RBP13.2□□□□□ -0.3
TMEM258-201ENST00000257262 AGLP35573 1532 aa13.19□□□□□ -0.3
TMEM258-201ENST00000257262 FER1L4A9Z1Z3 1794 aa13.19□□□□□ -0.3
TMEM258-201ENST00000257262 A2MP01023 1474 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms