RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 CDC42BPBQ9Y5S2 1711 aa36.65■■■■□ 3.46
LSM4-201ENST00000252816 POGZQ7Z3K3 1410 aa36.64■■■■□ 3.46
LSM4-201ENST00000252816 PREX2Q70Z35 1606 aa36.63■■■■□ 3.45
LSM4-201ENST00000252816 ZMYM4Q5VZL5 1548 aa36.62■■■■□ 3.45
LSM4-201ENST00000252816 MTUS2Q5JR59 1369 aa36.62■■■■□ 3.45
LSM4-201ENST00000252816 VPS8Q8N3P4 1428 aa36.61■■■■□ 3.45
LSM4-201ENST00000252816 CDC42BPAQ5VT25 1732 aa36.59■■■■□ 3.45
LSM4-201ENST00000252816 ARHGEF40Q8TER5 1519 aa36.59■■■■□ 3.45
LSM4-201ENST00000252816 GPATCH8Q9UKJ3 1502 aaKnown RBP36.54■■■■□ 3.44
LSM4-201ENST00000252816 YEATS2Q9ULM3 1422 aa36.53■■■■□ 3.44
LSM4-201ENST00000252816 MAGI2Q86UL8 1455 aa36.52■■■■□ 3.44
LSM4-201ENST00000252816 EHBP1L1Q8N3D4 1523 aa36.52■■■■□ 3.44
LSM4-201ENST00000252816 ZFYVE16Q7Z3T8 1539 aa36.51■■■■□ 3.44
LSM4-201ENST00000252816 AFAP1Q8N556 730 aa36.49■■■■□ 3.43
LSM4-201ENST00000252816 ABCC1P33527 1531 aa36.49■■■■□ 3.43
LSM4-201ENST00000252816 ARHGEF12Q9NZN5 1544 aa36.49■■■■□ 3.43
LSM4-201ENST00000252816 ZNF518AQ6AHZ1 1483 aa36.48■■■■□ 3.43
LSM4-201ENST00000252816 TIAM1Q13009 1591 aa36.46■■■■□ 3.43
LSM4-201ENST00000252816 CCNB3Q8WWL7 1395 aa36.46■■■■□ 3.43
LSM4-201ENST00000252816 KDM5CP41229 1560 aa36.44■■■■□ 3.42
LSM4-201ENST00000252816 ZNF777Q9ULD5 760 aaPredicted RBP36.43■■■■□ 3.42
LSM4-201ENST00000252816 TRAPPC8Q9Y2L5 1435 aa36.42■■■■□ 3.42
LSM4-201ENST00000252816 ARID4BQ4LE39 1312 aaPredicted RBP36.42■■■■□ 3.42
LSM4-201ENST00000252816 SAMD9LQ8IVG5 1584 aa36.41■■■■□ 3.42
LSM4-201ENST00000252816 CFDP1Q9UEE9 299 aaPredicted RBP36.4■■■■□ 3.42
LSM4-201ENST00000252816 ITSN2Q9NZM3 1697 aa36.39■■■■□ 3.42
LSM4-201ENST00000252816 SIGLEC1Q9BZZ2 1709 aa36.37■■■■□ 3.41
LSM4-201ENST00000252816 ADAMTSL3P82987 1691 aa36.36■■■■□ 3.41
LSM4-201ENST00000252816 BCORL1Q5H9F3 1711 aa36.35■■■■□ 3.41
LSM4-201ENST00000252816 ATP10AO60312 1499 aa36.34■■■■□ 3.41
LSM4-201ENST00000252816 NCOA2Q15596 1464 aa36.34■■■■□ 3.41
LSM4-201ENST00000252816 LRRC9Q6ZRR7 1453 aa36.33■■■■□ 3.41
LSM4-201ENST00000252816 SYCP2Q9BX26 1530 aa36.33■■■■□ 3.41
LSM4-201ENST00000252816 HECW2Q9P2P5 1572 aa36.32■■■■□ 3.41
LSM4-201ENST00000252816 MLH3Q9UHC1 1453 aa36.31■■■■□ 3.4
LSM4-201ENST00000252816 MAP3K1Q13233 1512 aa36.31■■■■□ 3.4
LSM4-201ENST00000252816 SUPT6HQ7KZ85 1726 aaKnown RBP36.31■■■■□ 3.4
LSM4-201ENST00000252816 HNRNPMP52272 730 aaKnown RBP eCLIP36.3■■■■□ 3.46e-16■□□□□ 10.9
LSM4-201ENST00000252816 C9orf84Q5VXU9 1444 aa36.29■■■■□ 3.4
LSM4-201ENST00000252816 KIAA1107Q9UPP5 1409 aa36.29■■■■□ 3.4
LSM4-201ENST00000252816 KANK4Q5T7N3 995 aaPredicted RBP36.29■■■■□ 3.4
LSM4-201ENST00000252816 MYT1LQ9UL68 1186 aa36.29■■■■□ 3.4
LSM4-201ENST00000252816 ZNF644Q9H582 1327 aaPredicted RBP36.27■■■■□ 3.4
LSM4-201ENST00000252816 PLEKHH2Q8IVE3 1493 aa36.26■■■■□ 3.4
LSM4-201ENST00000252816 DIP2CQ9Y2E4 1556 aa36.25■■■■□ 3.39
LSM4-201ENST00000252816 MADDQ8WXG6 1647 aa36.23■■■■□ 3.39
LSM4-201ENST00000252816 ABCA6Q8N139 1617 aa36.23■■■■□ 3.39
LSM4-201ENST00000252816 PTPRMP28827 1452 aa36.21■■■■□ 3.39
LSM4-201ENST00000252816 KIDINS220Q9ULH0 1771 aa36.2■■■■□ 3.39
LSM4-201ENST00000252816 MLECQ14165 292 aa36.18■■■■□ 3.38
LSM4-201ENST00000252816 SPAG9O60271 1321 aaKnown RBP36.16■■■■□ 3.38
LSM4-201ENST00000252816 MBD5Q9P267 1494 aa36.15■■■■□ 3.38
LSM4-201ENST00000252816 REREQ9P2R6 1566 aa36.15■■■■□ 3.38
LSM4-201ENST00000252816 APLP2Q06481 763 aa36.11■■■■□ 3.37
LSM4-201ENST00000252816 RIMS1Q86UR5 1692 aaKnown RBP36.1■■■■□ 3.37
LSM4-201ENST00000252816 CAMSAP2Q08AD1 1489 aa36.09■■■■□ 3.37
LSM4-201ENST00000252816 ATP7AQ04656 1500 aa36.08■■■■□ 3.37
LSM4-201ENST00000252816 INO80Q9ULG1 1556 aaPredicted RBP36.07■■■■□ 3.37
LSM4-201ENST00000252816 AGLP35573 1532 aa36.04■■■■□ 3.36
LSM4-201ENST00000252816 FER1L4A9Z1Z3 1794 aa36.02■■■■□ 3.36
LSM4-201ENST00000252816 MYOM3Q5VTT5 1437 aa36■■■■□ 3.35
LSM4-201ENST00000252816 CCDC141Q6ZP82 1450 aa35.98■■■■□ 3.35
LSM4-201ENST00000252816 RTEL1-TNFRSF6BF6WH68 1400 aa35.94■■■■□ 3.34
LSM4-201ENST00000252816 MIA2Q96PC5 1412 aa35.94■■■■□ 3.34
LSM4-201ENST00000252816 PLPPR3Q6T4P5 718 aa35.94■■■■□ 3.34
LSM4-201ENST00000252816 A2MP01023 1474 aa35.93■■■■□ 3.34
LSM4-201ENST00000252816 RSPH4AQ5TD94 716 aa35.93■■■■□ 3.34
LSM4-201ENST00000252816 ARHGEF5Q12774 1597 aa35.92■■■■□ 3.34
LSM4-201ENST00000252816 PLXNC1O60486 1568 aa35.91■■■■□ 3.34
LSM4-201ENST00000252816 ADGBQ8N7X0 1667 aa35.85■■■■□ 3.33
LSM4-201ENST00000252816 CEBPAP49715 358 aaPredicted RBP35.83■■■■□ 3.33
LSM4-201ENST00000252816 TSPY4P0CV99 314 aa35.81■■■■□ 3.32
LSM4-201ENST00000252816 TSPY10P0CW01 314 aa35.81■■■■□ 3.32
LSM4-201ENST00000252816 DHX29Q7Z478 1369 aaKnown RBP35.79■■■■□ 3.32
LSM4-201ENST00000252816 LMTK3Q96Q04 1460 aa35.78■■■■□ 3.32
LSM4-201ENST00000252816 FGD6Q6ZV73 1430 aa35.77■■■■□ 3.32
LSM4-201ENST00000252816 ESF1Q9H501 851 aaKnown RBP35.77■■■■□ 3.32
LSM4-201ENST00000252816 PTPN23Q9H3S7 1636 aa35.76■■■■□ 3.32
LSM4-201ENST00000252816 MAST1Q9Y2H9 1570 aa35.73■■■■□ 3.31
LSM4-201ENST00000252816 CNTLNQ9NXG0 1405 aa35.73■■■■□ 3.31
LSM4-201ENST00000252816 GGT6Q6P531 493 aa35.72■■■■□ 3.31
LSM4-201ENST00000252816 C3P01024 1663 aa35.7■■■■□ 3.31
LSM4-201ENST00000252816 TCOF1Q13428 1488 aaKnown RBP35.7■■■■□ 3.31
LSM4-201ENST00000252816 ABCC5O15440 1437 aa35.67■■■■□ 3.3
LSM4-201ENST00000252816 KIF3BO15066 747 aa35.65■■■■□ 3.3
LSM4-201ENST00000252816 HSPA2P54652 639 aa35.62■■■■□ 3.29
LSM4-201ENST00000252816 ZMYM3Q14202 1370 aa35.62■■■■□ 3.29
LSM4-201ENST00000252816 MROH2AA6NES4 1674 aa35.62■■■■□ 3.29
LSM4-201ENST00000252816 PPP6R1Q9UPN7 881 aa35.61■■■■□ 3.29
LSM4-201ENST00000252816 CLTCQ00610 1675 aaKnown RBP35.61■■■■□ 3.29
LSM4-201ENST00000252816 DAPK1P53355 1430 aa35.6■■■■□ 3.29
LSM4-201ENST00000252816 SHANK2Q9UPX8 1470 aa35.6■■■■□ 3.29
LSM4-201ENST00000252816 CROCC2H7BZ55 1655 aa35.59■■■■□ 3.29
LSM4-201ENST00000252816 DNMT1P26358 1616 aaKnown RBP35.58■■■■□ 3.29
LSM4-201ENST00000252816 PREX1Q8TCU6 1659 aa35.58■■■■□ 3.29
LSM4-201ENST00000252816 SETD1BQ9UPS6 1966 aaKnown RBP35.55■■■■□ 3.28
LSM4-201ENST00000252816 PPARGC1BQ86YN6 1023 aaKnown RBP35.54■■■■□ 3.28
LSM4-201ENST00000252816 UHRF1BP1Q6BDS2 1440 aa35.52■■■■□ 3.28
LSM4-201ENST00000252816 FAM50AQ14320 339 aaKnown RBP35.51■■■■□ 3.28
LSM4-201ENST00000252816 KIF15Q9NS87 1388 aa35.5■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms