RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 L3MBTL3Q96JM7 780 aaPredicted RBP13.42□□□□□ -0.26
CXCR4-201ENST00000241393 IRX5P78411 483 aaPredicted RBP13.4□□□□□ -0.26
CXCR4-201ENST00000241393 SEC24BO95487 1268 aa13.4□□□□□ -0.26
CXCR4-201ENST00000241393 TMC2Q8TDI7 906 aa13.4□□□□□ -0.26
CXCR4-201ENST00000241393 MICALL2Q8IY33 904 aa13.39□□□□□ -0.27
CXCR4-201ENST00000241393 PDCD7Q8N8D1 485 aaKnown RBP13.38□□□□□ -0.27
CXCR4-201ENST00000241393 BOLA1Q9Y3E2 137 aa13.38□□□□□ -0.27
CXCR4-201ENST00000241393 SLC39A7Q92504 469 aa13.37□□□□□ -0.27
CXCR4-201ENST00000241393 GPHNQ9NQX3 736 aaPredicted RBP13.37□□□□□ -0.27
CXCR4-201ENST00000241393 SUPT5HO00267 1087 aaKnown RBP13.35□□□□□ -0.27
CXCR4-201ENST00000241393 PRKCSHP14314 528 aaPredicted RBP13.34□□□□□ -0.27
CXCR4-201ENST00000241393 PPP1R15BQ5SWA1 713 aa13.34□□□□□ -0.27
CXCR4-201ENST00000241393 DPY19L2Q6NUT2 758 aa13.34□□□□□ -0.27
CXCR4-201ENST00000241393 C7P10643 843 aa13.33□□□□□ -0.28
CXCR4-201ENST00000241393 SMYD5Q6GMV2 418 aa13.33□□□□□ -0.28
CXCR4-201ENST00000241393 ARIH1Q9Y4X5 557 aaPredicted RBP13.33□□□□□ -0.28
CXCR4-201ENST00000241393 TMEM121BQ9BXQ6 578 aaPredicted RBP13.31□□□□□ -0.28
CXCR4-201ENST00000241393 CAMK2BQ13554 666 aa13.3□□□□□ -0.28
CXCR4-201ENST00000241393 MYO15BQ96JP2 1530 aa13.28□□□□□ -0.28
CXCR4-201ENST00000241393 FOXK1P85037 733 aa13.25□□□□□ -0.29
CXCR4-201ENST00000241393 SP7Q8TDD2 431 aaPredicted RBP13.24□□□□□ -0.29
CXCR4-201ENST00000241393 LMOD2Q6P5Q4 547 aa13.23□□□□□ -0.29
CXCR4-201ENST00000241393 DSG2Q14126 1118 aa13.21□□□□□ -0.29
CXCR4-201ENST00000241393 METRNQ9UJH8 293 aa13.21□□□□□ -0.29
CXCR4-201ENST00000241393 TESPA1A2RU30 521 aaPredicted RBP13.21□□□□□ -0.3
CXCR4-201ENST00000241393 SPDYE16A6NNV3 312 aaPredicted RBP13.21□□□□□ -0.3
CXCR4-201ENST00000241393 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.21□□□□□ -0.3
CXCR4-201ENST00000241393 C3orf67Q6ZVT6 689 aa13.2□□□□□ -0.3
CXCR4-201ENST00000241393 PELP1Q8IZL8 1130 aaKnown RBP13.2□□□□□ -0.3
CXCR4-201ENST00000241393 PLPP6Q8IY26 295 aa13.18□□□□□ -0.3
CXCR4-201ENST00000241393 C2orf72A6NCS6 295 aa13.18□□□□□ -0.3
CXCR4-201ENST00000241393 SEMA3EO15041 775 aa13.18□□□□□ -0.3
CXCR4-201ENST00000241393 COLQQ9Y215 455 aaPredicted RBP13.17□□□□□ -0.3
CXCR4-201ENST00000241393 KIF3CO14782 793 aa13.15□□□□□ -0.3
CXCR4-201ENST00000241393 ZNF316A6NFI3 1004 aaPredicted RBP13.12□□□□□ -0.31
CXCR4-201ENST00000241393 DPYSL4O14531 572 aa13.11□□□□□ -0.31
CXCR4-201ENST00000241393 MAP3K9P80192 1104 aa13.11□□□□□ -0.31
CXCR4-201ENST00000241393 PDIA6Q15084 440 aa13.09□□□□□ -0.31
CXCR4-201ENST00000241393 EMILIN3Q9NT22 766 aa13.08□□□□□ -0.31
CXCR4-201ENST00000241393 TBC1D12O60347 775 aa13.08□□□□□ -0.32
CXCR4-201ENST00000241393 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.08□□□□□ -0.32
CXCR4-201ENST00000241393 ABCC9O60706 1549 aa13.07□□□□□ -0.32
CXCR4-201ENST00000241393 POTEIP0CG38 1075 aa13.05□□□□□ -0.32
CXCR4-201ENST00000241393 POTEFA5A3E0 1075 aa13.04□□□□□ -0.32
CXCR4-201ENST00000241393 NACADO15069 1562 aa13.03□□□□□ -0.32
CXCR4-201ENST00000241393 TMEM92Q6UXU6 159 aa13□□□□□ -0.33
CXCR4-201ENST00000241393 ZC3H15Q8WU90 426 aaKnown RBP13□□□□□ -0.33
CXCR4-201ENST00000241393 OXER1Q8TDS5 423 aa12.99□□□□□ -0.33
CXCR4-201ENST00000241393 UPF1Q92900 1129 aaKnown RBP eCLIP12.99□□□□□ -0.33
CXCR4-201ENST00000241393 GPIHBP1Q8IV16 184 aa12.97□□□□□ -0.33
CXCR4-201ENST00000241393 SCRIBQ14160 1630 aa12.97□□□□□ -0.33
CXCR4-201ENST00000241393 SLC34A2O95436 690 aa12.96□□□□□ -0.34
CXCR4-201ENST00000241393 MLLT3P42568 568 aaPredicted RBP12.96□□□□□ -0.34
CXCR4-201ENST00000241393 PTCD2Q8WV60 388 aaKnown RBP12.94□□□□□ -0.34
CXCR4-201ENST00000241393 MAMSTRQ6ZN01 415 aa12.93□□□□□ -0.34
CXCR4-201ENST00000241393 PTGER2P43116 358 aa12.92□□□□□ -0.34
CXCR4-201ENST00000241393 GRXCR2A6NFK2 248 aa12.9□□□□□ -0.34
CXCR4-201ENST00000241393 EVI5O60447 810 aa12.9□□□□□ -0.34
CXCR4-201ENST00000241393 RBM26Q5T8P6 1007 aaKnown RBP12.9□□□□□ -0.34
CXCR4-201ENST00000241393 RSF1Q96T23 1441 aaPredicted RBP12.9□□□□□ -0.34
CXCR4-201ENST00000241393 ZMYND10O75800 440 aa12.89□□□□□ -0.35
CXCR4-201ENST00000241393 SCUBE2Q9NQ36 999 aa12.89□□□□□ -0.35
CXCR4-201ENST00000241393 BARGINQ6ZT62 677 aa12.86□□□□□ -0.35
CXCR4-201ENST00000241393 RIMBP2O15034 1052 aa12.86□□□□□ -0.35
CXCR4-201ENST00000241393 KRI1Q8N9T8 703 aaKnown RBP12.86□□□□□ -0.35
CXCR4-201ENST00000241393 DOK7Q18PE1 504 aa12.84□□□□□ -0.35
CXCR4-201ENST00000241393 NUTM2FA1L443 756 aa12.83□□□□□ -0.35
CXCR4-201ENST00000241393 DDX12PQ92771 950 aa12.83□□□□□ -0.36
CXCR4-201ENST00000241393 EPAS1Q99814 870 aa12.83□□□□□ -0.36
CXCR4-201ENST00000241393 ANO8Q9HCE9 1232 aaPredicted RBP12.81□□□□□ -0.36
CXCR4-201ENST00000241393 RB1CC1Q8TDY2 1594 aa12.8□□□□□ -0.36
CXCR4-201ENST00000241393 AK7Q96M32 723 aa12.8□□□□□ -0.36
CXCR4-201ENST00000241393 SLC24A3Q9HC58 644 aa12.8□□□□□ -0.36
CXCR4-201ENST00000241393 PCDHGA4Q9Y5G9 962 aa12.8□□□□□ -0.36
CXCR4-201ENST00000241393 OSBPP22059 807 aa12.79□□□□□ -0.36
CXCR4-201ENST00000241393 DAXXQ9UER7 740 aaPredicted RBP12.79□□□□□ -0.36
CXCR4-201ENST00000241393 FCHSD2O94868 740 aa12.78□□□□□ -0.36
CXCR4-201ENST00000241393 SLAIN1Q8ND83 568 aa12.78□□□□□ -0.36
CXCR4-201ENST00000241393 ZSWIM6Q9HCJ5 1215 aa12.78□□□□□ -0.36
CXCR4-201ENST00000241393 PHF14O94880 888 aa12.77□□□□□ -0.36
CXCR4-201ENST00000241393 SNPHO15079 494 aa12.75□□□□□ -0.37
CXCR4-201ENST00000241393 HIC1Q14526 733 aa12.74□□□□□ -0.37
CXCR4-201ENST00000241393 FBXW7Q969H0 707 aa12.74□□□□□ -0.37
CXCR4-201ENST00000241393 NEUROD2Q15784 382 aa12.73□□□□□ -0.37
CXCR4-201ENST00000241393 TMEM132AQ24JP5 1023 aa12.73□□□□□ -0.37
CXCR4-201ENST00000241393 ZNF710Q8N1W2 664 aa12.73□□□□□ -0.37
CXCR4-201ENST00000241393 TYW1BQ6NUM6 668 aa12.73□□□□□ -0.37
CXCR4-201ENST00000241393 MINK1Q8N4C8 1332 aaPredicted RBP12.72□□□□□ -0.37
CXCR4-201ENST00000241393 JPH4Q96JJ6 628 aa12.71□□□□□ -0.37
CXCR4-201ENST00000241393 GNPATO15228 680 aa12.7□□□□□ -0.38
CXCR4-201ENST00000241393 MAP3K7O43318 606 aa12.7□□□□□ -0.38
CXCR4-201ENST00000241393 BRPF1P55201 1214 aaPredicted RBP12.69□□□□□ -0.38
CXCR4-201ENST00000241393 EN1Q05925 392 aaPredicted RBP12.69□□□□□ -0.38
CXCR4-201ENST00000241393 MAP2K5Q13163 448 aa12.69□□□□□ -0.38
CXCR4-201ENST00000241393 GPR37O15354 613 aa12.67□□□□□ -0.38
CXCR4-201ENST00000241393 CECR2Q9BXF3 1484 aa12.67□□□□□ -0.38
CXCR4-201ENST00000241393 PSDA5PKW4 1024 aaPredicted RBP12.67□□□□□ -0.38
CXCR4-201ENST00000241393 MROH2BQ7Z745 1585 aa12.66□□□□□ -0.38
CXCR4-201ENST00000241393 CERKQ8TCT0 537 aa12.65□□□□□ -0.38
CXCR4-201ENST00000241393 POTEJP0CG39 1038 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms