RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 CENPQQ7L2Z9 268 aaPredicted RBP16.32■□□□□ 0.2
VAMP4-201ENST00000236192 KIAA1211Q6ZU35 1233 aa16.31■□□□□ 0.2
VAMP4-201ENST00000236192 ZBTB7CA1YPR0 619 aa16.31■□□□□ 0.2
VAMP4-201ENST00000236192 RAB3GAP2Q9H2M9 1393 aa16.31■□□□□ 0.2
VAMP4-201ENST00000236192 ESPNB1AK53 854 aa16.31■□□□□ 0.2
VAMP4-201ENST00000236192 CALD1Q05682 793 aaKnown RBP16.28■□□□□ 0.2
VAMP4-201ENST00000236192 PDE3BQ13370 1112 aa16.28■□□□□ 0.2
VAMP4-201ENST00000236192 PLCB2Q00722 1185 aa16.28■□□□□ 0.2
VAMP4-201ENST00000236192 BAZ1BQ9UIG0 1483 aaKnown RBP16.28■□□□□ 0.2
VAMP4-201ENST00000236192 ISY1Q9ULR0 285 aaKnown RBP16.27■□□□□ 0.2
VAMP4-201ENST00000236192 TAF7LQ5H9L4 462 aa16.27■□□□□ 0.2
VAMP4-201ENST00000236192 CCDC66A2RUB6 948 aa16.27■□□□□ 0.19
VAMP4-201ENST00000236192 CLCN1P35523 988 aa16.26■□□□□ 0.19
VAMP4-201ENST00000236192 CHMP5Q9NZZ3 219 aa16.24■□□□□ 0.19
VAMP4-201ENST00000236192 PRKRIP1Q9H875 184 aaPredicted RBP16.23■□□□□ 0.19
VAMP4-201ENST00000236192 CCDC173Q0VFZ6 552 aa16.23■□□□□ 0.19
VAMP4-201ENST00000236192 KTN1Q86UP2 1357 aaKnown RBP16.22■□□□□ 0.19
VAMP4-201ENST00000236192 TRAK2O60296 914 aa16.2■□□□□ 0.18
VAMP4-201ENST00000236192 ZHX1Q9UKY1 873 aaPredicted RBP16.2■□□□□ 0.18
VAMP4-201ENST00000236192 UQCRHLA0A096LP55 91 aa16.19■□□□□ 0.18
VAMP4-201ENST00000236192 UQCRHP07919 91 aa16.19■□□□□ 0.18
VAMP4-201ENST00000236192 FGD1P98174 961 aa16.19■□□□□ 0.18
VAMP4-201ENST00000236192 GRPEL1Q9HAV7 217 aa16.19■□□□□ 0.18
VAMP4-201ENST00000236192 SYAP1Q96A49 352 aaPredicted RBP16.18■□□□□ 0.18
VAMP4-201ENST00000236192 P3H3Q8IVL6 736 aa16.18■□□□□ 0.18
VAMP4-201ENST00000236192 GOLGA6L6A8MZA4 724 aa16.17■□□□□ 0.18
VAMP4-201ENST00000236192 NASPP49321 788 aaPredicted RBP16.17■□□□□ 0.18
VAMP4-201ENST00000236192 DDX49Q9Y6V7 483 aaKnown RBP16.16■□□□□ 0.18
VAMP4-201ENST00000236192 MAPK8IP3Q9UPT6 1336 aa16.16■□□□□ 0.18
VAMP4-201ENST00000236192 PRDM10Q9NQV6 1147 aa16.16■□□□□ 0.18
VAMP4-201ENST00000236192 POGKQ9P215 609 aa16.16■□□□□ 0.18
VAMP4-201ENST00000236192 SOGA1O94964 1423 aa16.15■□□□□ 0.18
VAMP4-201ENST00000236192 CRBNQ96SW2 442 aa16.15■□□□□ 0.18
VAMP4-201ENST00000236192 CASC1Q6TDU7 716 aa16.14■□□□□ 0.17
VAMP4-201ENST00000236192 GOLGA6L1Q8N7Z2 621 aa16.14■□□□□ 0.17
VAMP4-201ENST00000236192 CCDC39Q9UFE4 941 aa16.14■□□□□ 0.17
VAMP4-201ENST00000236192 RALBP1Q15311 655 aa16.13■□□□□ 0.17
VAMP4-201ENST00000236192 MFAP1P55081 439 aaKnown RBP16.13■□□□□ 0.17
VAMP4-201ENST00000236192 HMGN5P82970 282 aaKnown RBP16.13■□□□□ 0.17
VAMP4-201ENST00000236192 CHIC2Q9UKJ5 165 aa16.13■□□□□ 0.17
VAMP4-201ENST00000236192 NAP1L2Q9ULW6 460 aaPredicted RBP16.13■□□□□ 0.17
VAMP4-201ENST00000236192 FTSJ3Q8IY81 847 aaKnown RBP16.13■□□□□ 0.17
VAMP4-201ENST00000236192 PMFBP1Q8TBY8 1022 aa16.12■□□□□ 0.17
VAMP4-201ENST00000236192 BCL11BQ9C0K0 894 aaPredicted RBP16.12■□□□□ 0.17
VAMP4-201ENST00000236192 SMG6Q86US8 1419 aaKnown RBP16.12■□□□□ 0.17
VAMP4-201ENST00000236192 DRC7Q8IY82 874 aa16.12■□□□□ 0.17
VAMP4-201ENST00000236192 SMAP1Q8IYB5 467 aaPredicted RBP16.12■□□□□ 0.17
VAMP4-201ENST00000236192 ZSCAN30Q86W11 494 aa16.11■□□□□ 0.17
VAMP4-201ENST00000236192 AKNAQ7Z591 1439 aa16.09■□□□□ 0.17
VAMP4-201ENST00000236192 NRDCO43847 1150 aa16.09■□□□□ 0.17
VAMP4-201ENST00000236192 KANK4Q5T7N3 995 aaPredicted RBP16.09■□□□□ 0.17
VAMP4-201ENST00000236192 RWDD1Q9H446 243 aaPredicted RBP16.09■□□□□ 0.17
VAMP4-201ENST00000236192 SCRIBQ14160 1630 aa16.09■□□□□ 0.17
VAMP4-201ENST00000236192 AAMPQ13685 434 aa16.08■□□□□ 0.17
VAMP4-201ENST00000236192 PHF14O94880 888 aa16.08■□□□□ 0.16
VAMP4-201ENST00000236192 RRAGDQ9NQL2 400 aaPredicted RBP16.07■□□□□ 0.16
VAMP4-201ENST00000236192 DIAPH3Q9NSV4 1193 aa16.07■□□□□ 0.16
VAMP4-201ENST00000236192 PLIN1O60240 522 aa16.07■□□□□ 0.16
VAMP4-201ENST00000236192 CFAP44Q96MT7 982 aa16.07■□□□□ 0.16
VAMP4-201ENST00000236192 TPRNQ4KMQ1 711 aa16.07■□□□□ 0.16
VAMP4-201ENST00000236192 TSPYL1Q9H0U9 437 aa16.06■□□□□ 0.16
VAMP4-201ENST00000236192 TEX35Q5T0J7 233 aa16.06■□□□□ 0.16
VAMP4-201ENST00000236192 ABCC9O60706 1549 aa16.06■□□□□ 0.16
VAMP4-201ENST00000236192 RRP7BPQ9NSQ0 103 aa16.05■□□□□ 0.16
VAMP4-201ENST00000236192 LETM1O95202 739 aaPredicted RBP16.05■□□□□ 0.16
VAMP4-201ENST00000236192 CNTLNQ9NXG0 1405 aa16.05■□□□□ 0.16
VAMP4-201ENST00000236192 HTATSF1O43719 755 aaKnown RBP16.04■□□□□ 0.16
VAMP4-201ENST00000236192 CARD11Q9BXL7 1154 aa16.04■□□□□ 0.16
VAMP4-201ENST00000236192 NOM1Q5C9Z4 860 aaKnown RBP16.03■□□□□ 0.16
VAMP4-201ENST00000236192 MCM4P33991 863 aa16.03■□□□□ 0.16
VAMP4-201ENST00000236192 GTPBP4Q9BZE4 634 aaKnown RBP16.03■□□□□ 0.16
VAMP4-201ENST00000236192 MTUS2Q5JR59 1369 aa16.03■□□□□ 0.16
VAMP4-201ENST00000236192 DYNC1I1O14576 645 aa16.03■□□□□ 0.16
VAMP4-201ENST00000236192 CALRP27797 417 aaKnown RBP16.02■□□□□ 0.16
VAMP4-201ENST00000236192 CGNQ9P2M7 1197 aaKnown RBP16.02■□□□□ 0.16
VAMP4-201ENST00000236192 IRX3P78415 501 aaPredicted RBP16.02■□□□□ 0.15
VAMP4-201ENST00000236192 SASS6Q6UVJ0 657 aa16.02■□□□□ 0.15
VAMP4-201ENST00000236192 KDM2AQ9Y2K7 1162 aa16.01■□□□□ 0.15
VAMP4-201ENST00000236192 CBX1P83916 185 aa16.01■□□□□ 0.15
VAMP4-201ENST00000236192 PAXIP1Q6ZW49 1069 aaPredicted RBP16.01■□□□□ 0.15
VAMP4-201ENST00000236192 SETQ01105 290 aaPredicted RBP16.01■□□□□ 0.15
VAMP4-201ENST00000236192 FOXD4L1Q9NU39 408 aa16■□□□□ 0.15
VAMP4-201ENST00000236192 PHLDB1Q86UU1 1377 aa16■□□□□ 0.15
VAMP4-201ENST00000236192 MAPK8IP2Q13387 824 aaPredicted RBP16■□□□□ 0.15
VAMP4-201ENST00000236192 GPS2Q13227 327 aa15.99■□□□□ 0.15
VAMP4-201ENST00000236192 ZRSR1Q15695 479 aaKnown RBP15.98■□□□□ 0.15
VAMP4-201ENST00000236192 CC2D1BQ5T0F9 858 aaKnown RBP15.98■□□□□ 0.15
VAMP4-201ENST00000236192 KNSTRNQ9Y448 316 aa15.98■□□□□ 0.15
VAMP4-201ENST00000236192 XRCC6P12956 609 aaKnown RBP eCLIP15.98■□□□□ 0.15
VAMP4-201ENST00000236192 ROCK2O75116 1388 aaKnown RBP15.98■□□□□ 0.15
VAMP4-201ENST00000236192 CCDC88BA6NC98 1476 aa15.97■□□□□ 0.15
VAMP4-201ENST00000236192 DNAJC2Q99543 621 aaKnown RBP15.97■□□□□ 0.15
VAMP4-201ENST00000236192 CHMP4BQ9H444 224 aaKnown RBP15.97■□□□□ 0.15
VAMP4-201ENST00000236192 MYBBP1AQ9BQG0 1328 aaKnown RBP15.97■□□□□ 0.15
VAMP4-201ENST00000236192 CWC15Q9P013 229 aaKnown RBP15.97■□□□□ 0.15
VAMP4-201ENST00000236192 AEBP1Q8IUX7 1158 aa15.97■□□□□ 0.15
VAMP4-201ENST00000236192 NLRP13Q86W25 1043 aa15.96■□□□□ 0.15
VAMP4-201ENST00000236192 GOLGA2Q08379 1002 aa15.96■□□□□ 0.15
VAMP4-201ENST00000236192 KIF15Q9NS87 1388 aa15.95■□□□□ 0.14
VAMP4-201ENST00000236192 KIF16BQ96L93 1317 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 180.1 ms