RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 HSPA5P11021 654 aaKnown RBP23.9■■□□□ 1.42
CLIP2-201ENST00000223398 WASHC2CQ9Y4E1 1318 aa23.9■■□□□ 1.42
CLIP2-201ENST00000223398 SPAG9O60271 1321 aaKnown RBP23.89■■□□□ 1.42
CLIP2-201ENST00000223398 CDK11BP21127 795 aaKnown RBP23.89■■□□□ 1.42
CLIP2-201ENST00000223398 MPHOSPH9Q99550 1183 aa23.89■■□□□ 1.41
CLIP2-201ENST00000223398 CCDC9Q9Y3X0 531 aaKnown RBP23.89■■□□□ 1.41
CLIP2-201ENST00000223398 GOLGA2Q08379 1002 aa23.89■■□□□ 1.41
CLIP2-201ENST00000223398 ANKRD30AQ9BXX3 1397 aa23.88■■□□□ 1.41
CLIP2-201ENST00000223398 BECN1Q14457 450 aa23.88■■□□□ 1.41
CLIP2-201ENST00000223398 RTF1Q92541 710 aaKnown RBP23.88■■□□□ 1.41
CLIP2-201ENST00000223398 ZNF330Q9Y3S2 320 aaPredicted RBP23.88■■□□□ 1.41
CLIP2-201ENST00000223398 NUTM2FA1L443 756 aa23.87■■□□□ 1.41
CLIP2-201ENST00000223398 NCLP19338 710 aaKnown RBP23.86■■□□□ 1.41
CLIP2-201ENST00000223398 ROCK2O75116 1388 aaKnown RBP23.84■■□□□ 1.41
CLIP2-201ENST00000223398 EID1Q9Y6B2 187 aa23.84■■□□□ 1.41
CLIP2-201ENST00000223398 TOP2AP11388 1531 aaKnown RBP23.82■■□□□ 1.4
CLIP2-201ENST00000223398 EIF5BO60841 1220 aaKnown RBP23.82■■□□□ 1.4
CLIP2-201ENST00000223398 RAPGEF2Q9Y4G8 1499 aa23.8■■□□□ 1.4
CLIP2-201ENST00000223398 ATAD2BQ9ULI0 1458 aa23.79■■□□□ 1.4
CLIP2-201ENST00000223398 NAP1L2Q9ULW6 460 aaPredicted RBP23.78■■□□□ 1.4
CLIP2-201ENST00000223398 U2AF1L5P0DN76 240 aaPredicted RBP23.78■■□□□ 1.4
CLIP2-201ENST00000223398 U2AF1Q01081 240 aaKnown RBP eCLIP23.78■■□□□ 1.4
CLIP2-201ENST00000223398 KCNJ4P48050 445 aa23.77■■□□□ 1.4
CLIP2-201ENST00000223398 FGD1P98174 961 aa23.77■■□□□ 1.4
CLIP2-201ENST00000223398 OSCARQ8IYS5 282 aa23.76■■□□□ 1.39
CLIP2-201ENST00000223398 DDRGK1Q96HY6 314 aa23.76■■□□□ 1.39
CLIP2-201ENST00000223398 RAB3GAP2Q9H2M9 1393 aa23.75■■□□□ 1.39
CLIP2-201ENST00000223398 NGDNQ8NEJ9 315 aaKnown RBP23.75■■□□□ 1.39
CLIP2-201ENST00000223398 FANCD2Q9BXW9 1451 aa23.74■■□□□ 1.39
CLIP2-201ENST00000223398 CHMP4BQ9H444 224 aaKnown RBP23.74■■□□□ 1.39
CLIP2-201ENST00000223398 MS4A1P11836 297 aa23.73■■□□□ 1.39
CLIP2-201ENST00000223398 GOLGA6L22H0YM25 854 aa23.72■■□□□ 1.39
CLIP2-201ENST00000223398 APBB1O00213 710 aa23.72■■□□□ 1.39
CLIP2-201ENST00000223398 ZRSR1Q15695 479 aaKnown RBP23.72■■□□□ 1.39
CLIP2-201ENST00000223398 KTN1Q86UP2 1357 aaKnown RBP23.71■■□□□ 1.39
CLIP2-201ENST00000223398 TIMELESSQ9UNS1 1208 aa23.69■■□□□ 1.38
CLIP2-201ENST00000223398 LTV1Q96GA3 475 aaPredicted RBP23.69■■□□□ 1.38
CLIP2-201ENST00000223398 PTPRGP23470 1445 aa23.68■■□□□ 1.38
CLIP2-201ENST00000223398 TRAK1Q9UPV9 953 aa23.68■■□□□ 1.38
CLIP2-201ENST00000223398 CCDC18Q5T9S5 1454 aa23.68■■□□□ 1.38
CLIP2-201ENST00000223398 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.67■■□□□ 1.38
CLIP2-201ENST00000223398 B4GALNT3Q6L9W6 998 aa23.65■■□□□ 1.38
CLIP2-201ENST00000223398 ISY1Q9ULR0 285 aaKnown RBP23.65■■□□□ 1.38
CLIP2-201ENST00000223398 RSPH4AQ5TD94 716 aa23.64■■□□□ 1.37
CLIP2-201ENST00000223398 L3MBTL2Q969R5 705 aa23.63■■□□□ 1.37
CLIP2-201ENST00000223398 PPP4R2Q9NY27 417 aa23.62■■□□□ 1.37
CLIP2-201ENST00000223398 TERF2IPQ9NYB0 399 aa23.62■■□□□ 1.37
CLIP2-201ENST00000223398 EIF3AQ14152 1382 aaKnown RBP23.61■■□□□ 1.37
CLIP2-201ENST00000223398 AMPHP49418 695 aa23.6■■□□□ 1.37
CLIP2-201ENST00000223398 SMARCA4P51532 1647 aa23.58■■□□□ 1.37
CLIP2-201ENST00000223398 FAM69CQ0P6D2 419 aa23.57■■□□□ 1.36
CLIP2-201ENST00000223398 HSP90AB1P08238 724 aaKnown RBP23.56■■□□□ 1.36
CLIP2-201ENST00000223398 CCDC146Q8IYE0 955 aa23.54■■□□□ 1.36
CLIP2-201ENST00000223398 CHMP3Q9Y3E7 222 aa23.53■■□□□ 1.36
CLIP2-201ENST00000223398 RUSC2Q8N2Y8 1516 aa23.52■■□□□ 1.36
CLIP2-201ENST00000223398 ITPRIPQ8IWB1 547 aa23.52■■□□□ 1.36
CLIP2-201ENST00000223398 IPO8O15397 1037 aaKnown RBP23.51■■□□□ 1.35
CLIP2-201ENST00000223398 PTMAP06454 111 aaKnown RBP23.51■■□□□ 1.35
CLIP2-201ENST00000223398 TRIM44Q96DX7 344 aaPredicted RBP23.51■■□□□ 1.35
CLIP2-201ENST00000223398 PLCB2Q00722 1185 aa23.5■■□□□ 1.35
CLIP2-201ENST00000223398 CALD1Q05682 793 aaKnown RBP23.5■■□□□ 1.35
CLIP2-201ENST00000223398 STK31Q9BXU1 1019 aa23.49■■□□□ 1.35
CLIP2-201ENST00000223398 RALBP1Q15311 655 aa23.49■■□□□ 1.35
CLIP2-201ENST00000223398 AEBP2Q6ZN18 517 aaPredicted RBP23.49■■□□□ 1.35
CLIP2-201ENST00000223398 RAD54L2Q9Y4B4 1467 aa23.48■■□□□ 1.35
CLIP2-201ENST00000223398 TMX4Q9H1E5 349 aaPredicted RBP23.46■■□□□ 1.35
CLIP2-201ENST00000223398 CCER2I3L3R5 266 aa23.46■■□□□ 1.35
CLIP2-201ENST00000223398 SPRYD3Q8NCJ5 442 aa23.46■■□□□ 1.35
CLIP2-201ENST00000223398 CCDC144AA2RUR9 1427 aa23.45■■□□□ 1.34
CLIP2-201ENST00000223398 SLC4A10Q6U841 1118 aa23.44■■□□□ 1.34
CLIP2-201ENST00000223398 MINK1Q8N4C8 1332 aaPredicted RBP23.44■■□□□ 1.34
CLIP2-201ENST00000223398 GAPVD1Q14C86 1478 aa23.44■■□□□ 1.34
CLIP2-201ENST00000223398 TAF7LQ5H9L4 462 aa23.43■■□□□ 1.34
CLIP2-201ENST00000223398 ANP32EQ9BTT0 268 aa23.42■■□□□ 1.34
CLIP2-201ENST00000223398 FGD5Q6ZNL6 1462 aa23.42■■□□□ 1.34
CLIP2-201ENST00000223398 GORABQ5T7V8 394 aa23.42■■□□□ 1.34
CLIP2-201ENST00000223398 VGFO15240 615 aaPredicted RBP23.41■■□□□ 1.34
CLIP2-201ENST00000223398 ST20-MTHFSA0A0A6YYL1 179 aa23.41■■□□□ 1.34
CLIP2-201ENST00000223398 MCCP23508 829 aa23.41■■□□□ 1.34
CLIP2-201ENST00000223398 SMC4Q9NTJ3 1288 aa23.41■■□□□ 1.34
CLIP2-201ENST00000223398 AQRO60306 1485 aaKnown RBP eCLIP23.41■■□□□ 1.343e-7■■■□□ 17
CLIP2-201ENST00000223398 EVA1CP58658 441 aa23.4■■□□□ 1.34
CLIP2-201ENST00000223398 CLUAP1Q96AJ1 413 aa23.39■■□□□ 1.34
CLIP2-201ENST00000223398 RRP7AQ9Y3A4 280 aaKnown RBP23.39■■□□□ 1.34
CLIP2-201ENST00000223398 RCAN3Q9UKA8 241 aa23.39■■□□□ 1.33
CLIP2-201ENST00000223398 CLSTN1O94985 981 aa23.38■■□□□ 1.33
CLIP2-201ENST00000223398 GTF2E1P29083 439 aaPredicted RBP23.38■■□□□ 1.33
CLIP2-201ENST00000223398 GOLGA6L4A6NEF3 574 aa23.37■■□□□ 1.33
CLIP2-201ENST00000223398 HSCBQ8IWL3 235 aa23.37■■□□□ 1.33
CLIP2-201ENST00000223398 KIAA1211Q6ZU35 1233 aa23.37■■□□□ 1.33
CLIP2-201ENST00000223398 G3V3G9 751 aa23.35■■□□□ 1.33
CLIP2-201ENST00000223398 DCAF8Q5TAQ9 597 aa23.35■■□□□ 1.33
CLIP2-201ENST00000223398 PANK3Q9H999 370 aa23.35■■□□□ 1.33
CLIP2-201ENST00000223398 COG3Q96JB2 828 aa23.34■■□□□ 1.33
CLIP2-201ENST00000223398 ELL2O00472 640 aaPredicted RBP23.32■■□□□ 1.32
CLIP2-201ENST00000223398 GNL2Q13823 731 aaKnown RBP23.32■■□□□ 1.32
CLIP2-201ENST00000223398 DNTTIP2Q5QJE6 756 aaKnown RBP23.32■■□□□ 1.32
CLIP2-201ENST00000223398 ZNF644Q9H582 1327 aaPredicted RBP23.31■■□□□ 1.32
CLIP2-201ENST00000223398 MSH5O43196 834 aa23.31■■□□□ 1.32
CLIP2-201ENST00000223398 IGF1RP08069 1367 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms