RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 EID1Q9Y6B2 187 aa24.26■■□□□ 1.47
SMPD3-201ENST00000219334 CCDC9Q9Y3X0 531 aaKnown RBP24.25■■□□□ 1.47
SMPD3-201ENST00000219334 KIF3BO15066 747 aa24.24■■□□□ 1.47
SMPD3-201ENST00000219334 PPP4R2Q9NY27 417 aa24.22■■□□□ 1.47
SMPD3-201ENST00000219334 ISY1Q9ULR0 285 aaKnown RBP24.22■■□□□ 1.47
SMPD3-201ENST00000219334 ZNF330Q9Y3S2 320 aaPredicted RBP24.22■■□□□ 1.47
SMPD3-201ENST00000219334 MYO15BQ96JP2 1530 aa24.22■■□□□ 1.47
SMPD3-201ENST00000219334 HSP90AB1P08238 724 aaKnown RBP24.22■■□□□ 1.47
SMPD3-201ENST00000219334 NUP155O75694 1391 aa24.21■■□□□ 1.47
SMPD3-201ENST00000219334 CALD1Q05682 793 aaKnown RBP24.2■■□□□ 1.46
SMPD3-201ENST00000219334 ANKRD30AQ9BXX3 1397 aa24.2■■□□□ 1.46
SMPD3-201ENST00000219334 TMX4Q9H1E5 349 aaPredicted RBP24.19■■□□□ 1.46
SMPD3-201ENST00000219334 SETD5Q9C0A6 1442 aa24.19■■□□□ 1.46
SMPD3-201ENST00000219334 CHMP4AQ9BY43 222 aa24.18■■□□□ 1.46
SMPD3-201ENST00000219334 MCCP23508 829 aa24.17■■□□□ 1.46
SMPD3-201ENST00000219334 FMN1Q68DA7 1419 aa24.17■■□□□ 1.46
SMPD3-201ENST00000219334 IPO8O15397 1037 aaKnown RBP24.17■■□□□ 1.46
SMPD3-201ENST00000219334 U2AF1L5P0DN76 240 aaPredicted RBP24.17■■□□□ 1.46
SMPD3-201ENST00000219334 U2AF1Q01081 240 aaKnown RBP eCLIP24.17■■□□□ 1.46
SMPD3-201ENST00000219334 SMARCA2P51531 1590 aa24.16■■□□□ 1.46
SMPD3-201ENST00000219334 KTN1Q86UP2 1357 aaKnown RBP24.16■■□□□ 1.46
SMPD3-201ENST00000219334 GOLGA6L4A6NEF3 574 aa24.16■■□□□ 1.46
SMPD3-201ENST00000219334 PLCB2Q00722 1185 aa24.15■■□□□ 1.46
SMPD3-201ENST00000219334 FOXD1Q16676 465 aa24.15■■□□□ 1.46
SMPD3-201ENST00000219334 HSPA5P11021 654 aaKnown RBP24.14■■□□□ 1.46
SMPD3-201ENST00000219334 WASHC2CQ9Y4E1 1318 aa24.14■■□□□ 1.46
SMPD3-201ENST00000219334 DNTTIP2Q5QJE6 756 aaKnown RBP24.14■■□□□ 1.45
SMPD3-201ENST00000219334 GOLGA6L6A8MZA4 724 aa24.14■■□□□ 1.45
SMPD3-201ENST00000219334 ROCK2O75116 1388 aaKnown RBP24.13■■□□□ 1.45
SMPD3-201ENST00000219334 CFAP44Q96MT7 982 aa24.13■■□□□ 1.45
SMPD3-201ENST00000219334 SPAG9O60271 1321 aaKnown RBP24.13■■□□□ 1.45
SMPD3-201ENST00000219334 NGDNQ8NEJ9 315 aaKnown RBP24.11■■□□□ 1.45
SMPD3-201ENST00000219334 RSPH4AQ5TD94 716 aa24.11■■□□□ 1.45
SMPD3-201ENST00000219334 TERF2IPQ9NYB0 399 aa24.11■■□□□ 1.45
SMPD3-201ENST00000219334 EIF3AQ14152 1382 aaKnown RBP24.1■■□□□ 1.45
SMPD3-201ENST00000219334 MPHOSPH9Q99550 1183 aa24.1■■□□□ 1.45
SMPD3-201ENST00000219334 NRDCO43847 1150 aa24.09■■□□□ 1.45
SMPD3-201ENST00000219334 HNRNPMP52272 730 aaKnown RBP eCLIP24.08■■□□□ 1.45
SMPD3-201ENST00000219334 VPS8Q8N3P4 1428 aa24.08■■□□□ 1.45
SMPD3-201ENST00000219334 CCDC88BA6NC98 1476 aa24.07■■□□□ 1.44
SMPD3-201ENST00000219334 CLSTN1O94985 981 aa24.06■■□□□ 1.44
SMPD3-201ENST00000219334 HSCBQ8IWL3 235 aa24.06■■□□□ 1.44
SMPD3-201ENST00000219334 APBB1O00213 710 aa24.06■■□□□ 1.44
SMPD3-201ENST00000219334 STK31Q9BXU1 1019 aa24.06■■□□□ 1.44
SMPD3-201ENST00000219334 KIAA1211Q6ZU35 1233 aa24.05■■□□□ 1.44
SMPD3-201ENST00000219334 KANK4Q5T7N3 995 aaPredicted RBP24.04■■□□□ 1.44
SMPD3-201ENST00000219334 JPH4Q96JJ6 628 aa24.03■■□□□ 1.44
SMPD3-201ENST00000219334 GNL2Q13823 731 aaKnown RBP24.02■■□□□ 1.44
SMPD3-201ENST00000219334 HDAC5Q9UQL6 1122 aa24.01■■□□□ 1.43
SMPD3-201ENST00000219334 NUTM2DQ5VT03 806 aaPredicted RBP24.01■■□□□ 1.43
SMPD3-201ENST00000219334 GORABQ5T7V8 394 aa24■■□□□ 1.43
SMPD3-201ENST00000219334 RALBP1Q15311 655 aa24■■□□□ 1.43
SMPD3-201ENST00000219334 AMPHP49418 695 aa24■■□□□ 1.43
SMPD3-201ENST00000219334 B4GALNT3Q6L9W6 998 aa24■■□□□ 1.43
SMPD3-201ENST00000219334 CCER2I3L3R5 266 aa23.99■■□□□ 1.43
SMPD3-201ENST00000219334 TAF7LQ5H9L4 462 aa23.99■■□□□ 1.43
SMPD3-201ENST00000219334 CADPSQ9ULU8 1353 aa23.99■■□□□ 1.43
SMPD3-201ENST00000219334 CHMP3Q9Y3E7 222 aa23.97■■□□□ 1.43
SMPD3-201ENST00000219334 ITPRIPQ8IWB1 547 aa23.96■■□□□ 1.43
SMPD3-201ENST00000219334 G3V3G9 751 aa23.95■■□□□ 1.42
SMPD3-201ENST00000219334 DCAF8Q5TAQ9 597 aa23.95■■□□□ 1.42
SMPD3-201ENST00000219334 MROH2BQ7Z745 1585 aa23.94■■□□□ 1.42
SMPD3-201ENST00000219334 NUTM2FA1L443 756 aa23.94■■□□□ 1.42
SMPD3-201ENST00000219334 CYB5RLQ6IPT4 315 aa23.92■■□□□ 1.42
SMPD3-201ENST00000219334 LTV1Q96GA3 475 aaPredicted RBP23.92■■□□□ 1.42
SMPD3-201ENST00000219334 CCDC18Q5T9S5 1454 aa23.91■■□□□ 1.42
SMPD3-201ENST00000219334 RWDD1Q9H446 243 aaPredicted RBP23.91■■□□□ 1.42
SMPD3-201ENST00000219334 GTF2E1P29083 439 aaPredicted RBP23.91■■□□□ 1.42
SMPD3-201ENST00000219334 LMOD3Q0VAK6 560 aa23.9■■□□□ 1.42
SMPD3-201ENST00000219334 ABCC8Q09428 1581 aa23.9■■□□□ 1.42
SMPD3-201ENST00000219334 ERICH6BQ5W0A0 696 aa23.89■■□□□ 1.41
SMPD3-201ENST00000219334 GPATCH3Q96I76 525 aa23.88■■□□□ 1.41
SMPD3-201ENST00000219334 RAB3GAP2Q9H2M9 1393 aa23.88■■□□□ 1.41
SMPD3-201ENST00000219334 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.88■■□□□ 1.41
SMPD3-201ENST00000219334 RAPGEF2Q9Y4G8 1499 aa23.87■■□□□ 1.41
SMPD3-201ENST00000219334 HMMRO75330 724 aa23.87■■□□□ 1.41
SMPD3-201ENST00000219334 NCBP3Q53F19 620 aaKnown RBP23.87■■□□□ 1.41
SMPD3-201ENST00000219334 TRAK1Q9UPV9 953 aa23.86■■□□□ 1.41
SMPD3-201ENST00000219334 OSCARQ8IYS5 282 aa23.86■■□□□ 1.41
SMPD3-201ENST00000219334 SMC4Q9NTJ3 1288 aa23.85■■□□□ 1.41
SMPD3-201ENST00000219334 FHOD3Q2V2M9 1422 aa23.85■■□□□ 1.41
SMPD3-201ENST00000219334 RCAN3Q9UKA8 241 aa23.84■■□□□ 1.41
SMPD3-201ENST00000219334 NOP58Q9Y2X3 529 aaKnown RBP23.84■■□□□ 1.41
SMPD3-201ENST00000219334 SLC4A10Q6U841 1118 aa23.83■■□□□ 1.4
SMPD3-201ENST00000219334 L3MBTL2Q969R5 705 aa23.82■■□□□ 1.4
SMPD3-201ENST00000219334 VGFO15240 615 aaPredicted RBP23.8■■□□□ 1.4
SMPD3-201ENST00000219334 FRAT2O75474 233 aaPredicted RBP23.8■■□□□ 1.4
SMPD3-201ENST00000219334 SPRYD3Q8NCJ5 442 aa23.8■■□□□ 1.4
SMPD3-201ENST00000219334 PTPRGP23470 1445 aa23.8■■□□□ 1.4
SMPD3-201ENST00000219334 EVA1CP58658 441 aa23.8■■□□□ 1.4
SMPD3-201ENST00000219334 HTATSF1O43719 755 aaKnown RBP23.79■■□□□ 1.4
SMPD3-201ENST00000219334 DRC7Q8IY82 874 aa23.78■■□□□ 1.4
SMPD3-201ENST00000219334 L1TD1Q5T7N2 865 aaKnown RBP23.77■■□□□ 1.4
SMPD3-201ENST00000219334 PMFBP1Q8TBY8 1022 aa23.77■■□□□ 1.4
SMPD3-201ENST00000219334 TRIM6-TRIM34B2RNG4 842 aa23.76■■□□□ 1.39
SMPD3-201ENST00000219334 AEBP2Q6ZN18 517 aaPredicted RBP23.75■■□□□ 1.39
SMPD3-201ENST00000219334 NLRP13Q86W25 1043 aa23.75■■□□□ 1.39
SMPD3-201ENST00000219334 UACAQ9BZF9 1416 aa23.75■■□□□ 1.39
SMPD3-201ENST00000219334 CHAF1AQ13111 956 aaPredicted RBP23.74■■□□□ 1.39
SMPD3-201ENST00000219334 COG3Q96JB2 828 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms