RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SDR42E1Q8WUS8 393 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 STAMQ92783 540 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 ST7Q9NRC1 585 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 SRPRBQ9Y5M8 271 aaKnown RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 CXCL11O14625 94 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 ARL4DP49703 201 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 SKIDA1Q1XH10 827 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 ZNF697Q5TEC3 545 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 KBTBD3Q8NAB2 608 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 MROH8Q9H579 483 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 ATP6V0A4Q9HBG4 840 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 RBM8AQ9Y5S9 174 aaKnown RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 GOLGA8CPA6NN73 597 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 EIF2AK2P19525 551 aaKnown RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 TKFCQ3LXA3 575 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 KCTD1Q719H9 257 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 TMC7Q7Z402 723 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 LINC00116Q8NCU8 138 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 TSEN34Q9BSV6 310 aaKnown RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 PANK2Q9BZ23 570 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 MRPL44Q9H9J2 332 aaKnown RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 LRRC4Q9HBW1 653 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 ANKFY1Q9P2R3 1169 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 KIF2AO00139 706 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 GCNT3O95395 438 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 SRGAP2CP0DJJ0 459 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 DGKDQ16760 1214 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 SUCLG2Q96I99 432 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 CEP170P1Q96L14 293 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 AGTPBP1Q9UPW5 1226 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 V9GY48 417 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 CPSF1Q10570 1443 aaKnown RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 PRPF4BQ13523 1007 aaKnown RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 MTMR2Q13614 643 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 ZNF713Q8N859 430 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 TBC1D16Q8TBP0 767 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 SCFD2Q8WU76 684 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 UCMAQ8WVF2 138 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 FAM151AQ8WW52 585 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 RNPC3Q96LT9 517 aaKnown RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 SMC6Q96SB8 1091 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 OSBPL5Q9H0X9 879 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-218ENST00000640036 IGFLR1Q9H665 355 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 PFASO15067 1338 aa5.54□□□□□ -1.52
SCN1A-218ENST00000640036 CHL1O00533 1208 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 KIF3CO14782 793 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 CTNND1O60716 968 aaKnown RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 NDUFV1P49821 464 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 TNFAIP2Q03169 654 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 SURF1Q15526 300 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 DCAF17Q5H9S7 520 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 DHX32Q7L7V1 743 aaKnown RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 TTC25Q96NG3 672 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 DDX50Q9BQ39 737 aaKnown RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 NUP62CLQ9H1M0 184 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 RPF1Q9H9Y2 349 aaKnown RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 LSM7Q9UK45 103 aaKnown RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 APC2O95996 2303 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 FSD2A1L4K1 749 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 HOXC6P09630 235 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 KRT9P35527 623 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 ALDH1A3P47895 512 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 SNX29Q8TEQ0 813 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 BBXQ8WY36 941 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 DPF2Q92785 391 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 PPP1R12CQ9BZL4 782 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 ZSCAN16Q9H4T2 348 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 RAVER2Q9HCJ3 691 aaKnown RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 ZNF70Q9UC06 446 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 SERPINA10Q9UK55 444 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 STRIP2Q9ULQ0 834 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 HCN4Q9Y3Q4 1203 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 EXOC3O60645 756 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 PDE4AP27815 886 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 ANO1Q5XXA6 986 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 ANKRD44Q8N8A2 993 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 SLAIN1Q8ND83 568 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 CSGALNACT1Q8TDX6 532 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 RAD51Q06609 339 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 DEFB128Q7Z7B8 93 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 SCN4BQ8IWT1 228 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 GOLGA5Q8TBA6 731 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 POMGNT1Q8WZA1 660 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 E7EVH7 732 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 CIAO1O76071 339 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 ATXN8OSP0DMR3 200 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 PDE6AP16499 860 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 GRK4P32298 578 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 PAK2Q13177 524 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 DIXDC1Q155Q3 683 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 MTERF2Q49AM1 385 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 FERMT3Q86UX7 667 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 TAX1BP1Q86VP1 789 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 CCT6BQ92526 530 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 KDM5AP29375 1690 aaKnown RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 CTAGE5O15320 804 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 RPS6KA5O75582 802 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 KIF23Q02241 960 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-218ENST00000640036 DCUN1D2Q6PH85 259 aa5.53□□□□□ -1.52
SCN1A-218ENST00000640036 NOL3O60936 208 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms