RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 HOXC10Q9NYD6 342 aa20.96■□□□□ 0.95
CLN3-254ENST00000637050 LAD1O00515 517 aa20.96■□□□□ 0.95
CLN3-254ENST00000637050 CCNT1O60563 726 aaKnown RBP20.96■□□□□ 0.95
CLN3-254ENST00000637050 HOXA7P31268 230 aaPredicted RBP20.96■□□□□ 0.95
CLN3-254ENST00000637050 FMR1NBQ8N0W7 255 aaPredicted RBP20.96■□□□□ 0.95
CLN3-254ENST00000637050 CPXCR1Q8N123 301 aa20.96■□□□□ 0.95
CLN3-254ENST00000637050 SLC10A4Q96EP9 437 aa20.96■□□□□ 0.95
CLN3-254ENST00000637050 WNK4Q96J92 1243 aa20.96■□□□□ 0.95
CLN3-254ENST00000637050 HPSEQ9Y251 543 aa20.96■□□□□ 0.95
CLN3-254ENST00000637050 CTDP1Q9Y5B0 961 aaPredicted RBP20.96■□□□□ 0.95
CLN3-254ENST00000637050 PFKFB1P16118 471 aa20.95■□□□□ 0.94
CLN3-254ENST00000637050 NDUFA8P51970 172 aa20.95■□□□□ 0.94
CLN3-254ENST00000637050 OAZ1P54368 228 aa20.95■□□□□ 0.94
CLN3-254ENST00000637050 ZNF445P59923 1031 aa20.95■□□□□ 0.94
CLN3-254ENST00000637050 GSE1Q14687 1217 aa20.95■□□□□ 0.94
CLN3-254ENST00000637050 CRYGNQ8WXF5 182 aa20.95■□□□□ 0.94
CLN3-254ENST00000637050 CLEC4DQ8WXI8 215 aa20.95■□□□□ 0.94
CLN3-254ENST00000637050 SPDYE16A6NNV3 312 aaPredicted RBP20.94■□□□□ 0.94
CLN3-254ENST00000637050 GCOM1H8Y6P7 765 aaPredicted RBP20.94■□□□□ 0.94
CLN3-254ENST00000637050 ITGBL1O95965 494 aaPredicted RBP20.94■□□□□ 0.94
CLN3-254ENST00000637050 POLR2MP0CAP2 368 aa20.94■□□□□ 0.94
CLN3-254ENST00000637050 HOXA13P31271 388 aaPredicted RBP20.94■□□□□ 0.94
CLN3-254ENST00000637050 GJA5P36382 358 aa20.94■□□□□ 0.94
CLN3-254ENST00000637050 PRPHP41219 470 aa20.94■□□□□ 0.94
CLN3-254ENST00000637050 GHRHRQ02643 423 aa20.94■□□□□ 0.94
CLN3-254ENST00000637050 PPP4R3AQ6IN85 833 aa20.94■□□□□ 0.94
CLN3-254ENST00000637050 CHADLQ6NUI6 762 aa20.94■□□□□ 0.94
CLN3-254ENST00000637050 GADL1Q6ZQY3 521 aa20.94■□□□□ 0.94
CLN3-254ENST00000637050 TBC1D5Q92609 795 aa20.94■□□□□ 0.94
CLN3-254ENST00000637050 CSRNP2Q9H175 543 aa20.94■□□□□ 0.94
CLN3-254ENST00000637050 TMEM60Q9H2L4 133 aa20.94■□□□□ 0.94
CLN3-254ENST00000637050 CLSTN2Q9H4D0 955 aa20.94■□□□□ 0.94
CLN3-254ENST00000637050 SPDYE3A6NKU9 549 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 ATP2A1O14983 1001 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 CELF2O95319 508 aaKnown RBP20.93■□□□□ 0.94
CLN3-254ENST00000637050 CFBP00751 764 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 USP11P51784 963 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 MOGSQ13724 837 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 C2orf69Q8N8R5 385 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 NAP1L4Q99733 375 aaKnown RBP20.93■□□□□ 0.94
CLN3-254ENST00000637050 NUP62CLQ9H1M0 184 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 NEMFO60524 1076 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 LETM1O95202 739 aaPredicted RBP20.93■□□□□ 0.94
CLN3-254ENST00000637050 ALAS1P13196 640 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 GCFC2P16383 781 aaKnown RBP20.93■□□□□ 0.94
CLN3-254ENST00000637050 SREBF1P36956 1147 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 HSD17B4P51659 736 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 IL17AQ16552 155 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 ZNF214Q9UL59 606 aaPredicted RBP20.93■□□□□ 0.94
CLN3-254ENST00000637050 AGTPBP1Q9UPW5 1226 aa20.93■□□□□ 0.94
CLN3-254ENST00000637050 MYH7BA7E2Y1 1941 aa20.92■□□□□ 0.94
CLN3-254ENST00000637050 COL11A1P12107 1806 aaPredicted RBP20.92■□□□□ 0.94
CLN3-254ENST00000637050 SYCE3A1L190 88 aa20.92■□□□□ 0.94
CLN3-254ENST00000637050 VWA3AA6NCI4 1184 aa20.92■□□□□ 0.94
CLN3-254ENST00000637050 TDP2O95551 362 aa20.92■□□□□ 0.94
CLN3-254ENST00000637050 SPECC1Q5M775 1068 aa20.92■□□□□ 0.94
CLN3-254ENST00000637050 FASTKD5Q7L8L6 764 aaKnown RBP20.92■□□□□ 0.94
CLN3-254ENST00000637050 MCF2L2Q86YR7 1114 aa20.92■□□□□ 0.94
CLN3-254ENST00000637050 SAMD3Q8N6K7 520 aa20.92■□□□□ 0.94
CLN3-254ENST00000637050 CYP3A7-CYP3A51PA0A087WV96 503 aa20.91■□□□□ 0.94
CLN3-254ENST00000637050 NFIBO00712 420 aa20.91■□□□□ 0.94
CLN3-254ENST00000637050 KINO60870 393 aaKnown RBP20.91■□□□□ 0.94
CLN3-254ENST00000637050 OR52Z1P0C646 297 aa20.91■□□□□ 0.94
CLN3-254ENST00000637050 CYP3A7P24462 503 aa20.91■□□□□ 0.94
CLN3-254ENST00000637050 ARHGAP4P98171 946 aa20.91■□□□□ 0.94
CLN3-254ENST00000637050 SNAPC2Q13487 334 aa20.91■□□□□ 0.94
CLN3-254ENST00000637050 TMEM132BQ14DG7 1078 aa20.91■□□□□ 0.94
CLN3-254ENST00000637050 MUM1L1Q5H9M0 696 aa20.91■□□□□ 0.94
CLN3-254ENST00000637050 MOXD1Q6UVY6 613 aa20.91■□□□□ 0.94
CLN3-254ENST00000637050 FAM13BQ9NYF5 915 aa20.91■□□□□ 0.94
CLN3-254ENST00000637050 MAP3K20Q9NYL2 800 aaKnown RBP20.91■□□□□ 0.94
CLN3-254ENST00000637050 A0A0G2JMZ2 1700 aa20.91■□□□□ 0.94
CLN3-254ENST00000637050 SLC37A4O43826 429 aa20.9■□□□□ 0.94
CLN3-254ENST00000637050 ZNF202O95125 648 aa20.9■□□□□ 0.94
CLN3-254ENST00000637050 SYKP43405 635 aa20.9■□□□□ 0.94
CLN3-254ENST00000637050 CST9Q5W186 159 aa20.9■□□□□ 0.94
CLN3-254ENST00000637050 FCHSD1Q86WN1 690 aa20.9■□□□□ 0.94
CLN3-254ENST00000637050 POTEDQ86YR6 584 aa20.9■□□□□ 0.94
CLN3-254ENST00000637050 MBOAT7Q96N66 472 aa20.9■□□□□ 0.94
CLN3-254ENST00000637050 TRERF1Q96PN7 1200 aa20.9■□□□□ 0.94
CLN3-254ENST00000637050 MTMR9Q96QG7 549 aa20.9■□□□□ 0.94
CLN3-254ENST00000637050 KCNH3Q9ULD8 1083 aa20.9■□□□□ 0.94
CLN3-254ENST00000637050 CYP3A4P08684 503 aa20.89■□□□□ 0.94
CLN3-254ENST00000637050 LONP1P36776 959 aaKnown RBP20.89■□□□□ 0.94
CLN3-254ENST00000637050 CAMK4Q16566 473 aa20.89■□□□□ 0.94
CLN3-254ENST00000637050 SNRNP48Q6IEG0 339 aaKnown RBP20.89■□□□□ 0.94
CLN3-254ENST00000637050 LBX2Q6XYB7 198 aa20.89■□□□□ 0.94
CLN3-254ENST00000637050 DTHD1Q6ZMT9 781 aa20.89■□□□□ 0.94
CLN3-254ENST00000637050 RBM43Q6ZSC3 357 aaKnown RBP20.89■□□□□ 0.94
CLN3-254ENST00000637050 USP49Q70CQ1 688 aa20.89■□□□□ 0.94
CLN3-254ENST00000637050 TIGD1Q96MW7 591 aa20.89■□□□□ 0.94
CLN3-254ENST00000637050 TEX13BQ9BXU2 312 aa20.89■□□□□ 0.94
CLN3-254ENST00000637050 TNMDQ9H2S6 317 aa20.89■□□□□ 0.94
CLN3-254ENST00000637050 RIPK3Q9Y572 518 aa20.89■□□□□ 0.94
CLN3-254ENST00000637050 RBBP6Q7Z6E9 1792 aaKnown RBP20.89■□□□□ 0.94
CLN3-254ENST00000637050 TKFCQ3LXA3 575 aa20.89■□□□□ 0.93
CLN3-254ENST00000637050 GPAT2Q6NUI2 795 aa20.89■□□□□ 0.93
CLN3-254ENST00000637050 POTEEQ6S8J3 1075 aa20.89■□□□□ 0.93
CLN3-254ENST00000637050 MB21D1Q8N884 522 aa20.89■□□□□ 0.93
CLN3-254ENST00000637050 HOMER2Q9NSB8 354 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms