RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 AFG3L2Q9Y4W6 797 aa19.12■□□□□ 0.65
CLN3-252ENST00000636907 WDR90Q96KV7 1748 aa19.12■□□□□ 0.65
CLN3-252ENST00000636907 ABCB11O95342 1321 aa19.12■□□□□ 0.65
CLN3-252ENST00000636907 A0A087WWV3 80 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 C19orf81C9J6K1 198 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 PIK3CDO00329 1044 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 ICAM1P05362 532 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 HOXA13P31271 388 aaPredicted RBP19.11■□□□□ 0.65
CLN3-252ENST00000636907 PNOCQ13519 176 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 DHX58Q96C10 678 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 AGBL1Q96MI9 1066 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 MTMR9Q96QG7 549 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 SPDYE3A6NKU9 549 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 FOXN1O15353 648 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 FOSP01100 380 aaPredicted RBP19.11■□□□□ 0.65
CLN3-252ENST00000636907 CALCRLQ16602 461 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 STX1AQ16623 288 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 CRYGNQ8WXF5 182 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 TBC1D5Q92609 795 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 DNAJC25Q9H1X3 360 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 SLC38A10Q9HBR0 1119 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.11■□□□□ 0.65
CLN3-252ENST00000636907 CCPG1Q9ULG6 757 aa19.11■□□□□ 0.65
CLN3-252ENST00000636907 PARP14Q460N5 1801 aa19.1■□□□□ 0.65
CLN3-252ENST00000636907 PP2D1A8MPX8 630 aa19.1■□□□□ 0.65
CLN3-252ENST00000636907 GCFC2P16383 781 aaKnown RBP19.1■□□□□ 0.65
CLN3-252ENST00000636907 CDC25AP30304 524 aa19.1■□□□□ 0.65
CLN3-252ENST00000636907 IREB2P48200 963 aaKnown RBP19.1■□□□□ 0.65
CLN3-252ENST00000636907 USP11P51784 963 aa19.1■□□□□ 0.65
CLN3-252ENST00000636907 MDM2Q00987 491 aaPredicted RBP19.1■□□□□ 0.65
CLN3-252ENST00000636907 TEX2Q8IWB9 1127 aa19.1■□□□□ 0.65
CLN3-252ENST00000636907 FAM200AQ8TCP9 573 aa19.1■□□□□ 0.65
CLN3-252ENST00000636907 DDX25Q9UHL0 483 aaKnown RBP19.1■□□□□ 0.65
CLN3-252ENST00000636907 CSADQ9Y600 493 aa19.1■□□□□ 0.65
CLN3-252ENST00000636907 GCOM1H8Y6P7 765 aaPredicted RBP19.09■□□□□ 0.65
CLN3-252ENST00000636907 CFBP00751 764 aa19.09■□□□□ 0.65
CLN3-252ENST00000636907 POLR2MP0CAP2 368 aa19.09■□□□□ 0.65
CLN3-252ENST00000636907 NF2P35240 595 aa19.09■□□□□ 0.65
CLN3-252ENST00000636907 NAP1L4Q99733 375 aaKnown RBP19.09■□□□□ 0.65
CLN3-252ENST00000636907 ANO10Q9NW15 660 aa19.09■□□□□ 0.65
CLN3-252ENST00000636907 TUBE1Q9UJT0 475 aa19.09■□□□□ 0.65
CLN3-252ENST00000636907 SREBF1P36956 1147 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 TXKP42681 527 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 ARHGAP4P98171 946 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 POSTNQ15063 836 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 E2F4Q16254 413 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 UVSSAQ2YD98 709 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 KANK3Q6NY19 840 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 C11orf57Q6ZUT1 292 aaPredicted RBP19.08■□□□□ 0.65
CLN3-252ENST00000636907 PNMA8AQ86V59 439 aaPredicted RBP19.08■□□□□ 0.65
CLN3-252ENST00000636907 GRAMD1CQ8IYS0 662 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 CPXCR1Q8N123 301 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 CNKSR2Q8WXI2 1034 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 ATG4CQ96DT6 458 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 RAVER2Q9HCJ3 691 aaKnown RBP19.08■□□□□ 0.65
CLN3-252ENST00000636907 TMOD4Q9NZQ9 345 aa19.08■□□□□ 0.65
CLN3-252ENST00000636907 HOOK1Q9UJC3 728 aaKnown RBP19.08■□□□□ 0.65
CLN3-252ENST00000636907 CYP3A7-CYP3A51PA0A087WV96 503 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 SLFN14P0C7P3 912 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 PRR29P0C7W0 189 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 CYP3A7P24462 503 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 TXLNAP40222 546 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 TECP42680 631 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 SH3D19Q5HYK7 790 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 MOB2Q70IA6 237 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 FCHSD1Q86WN1 690 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 AK8Q96MA6 479 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 MBOAT7Q96N66 472 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 CBX8Q9HC52 389 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 USP25Q9UHP3 1055 aa19.08■□□□□ 0.64
CLN3-252ENST00000636907 RLFQ13129 1914 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 BIN1O00499 593 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 VWA5AO00534 786 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 ZBED4O75132 1171 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 KARSQ15046 597 aaKnown RBP19.07■□□□□ 0.64
CLN3-252ENST00000636907 MOXD1Q6UVY6 613 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 SH3RF1Q7Z6J0 888 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 CEP57L1Q8IYX8 460 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 IGSF22Q8N9C0 903 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 IQUBQ8NA54 791 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 WNK4Q96J92 1243 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 PYM1Q9BRP8 204 aaKnown RBP19.07■□□□□ 0.64
CLN3-252ENST00000636907 CCSER1Q9C0I3 900 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 ELP3Q9H9T3 547 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 CTDP1Q9Y5B0 961 aaPredicted RBP19.07■□□□□ 0.64
CLN3-252ENST00000636907 PCDHA5Q9Y5H7 936 aa19.07■□□□□ 0.64
CLN3-252ENST00000636907 CAVIN2O95810 425 aa19.06■□□□□ 0.64
CLN3-252ENST00000636907 FDX1P10109 184 aa19.06■□□□□ 0.64
CLN3-252ENST00000636907 DSG3P32926 999 aa19.06■□□□□ 0.64
CLN3-252ENST00000636907 UBA7P41226 1012 aa19.06■□□□□ 0.64
CLN3-252ENST00000636907 ZNF165P49910 485 aa19.06■□□□□ 0.64
CLN3-252ENST00000636907 FXR2P51116 673 aaKnown RBP eCLIP19.06■□□□□ 0.64
CLN3-252ENST00000636907 NLRP12P59046 1061 aa19.06■□□□□ 0.64
CLN3-252ENST00000636907 TTLL12Q14166 644 aaPredicted RBP19.06■□□□□ 0.64
CLN3-252ENST00000636907 ZRSR1Q15695 479 aaKnown RBP19.06■□□□□ 0.64
CLN3-252ENST00000636907 CATSPERGQ6ZRH7 1159 aa19.06■□□□□ 0.64
CLN3-252ENST00000636907 RBM46Q8TBY0 533 aaKnown RBP19.06■□□□□ 0.64
CLN3-252ENST00000636907 CLEC4DQ8WXI8 215 aa19.06■□□□□ 0.64
CLN3-252ENST00000636907 HAS1Q92839 578 aa19.06■□□□□ 0.64
CLN3-252ENST00000636907 PAGE5Q96GU1 130 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms