RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 B4GALNT3Q6L9W6 998 aa21.63■■□□□ 1.05
CLN3-241ENST00000635861 PSRC1Q6PGN9 363 aaPredicted RBP21.63■■□□□ 1.05
CLN3-241ENST00000635861 CXCL17Q6UXB2 119 aa21.63■■□□□ 1.05
CLN3-241ENST00000635861 KIAA1211Q6ZU35 1233 aa21.63■■□□□ 1.05
CLN3-241ENST00000635861 IQCA1Q86XH1 822 aa21.63■■□□□ 1.05
CLN3-241ENST00000635861 TBC1D10CQ8IV04 446 aa21.63■■□□□ 1.05
CLN3-241ENST00000635861 DNERQ8NFT8 737 aa21.63■■□□□ 1.05
CLN3-241ENST00000635861 DIAPH3Q9NSV4 1193 aa21.63■■□□□ 1.05
CLN3-241ENST00000635861 PRUNE2Q8WUY3 3088 aa21.62■■□□□ 1.05
CLN3-241ENST00000635861 MYO9BQ13459 2157 aa21.62■■□□□ 1.05
CLN3-241ENST00000635861 GBF1Q92538 1859 aa21.62■■□□□ 1.05
CLN3-241ENST00000635861 RBM47A0AV96 593 aaKnown RBP21.62■■□□□ 1.05
CLN3-241ENST00000635861 PTPDC1A2A3K4 754 aa21.62■■□□□ 1.05
CLN3-241ENST00000635861 B4DLN1 442 aa21.62■■□□□ 1.05
CLN3-241ENST00000635861 NFIBO00712 420 aa21.62■■□□□ 1.05
CLN3-241ENST00000635861 MRPL12P52815 198 aaKnown RBP21.62■■□□□ 1.05
CLN3-241ENST00000635861 RNF207Q6ZRF8 634 aa21.62■■□□□ 1.05
CLN3-241ENST00000635861 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.62■■□□□ 1.053e-6■□□□□ 10.1
CLN3-241ENST00000635861 TTYH1Q9H313 450 aaPredicted RBP21.62■■□□□ 1.05
CLN3-241ENST00000635861 PDGFCQ9NRA1 345 aa21.62■■□□□ 1.05
CLN3-241ENST00000635861 EEPD1Q7L9B9 569 aa21.61■■□□□ 1.05
CLN3-241ENST00000635861 RGS22Q8NE09 1264 aa21.61■■□□□ 1.05
CLN3-241ENST00000635861 CLEC4DQ8WXI8 215 aa21.61■■□□□ 1.05
CLN3-241ENST00000635861 DSCC1Q9BVC3 393 aa21.61■■□□□ 1.05
CLN3-241ENST00000635861 POLR3EQ9NVU0 708 aa21.61■■□□□ 1.05
CLN3-241ENST00000635861 NEDD4P46934 1319 aa21.6■■□□□ 1.05
CLN3-241ENST00000635861 NKRFO15226 690 aaKnown RBP eCLIP21.6■■□□□ 1.05
CLN3-241ENST00000635861 CPT1AP50416 773 aa21.6■■□□□ 1.05
CLN3-241ENST00000635861 TMEM240Q5SV17 173 aa21.6■■□□□ 1.05
CLN3-241ENST00000635861 RASIP1Q5U651 963 aa21.6■■□□□ 1.05
CLN3-241ENST00000635861 CWC27Q6UX04 472 aaKnown RBP21.6■■□□□ 1.05
CLN3-241ENST00000635861 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.6■■□□□ 1.05
CLN3-241ENST00000635861 ANKS1AQ92625 1134 aa21.6■■□□□ 1.05
CLN3-241ENST00000635861 IGHDP01880 384 aa21.59■■□□□ 1.05
CLN3-241ENST00000635861 RPS6P62753 249 aaKnown RBP21.59■■□□□ 1.05
CLN3-241ENST00000635861 BRDTQ58F21 947 aaPredicted RBP21.59■■□□□ 1.05
CLN3-241ENST00000635861 WDR11Q9BZH6 1224 aa21.59■■□□□ 1.05
CLN3-241ENST00000635861 MTIF3Q9H2K0 278 aaKnown RBP21.59■■□□□ 1.05
CLN3-241ENST00000635861 IL23AQ9NPF7 189 aa21.59■■□□□ 1.05
CLN3-241ENST00000635861 CTNNA3Q9UI47 895 aa21.59■■□□□ 1.05
CLN3-241ENST00000635861 RAD50Q92878 1312 aa21.58■■□□□ 1.05
CLN3-241ENST00000635861 CSF2RAP15509 400 aa21.58■■□□□ 1.05
CLN3-241ENST00000635861 EDNRBP24530 442 aa21.58■■□□□ 1.05
CLN3-241ENST00000635861 DNAJB2P25686 324 aa21.58■■□□□ 1.05
CLN3-241ENST00000635861 IMMTQ16891 758 aaKnown RBP21.58■■□□□ 1.05
CLN3-241ENST00000635861 SLC30A10Q6XR72 485 aa21.58■■□□□ 1.05
CLN3-241ENST00000635861 PNMA1Q8ND90 353 aa21.58■■□□□ 1.05
CLN3-241ENST00000635861 PURBQ96QR8 312 aaKnown RBP21.58■■□□□ 1.05
CLN3-241ENST00000635861 PPP1R12CQ9BZL4 782 aa21.58■■□□□ 1.05
CLN3-241ENST00000635861 HIPK3Q9H422 1215 aa21.58■■□□□ 1.05
CLN3-241ENST00000635861 CHD9Q3L8U1 2897 aa21.58■■□□□ 1.04
CLN3-241ENST00000635861 GRIN2DO15399 1336 aa21.58■■□□□ 1.04
CLN3-241ENST00000635861 CALML3P27482 149 aa21.57■■□□□ 1.04
CLN3-241ENST00000635861 PDE4DQ08499 809 aa21.57■■□□□ 1.04
CLN3-241ENST00000635861 ASPRV1Q53RT3 343 aa21.57■■□□□ 1.04
CLN3-241ENST00000635861 C16orf59Q7L2K0 433 aa21.57■■□□□ 1.04
CLN3-241ENST00000635861 MAFAQ8NHW3 353 aaPredicted RBP21.57■■□□□ 1.04
CLN3-241ENST00000635861 SCFD2Q8WU76 684 aa21.57■■□□□ 1.04
CLN3-241ENST00000635861 KRT23Q9C075 422 aa21.57■■□□□ 1.04
CLN3-241ENST00000635861 KAT14Q9H8E8 782 aa21.57■■□□□ 1.04
CLN3-241ENST00000635861 CNNM2Q9H8M5 875 aa21.57■■□□□ 1.04
CLN3-241ENST00000635861 DDX49Q9Y6V7 483 aaKnown RBP21.57■■□□□ 1.04
CLN3-241ENST00000635861 KDM4AO75164 1064 aa21.56■■□□□ 1.04
CLN3-241ENST00000635861 MYLIPQ8WY64 445 aa21.56■■□□□ 1.04
CLN3-241ENST00000635861 ZSCAN10Q96SZ4 725 aaPredicted RBP21.56■■□□□ 1.04
CLN3-241ENST00000635861 ABCB11O95342 1321 aa21.56■■□□□ 1.04
CLN3-241ENST00000635861 TANC1Q9C0D5 1861 aa21.56■■□□□ 1.04
CLN3-241ENST00000635861 KPNA6O60684 536 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 SUPT20HL2P0C7V6 817 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 FOSL2P15408 326 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 CYP2C18P33260 490 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 PPP2R5BQ15173 497 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 EXOC6Q8TAG9 804 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 HERVK_113Q902F9 699 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 ZKSCAN3Q9BRR0 538 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 MYH7BA7E2Y1 1941 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 B4GALT4O60513 344 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 PURAQ00577 322 aaKnown RBP21.55■■□□□ 1.04
CLN3-241ENST00000635861 ZNF365Q70YC5 407 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 RPUSD2Q8IZ73 545 aaKnown RBP21.55■■□□□ 1.04
CLN3-241ENST00000635861 OR6J1Q8NGC5 347 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 TIFAQ96CG3 184 aa21.55■■□□□ 1.04
CLN3-241ENST00000635861 NOC4LQ9BVI4 516 aaKnown RBP21.55■■□□□ 1.04
CLN3-241ENST00000635861 GPHNQ9NQX3 736 aaPredicted RBP21.55■■□□□ 1.04
CLN3-241ENST00000635861 B4E1Z4 1266 aa21.54■■□□□ 1.04
CLN3-241ENST00000635861 GOLGA8HP0CJ92 632 aa21.54■■□□□ 1.04
CLN3-241ENST00000635861 CDC37Q16543 378 aaPredicted RBP21.54■■□□□ 1.04
CLN3-241ENST00000635861 TMEM63BQ5T3F8 832 aa21.54■■□□□ 1.04
CLN3-241ENST00000635861 MCF2L2Q86YR7 1114 aa21.54■■□□□ 1.04
CLN3-241ENST00000635861 ENAHQ8N8S7 591 aaPredicted RBP21.54■■□□□ 1.04
CLN3-241ENST00000635861 MTG1Q9BT17 334 aaPredicted RBP21.54■■□□□ 1.04
CLN3-241ENST00000635861 ALDH8A1Q9H2A2 487 aaPredicted RBP21.54■■□□□ 1.04
CLN3-241ENST00000635861 ZNF576Q9H609 170 aa21.54■■□□□ 1.04
CLN3-241ENST00000635861 ZSWIM5Q9P217 1185 aa21.54■■□□□ 1.04
CLN3-241ENST00000635861 TNKSO95271 1327 aa21.53■■□□□ 1.04
CLN3-241ENST00000635861 TRIP12Q14669 1992 aaPredicted RBP21.53■■□□□ 1.04
CLN3-241ENST00000635861 A6NJR5 290 aa21.53■■□□□ 1.04
CLN3-241ENST00000635861 FGBP02675 491 aa21.53■■□□□ 1.04
CLN3-241ENST00000635861 PFKMP08237 780 aa21.53■■□□□ 1.04
CLN3-241ENST00000635861 PSMC6P62333 389 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms