RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 PPFIA3O75145 1194 aa22.02■■□□□ 1.12
SQSTM1-216ENST00000626660 CFBP00751 764 aa22.02■■□□□ 1.12
SQSTM1-216ENST00000626660 CALML3P27482 149 aa22.02■■□□□ 1.12
SQSTM1-216ENST00000626660 NAPAP54920 295 aa22.02■■□□□ 1.12
SQSTM1-216ENST00000626660 ZNF792Q3KQV3 632 aa22.02■■□□□ 1.12
SQSTM1-216ENST00000626660 WWC2Q6AWC2 1192 aa22.02■■□□□ 1.12
SQSTM1-216ENST00000626660 PPP1R18Q6NYC8 613 aa22.02■■□□□ 1.12
SQSTM1-216ENST00000626660 NPLOC4Q8TAT6 608 aa22.02■■□□□ 1.12
SQSTM1-216ENST00000626660 DEXIO95424 95 aa22.01■■□□□ 1.11
SQSTM1-216ENST00000626660 ELNP15502 786 aa22.01■■□□□ 1.11
SQSTM1-216ENST00000626660 RPS6P62753 249 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-216ENST00000626660 SLC30A10Q6XR72 485 aa22.01■■□□□ 1.11
SQSTM1-216ENST00000626660 CCDC83Q8IWF9 413 aa22.01■■□□□ 1.11
SQSTM1-216ENST00000626660 CCDC12Q8WUD4 166 aaPredicted RBP22.01■■□□□ 1.11
SQSTM1-216ENST00000626660 MAML3Q96JK9 1138 aa22.01■■□□□ 1.11
SQSTM1-216ENST00000626660 BARHL2Q9NY43 387 aa22.01■■□□□ 1.11
SQSTM1-216ENST00000626660 MAP3K20Q9NYL2 800 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-216ENST00000626660 ADD3Q9UEY8 706 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-216ENST00000626660 STK36Q9NRP7 1315 aa22.01■■□□□ 1.11
SQSTM1-216ENST00000626660 GCOM1H8Y6P7 765 aaPredicted RBP22■■□□□ 1.11
SQSTM1-216ENST00000626660 HMGCRP04035 888 aa22■■□□□ 1.11
SQSTM1-216ENST00000626660 POLR2MP0CAP2 368 aa22■■□□□ 1.11
SQSTM1-216ENST00000626660 SOX10P56693 466 aa22■■□□□ 1.11
SQSTM1-216ENST00000626660 CNTN2Q02246 1040 aa22■■□□□ 1.11
SQSTM1-216ENST00000626660 PKN1Q16512 942 aa22■■□□□ 1.11
SQSTM1-216ENST00000626660 CCL14Q16627 93 aa22■■□□□ 1.11
SQSTM1-216ENST00000626660 MFSD14CQ5VZR4 134 aa22■■□□□ 1.11
SQSTM1-216ENST00000626660 OLFML2BQ68BL8 750 aa22■■□□□ 1.11
SQSTM1-216ENST00000626660 FAM133AQ8N9E0 248 aa22■■□□□ 1.11
SQSTM1-216ENST00000626660 CUL5Q93034 780 aa22■■□□□ 1.11
SQSTM1-216ENST00000626660 STXBP3O00186 592 aa21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 OPLAHO14841 1288 aa21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 CD2BP2O95400 341 aaKnown RBP21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 GHRHRQ02643 423 aa21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 ZNF467Q7Z7K2 595 aaPredicted RBP21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 SH3TC2Q8TF17 1288 aa21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 TRIB2Q92519 343 aa21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 WASF1Q92558 559 aa21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 TBC1D5Q92609 795 aa21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 LLPHQ9BRT6 129 aaKnown RBP21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 PSTPIP2Q9H939 334 aa21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 LCTP09848 1927 aa21.99■■□□□ 1.11
SQSTM1-216ENST00000626660 CTDNEP1O95476 244 aa21.98■■□□□ 1.11
SQSTM1-216ENST00000626660 HSD17B4P51659 736 aa21.98■■□□□ 1.11
SQSTM1-216ENST00000626660 UBXN2AP68543 259 aa21.98■■□□□ 1.11
SQSTM1-216ENST00000626660 MSL3Q8N5Y2 521 aaKnown RBP21.98■■□□□ 1.11
SQSTM1-216ENST00000626660 NSUN7Q8NE18 718 aaKnown RBP21.98■■□□□ 1.11
SQSTM1-216ENST00000626660 CCDC148Q8NFR7 591 aa21.98■■□□□ 1.11
SQSTM1-216ENST00000626660 SYTL5Q8TDW5 730 aaPredicted RBP21.98■■□□□ 1.11
SQSTM1-216ENST00000626660 TMX3Q96JJ7 454 aa21.98■■□□□ 1.11
SQSTM1-216ENST00000626660 MPHOSPH6Q99547 160 aaKnown RBP21.98■■□□□ 1.11
SQSTM1-216ENST00000626660 GLT8D2Q9H1C3 349 aa21.98■■□□□ 1.11
SQSTM1-216ENST00000626660 ORC3Q9UBD5 711 aaPredicted RBP21.98■■□□□ 1.11
SQSTM1-216ENST00000626660 ASB14A6NK59 587 aa21.97■■□□□ 1.11
SQSTM1-216ENST00000626660 B4DLN1 442 aa21.97■■□□□ 1.11
SQSTM1-216ENST00000626660 HOXA13P31271 388 aaPredicted RBP21.97■■□□□ 1.11
SQSTM1-216ENST00000626660 ADCY7P51828 1080 aa21.97■■□□□ 1.11
SQSTM1-216ENST00000626660 MRPL12P52815 198 aaKnown RBP21.97■■□□□ 1.11
SQSTM1-216ENST00000626660 TEX2Q8IWB9 1127 aa21.97■■□□□ 1.11
SQSTM1-216ENST00000626660 DNERQ8NFT8 737 aa21.97■■□□□ 1.11
SQSTM1-216ENST00000626660 SMARCC2Q8TAQ2 1214 aa21.97■■□□□ 1.11
SQSTM1-216ENST00000626660 SH3GLB2Q9NR46 395 aa21.97■■□□□ 1.11
SQSTM1-216ENST00000626660 FLRT1Q9NZU1 646 aa21.97■■□□□ 1.11
SQSTM1-216ENST00000626660 MCM3APO60318 1980 aa21.97■■□□□ 1.11
SQSTM1-216ENST00000626660 LOC102724159A0A0B4J2E5 919 aa21.96■■□□□ 1.11
SQSTM1-216ENST00000626660 SOWAHBA6NEL2 793 aa21.96■■□□□ 1.11
SQSTM1-216ENST00000626660 SMCO2A6NFE2 343 aa21.96■■□□□ 1.11
SQSTM1-216ENST00000626660 INHAP05111 366 aa21.96■■□□□ 1.11
SQSTM1-216ENST00000626660 XBP1P17861 261 aa21.96■■□□□ 1.11
SQSTM1-216ENST00000626660 ST3GAL1Q11201 340 aa21.96■■□□□ 1.11
SQSTM1-216ENST00000626660 PWP2Q15269 919 aaKnown RBP21.96■■□□□ 1.11
SQSTM1-216ENST00000626660 TINF2Q9BSI4 451 aa21.96■■□□□ 1.11
SQSTM1-216ENST00000626660 ESYT2A0FGR8 921 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 PIK3CDO00329 1044 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 JAK2O60674 1132 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 CYP2C19P33261 490 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 ALDH5A1P51649 535 aaPredicted RBP21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 TYW1BQ6NUM6 668 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 MAMDC4Q6UXC1 1216 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 FCHSD1Q86WN1 690 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 FAM177A1Q8N128 213 aaPredicted RBP21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 NSUN6Q8TEA1 469 aaKnown RBP21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 ARMC5Q96C12 935 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 FGD4Q96M96 766 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 RMDN3Q96TC7 470 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 C6orf50Q9HD87 102 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 RIC8AQ9NPQ8 531 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 VPS54Q9P1Q0 977 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 SYNGAP1Q96PV0 1343 aa21.95■■□□□ 1.1
SQSTM1-216ENST00000626660 GNA11P29992 359 aa21.94■■□□□ 1.1
SQSTM1-216ENST00000626660 HMGN5P82970 282 aaKnown RBP21.94■■□□□ 1.1
SQSTM1-216ENST00000626660 ARHGEF16Q5VV41 709 aa21.94■■□□□ 1.1
SQSTM1-216ENST00000626660 USP17L6PQ6QN14 398 aa21.94■■□□□ 1.1
SQSTM1-216ENST00000626660 PURBQ96QR8 312 aaKnown RBP21.94■■□□□ 1.1
SQSTM1-216ENST00000626660 TAAR1Q96RJ0 339 aa21.94■■□□□ 1.1
SQSTM1-216ENST00000626660 ALG1Q9BT22 464 aa21.94■■□□□ 1.1
SQSTM1-216ENST00000626660 COL20A1Q9P218 1284 aa21.94■■□□□ 1.1
SQSTM1-216ENST00000626660 CNPY2Q9Y2B0 182 aa21.94■■□□□ 1.1
SQSTM1-216ENST00000626660 MEIS2O14770 477 aa21.93■■□□□ 1.1
SQSTM1-216ENST00000626660 PRKAR2AP13861 404 aaKnown RBP21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms