RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 PSMB7Q99436 277 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 TANGO6Q9C0B7 1094 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 LACRTQ9GZZ8 138 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 MMRN2Q9H8L6 949 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 JADE2Q9NQC1 790 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 TBC1D7Q9P0N9 293 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 POLLQ9UGP5 575 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 CAPN11Q9UMQ6 739 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 RCCD1A6NED2 376 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 H3BQF6 201 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 N4BP1O75113 896 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 SCNN1DP51172 638 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 SV2BQ7L1I2 683 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 DAGLBQ8NCG7 672 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 NEDD1Q8NHV4 660 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 CCDC102AQ96A19 550 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 JAKMIP2Q96AA8 810 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 DHTKD1Q96HY7 919 aaPredicted RBP14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 NUDT12Q9BQG2 462 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 LZTS2Q9BRK4 669 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 USP21Q9UK80 565 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 ZNF185O15231 689 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 CCNE1P24864 410 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 AMPD3Q01432 767 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 KIAA0895Q8NCT3 520 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 MMTAG2Q9BU76 263 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 SPZ1Q9BXG8 430 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 VPS18Q9P253 973 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 BICDL2A1A5D9 508 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 LAD1O00515 517 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 MRPS25P82663 173 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 BRD3Q15059 726 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 CCDC96Q2M329 555 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 TTBK2Q6IQ55 1244 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 GLIS3Q8NEA6 775 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 GPR75-ASB3A0A0A6YYF3 556 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 ERLIN1O75477 346 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 SRGNP10124 158 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 AKR1B1P15121 316 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 PRPHP41219 470 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 FKBP15Q5T1M5 1219 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 CCDC155Q8N6L0 562 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 MMS19Q96T76 1030 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 DNAJC7Q99615 494 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 SEMA6BQ9H3T3 888 aa14.43□□□□□ -0.1
CCDC88A-214ENST00000621814 MYMKA6NI61 221 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 RASSF10A6NK89 507 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 SERPINB2P05120 415 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 PDHBP11177 359 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 TNNT3P45378 269 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 LMAN1P49257 510 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 BEND6Q5SZJ8 279 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 TMED8Q6PL24 325 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 KCTD1Q719H9 257 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 C2CD5Q86YS7 1000 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 SNX29Q8TEQ0 813 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 CCDC42Q96M95 316 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 DEF6Q9H4E7 631 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 HAUS4Q9H6D7 363 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 LRRC4BQ9NT99 713 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 MATR3P43243 847 aaKnown RBP eCLIP14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 RHBDL3P58872 404 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 CACNB1Q02641 598 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 VPS72Q15906 364 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 ENOX2Q16206 610 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 WHAMMP3Q1A5X7 153 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 CNNM4Q6P4Q7 775 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 ANKRD13CQ8N6S4 541 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 ZFP91Q96JP5 570 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 AK8Q96MA6 479 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 KANSL2Q9H9L4 492 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 SAR1BQ9Y6B6 198 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 LAMB2P55268 1798 aa14.42□□□□□ -0.1
CCDC88A-214ENST00000621814 A0A1W2PQC6 194 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 KRT86O43790 486 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 FECHP22830 423 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 CYP2C19P33261 490 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 CYLC1P35663 651 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 ADCY7P51828 1080 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 KRT83P78385 493 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 DOK7Q18PE1 504 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 HDXQ7Z353 690 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 ZHX3Q9H4I2 956 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 CCDC66A2RUB6 948 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 EPHB6O15197 1021 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 ATP8B1O43520 1251 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 DNA2P51530 1060 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 GRB10Q13322 594 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 TMEM266Q2M3C6 531 aa14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 LARP4BQ92615 738 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-214ENST00000621814 FAM196BA6NMK8 535 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 MYL1P05976 194 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 SPA17Q15506 151 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 MIIPQ5JXC2 388 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 KCNK18Q7Z418 384 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 FAM114A1Q8IWE2 563 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 GSPT2Q8IYD1 628 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 TBC1D16Q8TBP0 767 aa14.4□□□□□ -0.1
CCDC88A-214ENST00000621814 C7orf25Q9BPX7 421 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms