RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 MAPK8IP2Q13387 824 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-219ENST00000620786 DIXDC1Q155Q3 683 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 ABCA8O94911 1581 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 GTPBP6O43824 516 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-219ENST00000620786 HHATQ5VTY9 493 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 NACC1Q96RE7 527 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 ZSWIM6Q9HCJ5 1215 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 RNF181Q9P0P0 153 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 PCDHB4Q9Y5E5 795 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 MAP3K4Q9Y6R4 1608 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 FAM26FQ5R3K3 315 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 GJA10Q969M2 543 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 HAUS1Q96CS2 278 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 CEP170P1Q96L14 293 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 CFAP57Q96MR6 1250 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 PLEKHF1Q96S99 279 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 RIPOR2Q9Y4F9 1068 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 ADGRL3Q9HAR2 1447 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 SPATA31A3Q5VYP0 1347 aa12.48□□□□□ -0.41
CLIP1-219ENST00000620786 PDIA3P30101 505 aaKnown RBP12.47□□□□□ -0.41
CLIP1-219ENST00000620786 CFAP221Q4G0U5 840 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 FAM160B2Q86V87 743 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 RASGRP4Q8TDF6 673 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 CLIC6Q96NY7 704 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 METTL14Q9HCE5 456 aaKnown RBP12.47□□□□□ -0.41
CLIP1-219ENST00000620786 XPAP23025 273 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-219ENST00000620786 POLR2BP30876 1174 aaKnown RBP12.47□□□□□ -0.41
CLIP1-219ENST00000620786 AOC3Q16853 763 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 WDR11Q9BZH6 1224 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 KDM6BO15054 1643 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 A6NJR5 290 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 PSAPP07602 524 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 SNAP25P60880 206 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 POLR2FP61218 127 aaKnown RBP12.47□□□□□ -0.41
CLIP1-219ENST00000620786 MTERF2Q49AM1 385 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 ZBTB33Q86T24 672 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 I3L4J1 428 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 ECE2O60344 883 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 PALM2Q8IXS6 379 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 RYBPQ8N488 228 aaPredicted RBP12.47□□□□□ -0.41
CLIP1-219ENST00000620786 COA7Q96BR5 231 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 ACCSQ96QU6 501 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 RBSNQ9H1K0 784 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 ANTXR1Q9H6X2 564 aa12.47□□□□□ -0.41
CLIP1-219ENST00000620786 LAD1O00515 517 aa12.46□□□□□ -0.41
CLIP1-219ENST00000620786 RBM6P78332 1123 aaKnown RBP12.46□□□□□ -0.41
CLIP1-219ENST00000620786 RSRC2Q7L4I2 434 aaKnown RBP12.46□□□□□ -0.41
CLIP1-219ENST00000620786 ZBED2Q9BTP6 218 aa12.46□□□□□ -0.41
CLIP1-219ENST00000620786 SOS2Q07890 1332 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-219ENST00000620786 KRT15P19012 456 aa12.46□□□□□ -0.41
CLIP1-219ENST00000620786 CDC37Q16543 378 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-219ENST00000620786 CACTINQ8WUQ7 758 aaKnown RBP12.46□□□□□ -0.41
CLIP1-219ENST00000620786 KRT12Q99456 494 aa12.46□□□□□ -0.41
CLIP1-219ENST00000620786 ATG3Q9NT62 314 aa12.46□□□□□ -0.41
CLIP1-219ENST00000620786 hCG_1984214I3L0E3 225 aa12.46□□□□□ -0.41
CLIP1-219ENST00000620786 MFAP3P55082 362 aa12.46□□□□□ -0.41
CLIP1-219ENST00000620786 ZNF713Q8N859 430 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-219ENST00000620786 PFDN6O15212 129 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 NOL3O60936 208 aaKnown RBP12.46□□□□□ -0.42
CLIP1-219ENST00000620786 IFNB1P01574 187 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 MARK3P27448 753 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 CRKP46108 304 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 SCRN1Q12765 414 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 TACC3Q9Y6A5 838 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 ATP8B3O60423 1300 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 UBN2Q6ZU65 1347 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 MAGI3Q5TCQ9 1506 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 GAP43P17677 238 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 CTAGE3PQ8IX95 158 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 USP28Q96RU2 1077 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 CLIC4Q9Y696 253 aa12.46□□□□□ -0.42
CLIP1-219ENST00000620786 RINT1Q6NUQ1 792 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 PI16Q6UXB8 463 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 MICAL1Q8TDZ2 1067 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 GRK7Q8WTQ7 553 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 SKA2Q8WVK7 121 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-219ENST00000620786 EPSTI1Q96J88 318 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 TARBP1Q13395 1621 aaKnown RBP12.45□□□□□ -0.42
CLIP1-219ENST00000620786 SYNMO15061 1565 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 PRR36Q9H6K5 1346 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 THAP12O43422 761 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 NSFP46459 744 aaKnown RBP12.45□□□□□ -0.42
CLIP1-219ENST00000620786 ADKP55263 362 aaKnown RBP12.45□□□□□ -0.42
CLIP1-219ENST00000620786 USP17L2Q6R6M4 530 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 NOP9Q86U38 636 aaKnown RBP12.45□□□□□ -0.42
CLIP1-219ENST00000620786 TBCKQ8TEA7 893 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 ATP2A3Q93084 1043 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 MYO3BQ8WXR4 1341 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 ARHGAP6O43182 974 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 PRPSAP1Q14558 356 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 CLEC4GQ6UXB4 293 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 LARP4BQ92615 738 aaKnown RBP12.45□□□□□ -0.42
CLIP1-219ENST00000620786 FTOQ9C0B1 505 aaKnown RBP eCLIP12.45□□□□□ -0.42
CLIP1-219ENST00000620786 CDK8P49336 464 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 UBE2SQ16763 222 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 MUM1L1Q5H9M0 696 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 CEP85LQ5SZL2 805 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 ELMSAN1Q6PJG2 1045 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 KRBA2Q6ZNG9 492 aa12.45□□□□□ -0.42
CLIP1-219ENST00000620786 SYNE4Q8N205 404 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms