RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CDK17Q00537 523 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 PAK2Q13177 524 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 C11orf91Q3C1V1 193 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 WDR59Q6PJI9 974 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 TPTE2Q6XPS3 522 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 USP49Q70CQ1 688 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 NLRP10Q86W26 655 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 ZNF34Q8IZ26 560 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 IQCKQ8N0W5 287 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 CNBD1Q8NA66 436 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 IGDCC4Q8TDY8 1250 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 ATP6V1G3Q96LB4 118 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 ALS2CR12Q96Q35 445 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 CWC25Q9NXE8 425 aaPredicted RBP12.01□□□□□ -0.49
UPF3A-212ENST00000619079 TRMT112Q9UI30 125 aaKnown RBP12.01□□□□□ -0.49
UPF3A-212ENST00000619079 HYOU1Q9Y4L1 999 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 CASZ1Q86V15 1759 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 GUCY1A3Q02108 690 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 SPA17Q15506 151 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 ZNF658Q5TYW1 1059 aaPredicted RBP12.01□□□□□ -0.49
UPF3A-212ENST00000619079 SUSD4Q5VX71 490 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 RCSD1Q6JBY9 416 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 TBC1D10CQ8IV04 446 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 FUKQ8N0W3 1084 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 CCDC24Q8N4L8 307 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 NELFBQ8WX92 580 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 IQCDQ96DY2 449 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 NYXQ9GZU5 481 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 BATF3Q9NR55 127 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 RNF14Q9UBS8 474 aa12.01□□□□□ -0.49
UPF3A-212ENST00000619079 PDS5AQ29RF7 1337 aaKnown RBP12.01□□□□□ -0.49
UPF3A-212ENST00000619079 ANKRD18BA2A2Z9 1011 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 GOLGA6L10A6NI86 522 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 DNM2P50570 870 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 FOXO4P98177 505 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 HAUS3Q68CZ6 603 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 KCTD16Q68DU8 428 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 SH2D3CQ8N5H7 860 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 HDAC7Q8WUI4 952 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 SYMPKQ92797 1274 aaKnown RBP12□□□□□ -0.49
UPF3A-212ENST00000619079 RSRC1Q96IZ7 334 aaKnown RBP12□□□□□ -0.49
UPF3A-212ENST00000619079 ISCA1Q9BUE6 129 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 LACRTQ9GZZ8 138 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 PUS7LQ9H0K6 701 aaKnown RBP12□□□□□ -0.49
UPF3A-212ENST00000619079 NHEJ1Q9H9Q4 299 aaPredicted RBP12□□□□□ -0.49
UPF3A-212ENST00000619079 DDX20Q9UHI6 824 aaKnown RBP12□□□□□ -0.49
UPF3A-212ENST00000619079 BCORQ6W2J9 1755 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 A0A087X0B3 334 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 E7EVH7 732 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 GTPBP6O43824 516 aaPredicted RBP12□□□□□ -0.49
UPF3A-212ENST00000619079 KRT14P02533 472 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 PARP1P09874 1014 aaKnown RBP12□□□□□ -0.49
UPF3A-212ENST00000619079 XBP1P17861 261 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 HDLBPQ00341 1268 aaKnown RBP12□□□□□ -0.49
UPF3A-212ENST00000619079 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12□□□□□ -0.49
UPF3A-212ENST00000619079 CYFIP2Q96F07 1278 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 CCDC43Q96MW1 224 aaKnown RBP12□□□□□ -0.49
UPF3A-212ENST00000619079 CEP126Q9P2H0 1117 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 KCNJ14Q9UNX9 436 aa12□□□□□ -0.49
UPF3A-212ENST00000619079 MACROD2A1Z1Q3 448 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 PAX7P23759 505 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 RCAN1P53805 252 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 ZBED6P86452 979 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 WHAMMQ8TF30 809 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 NOC3LQ8WTT2 800 aaKnown RBP11.99□□□□□ -0.49
UPF3A-212ENST00000619079 HOOK2Q96ED9 719 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 FAM89AQ96GI7 184 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 EPSTI1Q96J88 318 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 OSBPL9Q96SU4 736 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 MAGEC2Q9UBF1 373 aaPredicted RBP11.99□□□□□ -0.49
UPF3A-212ENST00000619079 TSKSQ9UJT2 592 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 ZNF233A6NK53 670 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 B4E1Z4 1266 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 H7C1W4 665 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 RTN2O75298 545 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 GBP2P32456 591 aaPredicted RBP11.99□□□□□ -0.49
UPF3A-212ENST00000619079 PTGER2P43116 358 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 RTN1Q16799 776 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 TLDC1Q6P9B6 456 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 MAB21L3Q8N8X9 362 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 ZNF507Q8TCN5 953 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 SCLT1Q96NL6 688 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 THAP9Q9H5L6 903 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 CABP5Q9NP86 173 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 FBXO3Q9UK99 471 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 ARFGEF2Q9Y6D5 1785 aa11.99□□□□□ -0.49
UPF3A-212ENST00000619079 TRIM21P19474 475 aaKnown RBP11.98□□□□□ -0.49
UPF3A-212ENST00000619079 SARNPP82979 210 aaKnown RBP11.98□□□□□ -0.49
UPF3A-212ENST00000619079 TRIM28Q13263 835 aaKnown RBP11.98□□□□□ -0.49
UPF3A-212ENST00000619079 SEMA3FQ13275 785 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 NR5A1Q13285 461 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 ITGB3BPQ13352 177 aaPredicted RBP11.98□□□□□ -0.49
UPF3A-212ENST00000619079 XRCC4Q13426 336 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 SLMAPQ14BN4 828 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 CCDC96Q2M329 555 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 NBPF20Q3BBV1 942 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 LACTB2Q53H82 288 aaPredicted RBP11.98□□□□□ -0.49
UPF3A-212ENST00000619079 SH2D4AQ9H788 454 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 CNNM2Q9H8M5 875 aa11.98□□□□□ -0.49
UPF3A-212ENST00000619079 GDF3Q9NR23 364 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms