RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TTC19Q6DKK2 380 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-212ENST00000616140 USP17L2Q6R6M4 530 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 OTUD6AQ7L8S5 288 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 TARBP1Q13395 1621 aaKnown RBP15.36■□□□□ 0.05
CPSF1-212ENST00000616140 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-212ENST00000616140 CYP27B1O15528 508 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 FOSP01100 380 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-212ENST00000616140 ADCY8P40145 1251 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 CCT5P48643 541 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 GEN1Q17RS7 908 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 FBXO38Q6PIJ6 1188 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 SDCCAG8Q86SQ7 713 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-212ENST00000616140 TRIM6Q9C030 488 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-212ENST00000616140 MRPL11Q9Y3B7 192 aaKnown RBP15.35■□□□□ 0.05
CPSF1-212ENST00000616140 ABCC12Q96J65 1359 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 PRPF3O43395 683 aaKnown RBP15.35■□□□□ 0.05
CPSF1-212ENST00000616140 ATP8B1O43520 1251 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 DIXDC1Q155Q3 683 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 PIGSQ96S52 555 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 KIF2CQ99661 725 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 ANAPC4Q9UJX5 808 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 CCNE1P24864 410 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 CCDC62Q6P9F0 684 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 CAPN12Q6ZSI9 719 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 CDAN1Q8IWY9 1227 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 VPS52Q8N1B4 723 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 RNF34Q969K3 372 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 C1orf112Q9NSG2 853 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 FAN1Q9Y2M0 1017 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 SLC16A2P36021 539 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 LGSNQ5TDP6 509 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 PLCD3Q8N3E9 789 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 COA7Q96BR5 231 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 DYNLL2Q96FJ2 89 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 PAGE5Q96GU1 130 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 PDLIM2Q96JY6 352 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 CCDC17Q96LX7 622 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 XDHP47989 1333 aa15.35■□□□□ 0.05
CPSF1-212ENST00000616140 HEXIM1O94992 359 aaKnown RBP15.34■□□□□ 0.05
CPSF1-212ENST00000616140 NDUFA10O95299 355 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 CA8P35219 290 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 PPM1FP49593 454 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-212ENST00000616140 ZBED6P86452 979 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 KSR1Q8IVT5 923 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 SUPT20HQ8NEM7 779 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 PIGBQ92521 554 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 SERPINB13Q9UIV8 391 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 LEMD3Q9Y2U8 911 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 TCP10L2B9ZVM9 353 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 ATF7P17544 494 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-212ENST00000616140 CLNS1AP54105 237 aaKnown RBP15.34■□□□□ 0.05
CPSF1-212ENST00000616140 IRX3P78415 501 aaPredicted RBP15.34■□□□□ 0.05
CPSF1-212ENST00000616140 ASPRV1Q53RT3 343 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 SARM1Q6SZW1 724 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 EPB41L5Q9HCM4 733 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 KCNG1Q9UIX4 513 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 IVNS1ABPQ9Y6Y0 642 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 PTPREP23469 700 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 LIG4P49917 911 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 ERFEQ4G0M1 354 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 BSPRYQ5W0U4 402 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 KCTD1Q719H9 257 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 RWDD2AQ9UIY3 292 aa15.34■□□□□ 0.05
CPSF1-212ENST00000616140 RIC8AQ9NPQ8 531 aa15.33■□□□□ 0.05
CPSF1-212ENST00000616140 N4BP1O75113 896 aaKnown RBP15.33■□□□□ 0.04
CPSF1-212ENST00000616140 PLEKHA8P1O95397 391 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 PLCG1P19174 1290 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 MESDQ14696 234 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 LLGL1Q15334 1064 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 ABCB5Q2M3G0 1257 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 NIM1KQ8IY84 436 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 BZW2Q9Y6E2 419 aaKnown RBP15.33■□□□□ 0.04
CPSF1-212ENST00000616140 ATP10DQ9P241 1426 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 GNPTABQ3T906 1256 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 LRCH2Q5VUJ6 765 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 MAGOHBQ96A72 148 aaKnown RBP15.33■□□□□ 0.04
CPSF1-212ENST00000616140 STK38LQ9Y2H1 464 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 CASP1P29466 404 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 KRT31Q15323 416 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 TACO1Q9BSH4 297 aaKnown RBP15.33■□□□□ 0.04
CPSF1-212ENST00000616140 TEKT3Q9BXF9 490 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 STK17AQ9UEE5 414 aa15.33■□□□□ 0.04
CPSF1-212ENST00000616140 BCORL1Q5H9F3 1711 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 USP17L3A6NCW0 530 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 USP17L4A6NCW7 530 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 STK10O94804 968 aaKnown RBP15.32■□□□□ 0.04
CPSF1-212ENST00000616140 PDE6BP35913 854 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 EIF4A3P38919 411 aaKnown RBP15.32■□□□□ 0.04
CPSF1-212ENST00000616140 PDE6CP51160 858 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 SNX16P57768 344 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 UBXN2AP68543 259 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 MRPS9P82933 396 aaKnown RBP15.32■□□□□ 0.04
CPSF1-212ENST00000616140 USP17L1Q7RTZ2 530 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 LMNTD2Q8IXW0 634 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 KLHL14Q9P2G3 628 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 GDAQ9Y2T3 454 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 ERVV-1B6SEH8 477 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 THAP12O43422 761 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 TTLL1O95922 423 aa15.32■□□□□ 0.04
CPSF1-212ENST00000616140 MYL1P05976 194 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms