RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 EPHB4P54760 987 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 CCNI2Q6ZMN8 369 aaPredicted RBP13.94□□□□□ -0.18
LIG1-221ENST00000613670 KRT25Q7Z3Z0 450 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 REXO1Q8N1G1 1221 aaKnown RBP13.94□□□□□ -0.18
LIG1-221ENST00000613670 NDST4Q9H3R1 872 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 FAM53CQ9NYF3 392 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 CDHR2Q9BYE9 1310 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 RGPD8O14715 1765 aaPredicted RBP13.94□□□□□ -0.18
LIG1-221ENST00000613670 OVOS2A0A0G2JMS6 1433 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 TCRBV5S4A2TA0A5A2 114 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 ZNF76P36508 570 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 IFT88Q13099 833 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 PFKFB3Q16875 520 aaPredicted RBP13.94□□□□□ -0.18
LIG1-221ENST00000613670 TXNRD1Q16881 649 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 ZFYVE27Q5T4F4 411 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 SPATA4Q8NEY3 305 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 SELENOSQ9BQE4 189 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 ARHGAP25P42331 645 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 PMS1P54277 932 aaKnown RBP13.94□□□□□ -0.18
LIG1-221ENST00000613670 GFPT1Q06210 699 aaPredicted RBP13.94□□□□□ -0.18
LIG1-221ENST00000613670 STK4Q13043 487 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 GBP6Q6ZN66 633 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 ZSCAN29Q8IWY8 852 aaPredicted RBP13.94□□□□□ -0.18
LIG1-221ENST00000613670 ELOA2Q8IYF1 753 aaPredicted RBP13.94□□□□□ -0.18
LIG1-221ENST00000613670 FNBP4Q8N3X1 1017 aaPredicted RBP13.94□□□□□ -0.18
LIG1-221ENST00000613670 ARFGAP2Q8N6H7 521 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 RETREG2Q8NC44 543 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 SLC44A5Q8NCS7 719 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 TMEM60Q9H2L4 133 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 STIM2Q9P246 746 aa13.94□□□□□ -0.18
LIG1-221ENST00000613670 PACSIN2Q9UNF0 486 aaPredicted RBP13.94□□□□□ -0.18
LIG1-221ENST00000613670 LDHCP07864 332 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 IL6STP40189 918 aaPredicted RBP13.93□□□□□ -0.18
LIG1-221ENST00000613670 MECOMQ03112 1051 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 RPS6KA1Q15418 735 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 PKN1Q16512 942 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 ARL6IP4Q66PJ3 421 aaKnown RBP13.93□□□□□ -0.18
LIG1-221ENST00000613670 ADAT2Q7Z6V5 191 aaKnown RBP13.93□□□□□ -0.18
LIG1-221ENST00000613670 NEK8Q86SG6 692 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 MS4A14Q96JA4 679 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 EHD4Q9H223 541 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 VEGFAP15692 232 aaPredicted RBP13.93□□□□□ -0.18
LIG1-221ENST00000613670 TROAPQ12815 778 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 TRAPPC11Q7Z392 1133 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 CABS1Q96KC9 395 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 ARPP21Q9UBL0 812 aaPredicted RBP13.93□□□□□ -0.18
LIG1-221ENST00000613670 DMGDHQ9UI17 866 aaKnown RBP13.93□□□□□ -0.18
LIG1-221ENST00000613670 FRMPD2Q68DX3 1309 aaPredicted RBP13.93□□□□□ -0.18
LIG1-221ENST00000613670 LRRC53A6NM62 1247 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 CYP19A1P11511 503 aaPredicted RBP13.93□□□□□ -0.18
LIG1-221ENST00000613670 DDB1Q16531 1140 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 FBXW10Q5XX13 1052 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 USP17L2Q6R6M4 530 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 CCDC91Q7Z6B0 441 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 TBC1D5Q92609 795 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 OSBPL9Q96SU4 736 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 SETDB2Q96T68 719 aa13.93□□□□□ -0.18
LIG1-221ENST00000613670 RGPD1P0DJD0 1748 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 PSMD14O00487 310 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 PPP1R2P41236 205 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 HERVK_113P62684 666 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 ASIC2Q16515 512 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 NAA35Q5VZE5 725 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 ADGRA1Q86SQ6 560 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 TBCKQ8TEA7 893 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 SPATA31A3Q5VYP0 1347 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 PNPLA7Q6ZV29 1317 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 GCOM1H8Y6P7 765 aaPredicted RBP13.92□□□□□ -0.18
LIG1-221ENST00000613670 KRT14P02533 472 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 MYZAPP0CAP1 466 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 CRKLP46109 303 aaKnown RBP13.92□□□□□ -0.18
LIG1-221ENST00000613670 IRAK1P51617 712 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 LRRC27Q9C0I9 530 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 ADAMTS1Q9UHI8 967 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 FMN2Q9NZ56 1722 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 KRT13P13646 458 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 CTNNA1P35221 906 aaKnown RBP13.92□□□□□ -0.18
LIG1-221ENST00000613670 RPS8P62241 208 aaKnown RBP13.92□□□□□ -0.18
LIG1-221ENST00000613670 DPH5Q9H2P9 285 aa13.92□□□□□ -0.18
LIG1-221ENST00000613670 C6orf229H3BNL8 230 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 HGSO14964 777 aaPredicted RBP13.91□□□□□ -0.18
LIG1-221ENST00000613670 DIXDC1Q155Q3 683 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 KRT71Q3SY84 523 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 TEX11Q8IYF3 940 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 HDAC7Q8WUI4 952 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 ZNF512BQ96KM6 892 aaPredicted RBP13.91□□□□□ -0.18
LIG1-221ENST00000613670 DCP1AQ9NPI6 582 aaPredicted RBP13.91□□□□□ -0.18
LIG1-221ENST00000613670 SNX12Q9UMY4 172 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 TMEM110-MUSTN1A8MSY1 372 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 TULP2O00295 520 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 VWA3BQ502W6 1294 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 MYOCDQ8IZQ8 938 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 PROCA1Q8NCQ7 364 aaPredicted RBP13.91□□□□□ -0.18
LIG1-221ENST00000613670 A0A1W2PQC6 194 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 ANO9A1A5B4 782 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 IFI16Q16666 785 aaKnown RBP13.91□□□□□ -0.18
LIG1-221ENST00000613670 MAN2A1Q16706 1144 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 ERFEQ4G0M1 354 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 WDR93Q6P2C0 686 aa13.91□□□□□ -0.18
LIG1-221ENST00000613670 TMX4Q9H1E5 349 aaPredicted RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms