RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 POTEEQ6S8J3 1075 aa16.24■□□□□ 0.19
USP39-220ENST00000613444 PROCA1Q8NCQ7 364 aaPredicted RBP16.24■□□□□ 0.19
USP39-220ENST00000613444 CLEC4DQ8WXI8 215 aa16.24■□□□□ 0.19
USP39-220ENST00000613444 ANO3Q9BYT9 981 aa16.24■□□□□ 0.19
USP39-220ENST00000613444 RAVER2Q9HCJ3 691 aaKnown RBP16.24■□□□□ 0.19
USP39-220ENST00000613444 SPDYE16A6NNV3 312 aaPredicted RBP16.24■□□□□ 0.19
USP39-220ENST00000613444 HOXA7P31268 230 aaPredicted RBP16.24■□□□□ 0.19
USP39-220ENST00000613444 HOXA13P31271 388 aaPredicted RBP16.24■□□□□ 0.19
USP39-220ENST00000613444 GHRHRQ02643 423 aa16.24■□□□□ 0.19
USP39-220ENST00000613444 FAM160A1Q05DH4 1040 aa16.24■□□□□ 0.19
USP39-220ENST00000613444 CPXCR1Q8N123 301 aa16.24■□□□□ 0.19
USP39-220ENST00000613444 SYAP1Q96A49 352 aaPredicted RBP16.24■□□□□ 0.19
USP39-220ENST00000613444 FERMT2Q96AC1 680 aa16.24■□□□□ 0.19
USP39-220ENST00000613444 GBA2Q9HCG7 927 aaPredicted RBP16.24■□□□□ 0.19
USP39-220ENST00000613444 ZNF214Q9UL59 606 aaPredicted RBP16.24■□□□□ 0.19
USP39-220ENST00000613444 CCNT1O60563 726 aaKnown RBP16.23■□□□□ 0.19
USP39-220ENST00000613444 ZBED4O75132 1171 aa16.23■□□□□ 0.19
USP39-220ENST00000613444 ZNF445P59923 1031 aa16.23■□□□□ 0.19
USP39-220ENST00000613444 ORC2Q13416 577 aaPredicted RBP16.23■□□□□ 0.19
USP39-220ENST00000613444 CST9Q5W186 159 aa16.23■□□□□ 0.19
USP39-220ENST00000613444 ARL6IP4Q66PJ3 421 aaKnown RBP16.23■□□□□ 0.19
USP39-220ENST00000613444 MCTP2Q6DN12 878 aa16.23■□□□□ 0.19
USP39-220ENST00000613444 CSRNP2Q9H175 543 aa16.23■□□□□ 0.19
USP39-220ENST00000613444 PFKFB1P16118 471 aa16.23■□□□□ 0.19
USP39-220ENST00000613444 CCDC73Q6ZRK6 1079 aa16.23■□□□□ 0.19
USP39-220ENST00000613444 DDX19AQ9NUU7 478 aaKnown RBP16.23■□□□□ 0.19
USP39-220ENST00000613444 NFIBO00712 420 aa16.22■□□□□ 0.19
USP39-220ENST00000613444 ATP2A1O14983 1001 aa16.22■□□□□ 0.19
USP39-220ENST00000613444 CELF2O95319 508 aaKnown RBP16.22■□□□□ 0.19
USP39-220ENST00000613444 TDP2O95551 362 aa16.22■□□□□ 0.19
USP39-220ENST00000613444 FOSP01100 380 aaPredicted RBP16.22■□□□□ 0.19
USP39-220ENST00000613444 OAZ1P54368 228 aa16.22■□□□□ 0.19
USP39-220ENST00000613444 TMEM132BQ14DG7 1078 aa16.22■□□□□ 0.19
USP39-220ENST00000613444 SPECC1Q5M775 1068 aa16.22■□□□□ 0.19
USP39-220ENST00000613444 PPP4R3AQ6IN85 833 aa16.22■□□□□ 0.19
USP39-220ENST00000613444 CHADLQ6NUI6 762 aa16.22■□□□□ 0.19
USP39-220ENST00000613444 SLC10A4Q96EP9 437 aa16.22■□□□□ 0.19
USP39-220ENST00000613444 HOXC10Q9NYD6 342 aa16.22■□□□□ 0.19
USP39-220ENST00000613444 GCOM1H8Y6P7 765 aaPredicted RBP16.21■□□□□ 0.19
USP39-220ENST00000613444 SLC37A4O43826 429 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 CFBP00751 764 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 POLR2MP0CAP2 368 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 SREBF1P36956 1147 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 HSD17B4P51659 736 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 GSE1Q14687 1217 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 MUM1L1Q5H9M0 696 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 GADL1Q6ZQY3 521 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 USP49Q70CQ1 688 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 CLSTN2Q9H4D0 955 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 PNMA2Q9UL42 364 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 RIPK3Q9Y572 518 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 SYCE3A1L190 88 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 LAD1O00515 517 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 NEMFO60524 1076 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 ALAS1P13196 640 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 USP11P51784 963 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 MBOAT7Q96N66 472 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 MTMR9Q96QG7 549 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 AGTPBP1Q9UPW5 1226 aa16.21■□□□□ 0.19
USP39-220ENST00000613444 VWA3AA6NCI4 1184 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 SPDYE3A6NKU9 549 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 PRPHP41219 470 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 ARHGAP4P98171 946 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 GPAT2Q6NUI2 795 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 RBM43Q6ZSC3 357 aaKnown RBP16.2■□□□□ 0.18
USP39-220ENST00000613444 POTEDQ86YR6 584 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 NUP62CLQ9H1M0 184 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 CYP3A7-CYP3A51PA0A087WV96 503 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 CYP3A7P24462 503 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 LBX2Q6XYB7 198 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 GAS2L3Q86XJ1 694 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 C2orf69Q8N8R5 385 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 COL20A1Q9P218 1284 aa16.2■□□□□ 0.18
USP39-220ENST00000613444 ZNF202O95125 648 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 OR52Z1P0C646 297 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 CAMK4Q16566 473 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 MOXD1Q6UVY6 613 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 FCHSD1Q86WN1 690 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 EPSTI1Q96J88 318 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 MS4A4AQ96JQ5 239 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 TRERF1Q96PN7 1200 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 KCNH3Q9ULD8 1083 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 LCTP09848 1927 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 CYP3A4P08684 503 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 GCFC2P16383 781 aaKnown RBP16.19■□□□□ 0.18
USP39-220ENST00000613444 CIITAP33076 1130 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 SNAPC2Q13487 334 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 SNRNP48Q6IEG0 339 aaKnown RBP16.19■□□□□ 0.18
USP39-220ENST00000613444 FASTKD5Q7L8L6 764 aaKnown RBP16.19■□□□□ 0.18
USP39-220ENST00000613444 TEX13BQ9BXU2 312 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 ASCC2Q9H1I8 757 aaPredicted RBP16.19■□□□□ 0.18
USP39-220ENST00000613444 HOMER2Q9NSB8 354 aa16.19■□□□□ 0.18
USP39-220ENST00000613444 CTDP1Q9Y5B0 961 aaPredicted RBP16.19■□□□□ 0.18
USP39-220ENST00000613444 SYKP43405 635 aa16.18■□□□□ 0.18
USP39-220ENST00000613444 DTHD1Q6ZMT9 781 aa16.18■□□□□ 0.18
USP39-220ENST00000613444 MCF2L2Q86YR7 1114 aa16.18■□□□□ 0.18
USP39-220ENST00000613444 SAMD3Q8N6K7 520 aa16.18■□□□□ 0.18
USP39-220ENST00000613444 SYMPKQ92797 1274 aaKnown RBP16.18■□□□□ 0.18
USP39-220ENST00000613444 MAP3K20Q9NYL2 800 aaKnown RBP16.18■□□□□ 0.18
USP39-220ENST00000613444 DDX25Q9UHL0 483 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms