RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 BMP1P13497 986 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 CALML3P27482 149 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 CST5P28325 142 aaPredicted RBP6.13□□□□□ -1.43
VRK3-226ENST00000602029 KCNJ6P48051 423 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 OAZ1P54368 228 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 IRX6P78412 446 aaPredicted RBP6.13□□□□□ -1.43
VRK3-226ENST00000602029 PPARAQ07869 468 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 PDE4DQ08499 809 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 ADGRE1Q14246 886 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 TKFCQ3LXA3 575 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 EP400NLQ6ZTU2 488 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 ZNF467Q7Z7K2 595 aaPredicted RBP6.13□□□□□ -1.43
VRK3-226ENST00000602029 KBTBD3Q8NAB2 608 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 OR6J1Q8NGC5 347 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 PPP1R13LQ8WUF5 828 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 ARNTL2Q8WYA1 636 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 HERVK_113Q902F9 699 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 STRBPQ96SI9 672 aaKnown RBP6.13□□□□□ -1.43
VRK3-226ENST00000602029 UPF3AQ9H1J1 476 aaKnown RBP6.13□□□□□ -1.43
VRK3-226ENST00000602029 SLC38A10Q9HBR0 1119 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 PDGFCQ9NRA1 345 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 POLR3EQ9NVU0 708 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 MTMR4Q9NYA4 1195 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 ADD3Q9UEY8 706 aaKnown RBP6.13□□□□□ -1.43
VRK3-226ENST00000602029 MTUS1Q9ULD2 1270 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 YBX2Q9Y2T7 364 aaKnown RBP6.13□□□□□ -1.43
VRK3-226ENST00000602029 UMODL1Q5DID0 1318 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 A0A0G2JMZ2 1700 aa6.13□□□□□ -1.43
VRK3-226ENST00000602029 TRIOO75962 3097 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 DNAJC25-GNG10A0A024R161 153 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 PATL2C9JE40 543 aaKnown RBP6.12□□□□□ -1.43
VRK3-226ENST00000602029 RFXAPO00287 272 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 ATP2A1O14983 1001 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 DHX16O60231 1041 aaKnown RBP6.12□□□□□ -1.43
VRK3-226ENST00000602029 B4GALT4O60513 344 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 CA3P07451 260 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 SMPD1P17405 629 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 PTGS1P23219 599 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 CPT1AP50416 773 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 CDK7P50613 346 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 KCNQ1P51787 676 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 TFF2Q03403 129 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 PPP2R5BQ15173 497 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 SBK1Q52WX2 424 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 TMEM31Q5JXX7 168 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 FRMPD2Q68DX3 1309 aaPredicted RBP6.12□□□□□ -1.43
VRK3-226ENST00000602029 IQSEC1Q6DN90 963 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 GIMAP6Q6P9H5 292 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 C16orf59Q7L2K0 433 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 CENPQQ7L2Z9 268 aaPredicted RBP6.12□□□□□ -1.43
VRK3-226ENST00000602029 CHST3Q7LGC8 479 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 GMCL1P1Q8NEA9 526 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 STAG1Q8WVM7 1258 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 OSBP2Q969R2 916 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 UIMC1Q96RL1 719 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 NOC4LQ9BVI4 516 aaKnown RBP6.12□□□□□ -1.43
VRK3-226ENST00000602029 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.12□□□□□ -1.43
VRK3-226ENST00000602029 WDR11Q9BZH6 1224 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 GPCPD1Q9NPB8 672 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 A1CFQ9NQ94 594 aaKnown RBP6.12□□□□□ -1.43
VRK3-226ENST00000602029 ZBTB40Q9NUA8 1239 aa6.12□□□□□ -1.43
VRK3-226ENST00000602029 TRMT13Q9NUP7 481 aaKnown RBP6.12□□□□□ -1.43
VRK3-226ENST00000602029 TNKSO95271 1327 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 SOWAHBA6NEL2 793 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 B4DLN1 442 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 TLL1O43897 1013 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 SSTR3P32745 418 aaPredicted RBP6.11□□□□□ -1.43
VRK3-226ENST00000602029 SLC16A2P36021 539 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 MRPL12P52815 198 aaKnown RBP6.11□□□□□ -1.43
VRK3-226ENST00000602029 NHLH1Q02575 133 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 CTDSPL2Q05D32 466 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 BAATQ14032 418 aaPredicted RBP6.11□□□□□ -1.43
VRK3-226ENST00000602029 TTLL4Q14679 1199 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 USH1GQ495M9 461 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 MUM1L1Q5H9M0 696 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 CCSAPQ6IQ19 270 aaPredicted RBP6.11□□□□□ -1.43
VRK3-226ENST00000602029 FAM117BQ6P1L5 589 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 SIRT2Q8IXJ6 389 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 IFNL3Q8IZI9 196 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 CCDC155Q8N6L0 562 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 NEDD1Q8NHV4 660 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 PURBQ96QR8 312 aaKnown RBP6.11□□□□□ -1.43
VRK3-226ENST00000602029 SEC62Q99442 399 aaKnown RBP6.11□□□□□ -1.43
VRK3-226ENST00000602029 PHOX2BQ99453 314 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 MTG1Q9BT17 334 aaPredicted RBP6.11□□□□□ -1.43
VRK3-226ENST00000602029 ALDH8A1Q9H2A2 487 aaPredicted RBP6.11□□□□□ -1.43
VRK3-226ENST00000602029 EPB41L4AQ9HCS5 686 aaPredicted RBP6.11□□□□□ -1.43
VRK3-226ENST00000602029 VTA1Q9NP79 307 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 PRR12Q9ULL5 1215 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 PCDHA11Q9Y5I1 949 aa6.11□□□□□ -1.43
VRK3-226ENST00000602029 ASTN1O14525 1302 aa6.1□□□□□ -1.43
VRK3-226ENST00000602029 MYH8P13535 1937 aa6.1□□□□□ -1.43
VRK3-226ENST00000602029 NMT2O60551 498 aa6.1□□□□□ -1.43
VRK3-226ENST00000602029 GPR37L1O60883 481 aa6.1□□□□□ -1.43
VRK3-226ENST00000602029 CD4P01730 458 aa6.1□□□□□ -1.43
VRK3-226ENST00000602029 PFKMP08237 780 aa6.1□□□□□ -1.43
VRK3-226ENST00000602029 TXNP10599 105 aaKnown RBP6.1□□□□□ -1.43
VRK3-226ENST00000602029 ALDH5A1P51649 535 aaPredicted RBP6.1□□□□□ -1.43
VRK3-226ENST00000602029 BFSP2Q13515 415 aa6.1□□□□□ -1.43
VRK3-226ENST00000602029 NBPF20Q3BBV1 942 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms