RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CNTN2Q02246 1040 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 GHRHRQ02643 423 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 TRAF1Q13077 416 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 SLC35G1Q2M3R5 365 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 NSMFQ6X4W1 530 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 FBXO11Q86XK2 927 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 FBXL16Q8N461 479 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 LZTS2Q9BRK4 669 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 SPZ1Q9BXG8 430 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 AMNQ9BXJ7 453 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 USP26Q9BXU7 913 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 CNPY2Q9Y2B0 182 aa18.8■□□□□ 0.6
LSM4-206ENST00000600289 BAZ2BQ9UIF8 2168 aaKnown RBP18.8■□□□□ 0.6
LSM4-206ENST00000600289 ASTN1O14525 1302 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 KIAA1217Q5T5P2 1943 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 ASB14A6NK59 587 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 CYTH3O43739 400 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 DHX16O60231 1041 aaKnown RBP18.79■□□□□ 0.6
LSM4-206ENST00000600289 CNGA1P29973 690 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 GNAQP50148 359 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 NFXL1Q6ZNB6 911 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 ARMCX2Q7L311 632 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 MORC4Q8TE76 937 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 CDX2Q99626 313 aaPredicted RBP18.79■□□□□ 0.6
LSM4-206ENST00000600289 KATNBL1Q9H079 304 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 ABHD16BQ9H3Z7 469 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 C11orf49Q9H6J7 331 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.79■□□□□ 0.6
LSM4-206ENST00000600289 ADD3Q9UEY8 706 aaKnown RBP18.79■□□□□ 0.6
LSM4-206ENST00000600289 SLC12A7Q9Y666 1083 aa18.79■□□□□ 0.6
LSM4-206ENST00000600289 EIF5BO60841 1220 aaKnown RBP18.78■□□□□ 0.6
LSM4-206ENST00000600289 RCAN1P53805 252 aa18.78■□□□□ 0.6
LSM4-206ENST00000600289 BAATQ14032 418 aaPredicted RBP18.78■□□□□ 0.6
LSM4-206ENST00000600289 USH1GQ495M9 461 aa18.78■□□□□ 0.6
LSM4-206ENST00000600289 PRAMEF19Q5SWL8 479 aa18.78■□□□□ 0.6
LSM4-206ENST00000600289 SLC30A10Q6XR72 485 aa18.78■□□□□ 0.6
LSM4-206ENST00000600289 RNF207Q6ZRF8 634 aa18.78■□□□□ 0.6
LSM4-206ENST00000600289 CCDC144CPQ8IYA2 1237 aa18.78■□□□□ 0.6
LSM4-206ENST00000600289 NUP133Q8WUM0 1156 aa18.78■□□□□ 0.6
LSM4-206ENST00000600289 LRRC2Q9BYS8 371 aa18.78■□□□□ 0.6
LSM4-206ENST00000600289 MRPL11Q9Y3B7 192 aaKnown RBP18.78■□□□□ 0.6
LSM4-206ENST00000600289 PPP1R11O60927 126 aaPredicted RBP18.77■□□□□ 0.6
LSM4-206ENST00000600289 AKR1A1P14550 325 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 PSMA5P28066 241 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 ZNF697Q5TEC3 545 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 APOA5Q6Q788 366 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 BLOC1S2Q6QNY1 142 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 MCF2L2Q86YR7 1114 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 SAMD3Q8N6K7 520 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 DNERQ8NFT8 737 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 SYMPKQ92797 1274 aaKnown RBP18.77■□□□□ 0.6
LSM4-206ENST00000600289 JAKMIP1Q96N16 626 aaKnown RBP18.77■□□□□ 0.6
LSM4-206ENST00000600289 MYL10Q9BUA6 226 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 AGXT2Q9BYV1 514 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 VAT1LQ9HCJ6 419 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 NID2Q14112 1375 aa18.77■□□□□ 0.6
LSM4-206ENST00000600289 PNMA6FA0A0J9YX94 578 aa18.76■□□□□ 0.59
LSM4-206ENST00000600289 PTPDC1A2A3K4 754 aa18.76■□□□□ 0.59
LSM4-206ENST00000600289 COL6A1P12109 1028 aa18.76■□□□□ 0.59
LSM4-206ENST00000600289 RPS6KB1P23443 525 aa18.76■□□□□ 0.59
LSM4-206ENST00000600289 ALDH5A1P51649 535 aaPredicted RBP18.76■□□□□ 0.59
LSM4-206ENST00000600289 RPS6P62753 249 aaKnown RBP18.76■□□□□ 0.59
LSM4-206ENST00000600289 MDM2Q00987 491 aaPredicted RBP18.76■□□□□ 0.59
LSM4-206ENST00000600289 ACVR2BQ13705 512 aa18.76■□□□□ 0.59
LSM4-206ENST00000600289 FANCBQ8NB91 859 aa18.76■□□□□ 0.59
LSM4-206ENST00000600289 PIGSQ96S52 555 aa18.76■□□□□ 0.59
LSM4-206ENST00000600289 TM6SF1Q9BZW5 370 aa18.76■□□□□ 0.59
LSM4-206ENST00000600289 MAP3K20Q9NYL2 800 aaKnown RBP18.76■□□□□ 0.59
LSM4-206ENST00000600289 DNM1LO00429 736 aa18.75■□□□□ 0.59
LSM4-206ENST00000600289 SYNE3Q6ZMZ3 975 aa18.75■□□□□ 0.59
LSM4-206ENST00000600289 RBM28Q9NW13 759 aaKnown RBP18.75■□□□□ 0.59
LSM4-206ENST00000600289 FAM184BQ9ULE4 1060 aa18.75■□□□□ 0.59
LSM4-206ENST00000600289 TNFRSF10AO00220 468 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 OPLAHO14841 1288 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 RARBP10826 455 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 EDNRBP24530 442 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 HOXD11P31277 338 aaPredicted RBP18.74■□□□□ 0.59
LSM4-206ENST00000600289 HSD17B4P51659 736 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 TMTC3Q6ZXV5 915 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 MICU3Q86XE3 530 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 HOMER1Q86YM7 354 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 SRBD1Q8N5C6 995 aaKnown RBP18.74■□□□□ 0.59
LSM4-206ENST00000600289 ARRDC4Q8NCT1 418 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 TCEANC2Q96MN5 208 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 MPHOSPH6Q99547 160 aaKnown RBP18.74■□□□□ 0.59
LSM4-206ENST00000600289 ZSWIM6Q9HCJ5 1215 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 VTA1Q9NP79 307 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 ZHX1Q9UKY1 873 aaPredicted RBP18.74■□□□□ 0.59
LSM4-206ENST00000600289 BRPF3Q9ULD4 1205 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 PCDHA1Q9Y5I3 950 aa18.74■□□□□ 0.59
LSM4-206ENST00000600289 ZBTB43O43298 467 aa18.73■□□□□ 0.59
LSM4-206ENST00000600289 PLEKHA8P1O95397 391 aa18.73■□□□□ 0.59
LSM4-206ENST00000600289 CALML3P27482 149 aa18.73■□□□□ 0.59
LSM4-206ENST00000600289 PPP2R5BQ15173 497 aa18.73■□□□□ 0.59
LSM4-206ENST00000600289 SYTL5Q8TDW5 730 aaPredicted RBP18.73■□□□□ 0.59
LSM4-206ENST00000600289 RRP36Q96EU6 259 aaKnown RBP18.73■□□□□ 0.59
LSM4-206ENST00000600289 PURBQ96QR8 312 aaKnown RBP18.73■□□□□ 0.59
LSM4-206ENST00000600289 XPNPEP3Q9NQH7 507 aa18.73■□□□□ 0.59
LSM4-206ENST00000600289 KLF18A0A0U1RQI7 1052 aa18.72■□□□□ 0.59
LSM4-206ENST00000600289 B4DLN1 442 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms