RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 KCTD2Q14681 263 aa21.03■□□□□ 0.96
LIG1-216ENST00000598938 ME3Q16798 604 aa21.03■□□□□ 0.96
LIG1-216ENST00000598938 NOL8Q76FK4 1167 aaKnown RBP21.03■□□□□ 0.96
LIG1-216ENST00000598938 PIBF1Q8WXW3 757 aa21.03■□□□□ 0.96
LIG1-216ENST00000598938 SLKQ9H2G2 1235 aaPredicted RBP21.03■□□□□ 0.96
LIG1-216ENST00000598938 SEC63Q9UGP8 760 aaKnown RBP21.03■□□□□ 0.96
LIG1-216ENST00000598938 HOXC6P09630 235 aa21.02■□□□□ 0.96
LIG1-216ENST00000598938 IFNAR1P17181 557 aa21.02■□□□□ 0.96
LIG1-216ENST00000598938 RGS2P41220 211 aa21.02■□□□□ 0.96
LIG1-216ENST00000598938 SCRN1Q12765 414 aa21.02■□□□□ 0.96
LIG1-216ENST00000598938 TRAF1Q13077 416 aa21.02■□□□□ 0.96
LIG1-216ENST00000598938 HMX1Q9NP08 348 aaPredicted RBP21.02■□□□□ 0.96
LIG1-216ENST00000598938 A1CFQ9NQ94 594 aaKnown RBP21.02■□□□□ 0.96
LIG1-216ENST00000598938 LIMCH1Q9UPQ0 1083 aa21.02■□□□□ 0.96
LIG1-216ENST00000598938 PCDHA1Q9Y5I3 950 aa21.02■□□□□ 0.96
LIG1-216ENST00000598938 BAZ2BQ9UIF8 2168 aaKnown RBP21.02■□□□□ 0.95
LIG1-216ENST00000598938 SMCHD1A6NHR9 2005 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 DNAJC25-GNG10A0A024R161 153 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 hCG_1642624A0A1W2PR95 340 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 NFIBO00712 420 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 ST18O60284 1047 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 COBLO75128 1261 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 XRCC5P13010 732 aaKnown RBP21.01■□□□□ 0.95
LIG1-216ENST00000598938 LRIT3Q3SXY7 679 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 ANKRD35Q8N283 1001 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 DIS3LQ8TF46 1054 aaKnown RBP21.01■□□□□ 0.95
LIG1-216ENST00000598938 APBA2Q99767 749 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 MAF1Q9H063 256 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 MRPL11Q9Y3B7 192 aaKnown RBP21.01■□□□□ 0.95
LIG1-216ENST00000598938 MYH6P13533 1939 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 PFASO15067 1338 aa21.01■□□□□ 0.95
LIG1-216ENST00000598938 CYP2B6P20813 491 aa21■□□□□ 0.95
LIG1-216ENST00000598938 RGS22Q8NE09 1264 aa21■□□□□ 0.95
LIG1-216ENST00000598938 GTF3C6Q969F1 213 aa21■□□□□ 0.95
LIG1-216ENST00000598938 CYP39A1Q9NYL5 469 aa21■□□□□ 0.95
LIG1-216ENST00000598938 V9GY48 417 aaPredicted RBP21■□□□□ 0.95
LIG1-216ENST00000598938 A0A0C4DFX4 3053 aa20.99■□□□□ 0.95
LIG1-216ENST00000598938 OPLAHO14841 1288 aa20.99■□□□□ 0.95
LIG1-216ENST00000598938 PRPF3O43395 683 aaKnown RBP20.99■□□□□ 0.95
LIG1-216ENST00000598938 PGK2P07205 417 aa20.99■□□□□ 0.95
LIG1-216ENST00000598938 ZNF792Q3KQV3 632 aa20.99■□□□□ 0.95
LIG1-216ENST00000598938 NSMFQ6X4W1 530 aa20.99■□□□□ 0.95
LIG1-216ENST00000598938 DPP9Q86TI2 863 aa20.99■□□□□ 0.95
LIG1-216ENST00000598938 C7orf61Q8IZ16 206 aa20.99■□□□□ 0.95
LIG1-216ENST00000598938 NPLOC4Q8TAT6 608 aa20.99■□□□□ 0.95
LIG1-216ENST00000598938 PHKBQ93100 1093 aa20.99■□□□□ 0.95
LIG1-216ENST00000598938 DDX11Q96FC9 970 aa20.99■□□□□ 0.95
LIG1-216ENST00000598938 RNF26Q9BY78 433 aaPredicted RBP20.99■□□□□ 0.95
LIG1-216ENST00000598938 OGDHLQ9ULD0 1010 aa20.99■□□□□ 0.95
LIG1-216ENST00000598938 CPLX1O14810 134 aa20.98■□□□□ 0.95
LIG1-216ENST00000598938 CD2BP2O95400 341 aaKnown RBP20.98■□□□□ 0.95
LIG1-216ENST00000598938 GHRHRQ02643 423 aa20.98■□□□□ 0.95
LIG1-216ENST00000598938 CPLX2Q6PUV4 134 aaKnown RBP20.98■□□□□ 0.95
LIG1-216ENST00000598938 NECAB1Q8N987 351 aa20.98■□□□□ 0.95
LIG1-216ENST00000598938 ZSCAN31Q96LW9 406 aaPredicted RBP20.98■□□□□ 0.95
LIG1-216ENST00000598938 C11orf49Q9H6J7 331 aa20.98■□□□□ 0.95
LIG1-216ENST00000598938 SLC5A4Q9NY91 659 aa20.98■□□□□ 0.95
LIG1-216ENST00000598938 DIS3Q9Y2L1 958 aaKnown RBP20.98■□□□□ 0.95
LIG1-216ENST00000598938 ST3GAL1Q11201 340 aa20.97■□□□□ 0.95
LIG1-216ENST00000598938 BAATQ14032 418 aaPredicted RBP20.97■□□□□ 0.95
LIG1-216ENST00000598938 PKN1Q16512 942 aa20.97■□□□□ 0.95
LIG1-216ENST00000598938 PFKFB3Q16875 520 aaPredicted RBP20.97■□□□□ 0.95
LIG1-216ENST00000598938 MAP3K21Q5TCX8 1036 aa20.97■□□□□ 0.95
LIG1-216ENST00000598938 WWC2Q6AWC2 1192 aa20.97■□□□□ 0.95
LIG1-216ENST00000598938 SLC30A10Q6XR72 485 aa20.97■□□□□ 0.95
LIG1-216ENST00000598938 MCF2L2Q86YR7 1114 aa20.97■□□□□ 0.95
LIG1-216ENST00000598938 TRMT44Q8IYL2 757 aaKnown RBP20.97■□□□□ 0.95
LIG1-216ENST00000598938 TDHQ8IZJ6 230 aa20.97■□□□□ 0.95
LIG1-216ENST00000598938 FAM133AQ8N9E0 248 aa20.97■□□□□ 0.95
LIG1-216ENST00000598938 SLC26A6Q9BXS9 759 aa20.97■□□□□ 0.95
LIG1-216ENST00000598938 SH2B1Q9NRF2 756 aaPredicted RBP20.97■□□□□ 0.95
LIG1-216ENST00000598938 ZNFX1Q9P2E3 1918 aaKnown RBP20.97■□□□□ 0.95
LIG1-216ENST00000598938 POTEB2H3BUK9 544 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 hCG_1984214I3L0E3 225 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 CDKL5O76039 1030 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 CTDNEP1O95476 244 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 IGHA2P01877 340 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 SSRP1Q08945 709 aaKnown RBP20.96■□□□□ 0.95
LIG1-216ENST00000598938 CCL14Q16627 93 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 OLFML2BQ68BL8 750 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 RNF207Q6ZRF8 634 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 HEATR3Q7Z4Q2 680 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 ZNF713Q8N859 430 aaPredicted RBP20.96■□□□□ 0.95
LIG1-216ENST00000598938 TRIB2Q92519 343 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 TBC1D5Q92609 795 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 GPKOWQ92917 476 aaPredicted RBP eCLIP20.96■□□□□ 0.95
LIG1-216ENST00000598938 MAML3Q96JK9 1138 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 FGD4Q96M96 766 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 STXBP5LQ9Y2K9 1186 aa20.96■□□□□ 0.95
LIG1-216ENST00000598938 PTPDC1A2A3K4 754 aa20.95■□□□□ 0.94
LIG1-216ENST00000598938 PPFIA3O75145 1194 aa20.95■□□□□ 0.94
LIG1-216ENST00000598938 SCG2P13521 617 aa20.95■□□□□ 0.94
LIG1-216ENST00000598938 MCM2P49736 904 aa20.95■□□□□ 0.94
LIG1-216ENST00000598938 HSD17B4P51659 736 aa20.95■□□□□ 0.94
LIG1-216ENST00000598938 RPS6P62753 249 aaKnown RBP20.95■□□□□ 0.94
LIG1-216ENST00000598938 AKAP17AQ02040 695 aaKnown RBP20.95■□□□□ 0.94
LIG1-216ENST00000598938 CNTN2Q02246 1040 aa20.95■□□□□ 0.94
LIG1-216ENST00000598938 PPP1R18Q6NYC8 613 aa20.95■□□□□ 0.94
LIG1-216ENST00000598938 TRIM22Q8IYM9 498 aa20.95■□□□□ 0.94
LIG1-216ENST00000598938 DEFB123Q8N688 67 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms