RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	MFSD6	Q6ZSS7	791 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	ZNF365	Q70YC5	407 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	SMC5	Q8IY18	1101 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	TMEM199	Q8N511	208 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	TIFA	Q96CG3	184 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	YTHDC1	Q96MU7	727 aa	Known RBP	12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	ZKSCAN3	Q9BRR0	538 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	CPVL	Q9H3G5	476 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	HIPK3	Q9H422	1215 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	CHD9	Q3L8U1	2897 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	ZEB2	O60315	1214 aa		12.38	□□□□□ -0.43
LSM4-205	ENST00000597776	B4GALT4	O60513	344 aa		12.38	□□□□□ -0.43
LSM4-205	ENST00000597776	IGHD	P01880	384 aa		12.38	□□□□□ -0.43
LSM4-205	ENST00000597776	GOLGA8H	P0CJ92	632 aa		12.38	□□□□□ -0.43
LSM4-205	ENST00000597776	RASIP1	Q5U651	963 aa		12.38	□□□□□ -0.43
LSM4-205	ENST00000597776	CHD1L	Q86WJ1	897 aa		12.38	□□□□□ -0.43
LSM4-205	ENST00000597776	PLEKHM2	Q8IWE5	1019 aa		12.38	□□□□□ -0.43
LSM4-205	ENST00000597776	WDR11	Q9BZH6	1224 aa		12.38	□□□□□ -0.43
LSM4-205	ENST00000597776	IL23A	Q9NPF7	189 aa		12.38	□□□□□ -0.43
LSM4-205	ENST00000597776	ADD3	Q9UEY8	706 aa	Known RBP	12.38	□□□□□ -0.43
LSM4-205	ENST00000597776	SPTBN5	Q9NRC6	3674 aa	Known RBP	12.38	□□□□□ -0.43
LSM4-205	ENST00000597776	SNHG28	P0DPA3	235 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	PC	P11498	1178 aa	Known RBP	12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	CCL23	P55773	120 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	RPS6	P62753	249 aa	Known RBP	12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	USH1G	Q495M9	461 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	DUSP28	Q4G0W2	176 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	PSRC1	Q6PGN9	363 aa	Predicted RBP	12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	RNF207	Q6ZRF8	634 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	TICAM2	Q86XR7	235 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	PPP1R13L	Q8WUF5	828 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	TTC14	Q96N46	770 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	NOC4L	Q9BVI4	516 aa	Known RBP	12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	PBX4	Q9BYU1	374 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	WNT8A	Q9H1J5	351 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	ZNF576	Q9H609	170 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	CXXC1	Q9P0U4	656 aa	Predicted RBP	12.37	□□□□□ -0.43
LSM4-205	ENST00000597776		Q9Y3F1	56 aa		12.37	□□□□□ -0.43
LSM4-205	ENST00000597776	ZNF213	O14771	459 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	MYL3	P08590	195 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	MFAP1	P55081	439 aa	Known RBP	12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	NUCB1	Q02818	461 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	PDE4D	Q08499	809 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	CWC27	Q6UX04	472 aa	Known RBP	12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	OTOP2	Q7RTS6	562 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	USP38	Q8NB14	1042 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	OR6J1	Q8NGC5	347 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	HERVK_113	Q902F9	699 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	ESR2	Q92731	530 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	UBA5	Q9GZZ9	404 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	RWDD1	Q9H446	243 aa	Predicted RBP	12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	RNF41	Q9H4P4	317 aa	Predicted RBP	12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	DIAPH3	Q9NSV4	1193 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	TRMT13	Q9NUP7	481 aa	Known RBP	12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	LAMA4	Q16363	1823 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	WDR19	Q8NEZ3	1342 aa		12.36	□□□□□ -0.43
LSM4-205	ENST00000597776	RBM47	A0AV96	593 aa	Known RBP	12.35	□□□□□ -0.43
LSM4-205	ENST00000597776		B4E1Z4	1266 aa		12.35	□□□□□ -0.43
LSM4-205	ENST00000597776	KDM4A	O75164	1064 aa		12.35	□□□□□ -0.43
LSM4-205	ENST00000597776	CYP2C9	P11712	490 aa		12.35	□□□□□ -0.43
LSM4-205	ENST00000597776	EDNRB	P24530	442 aa		12.35	□□□□□ -0.43
LSM4-205	ENST00000597776	PURA	Q00577	322 aa	Known RBP	12.35	□□□□□ -0.43
LSM4-205	ENST00000597776	PNMA1	Q8ND90	353 aa		12.35	□□□□□ -0.43
LSM4-205	ENST00000597776	EXOC6	Q8TAG9	804 aa		12.35	□□□□□ -0.43
LSM4-205	ENST00000597776	COPS5	Q92905	334 aa		12.35	□□□□□ -0.43
LSM4-205	ENST00000597776	SCLY	Q96I15	445 aa		12.35	□□□□□ -0.43
LSM4-205	ENST00000597776	OSBPL3	Q9H4L5	887 aa		12.35	□□□□□ -0.43
LSM4-205	ENST00000597776	CHD7	Q9P2D1	2997 aa		12.35	□□□□□ -0.43
LSM4-205	ENST00000597776	LOC102724159	A0A0B4J2E5	919 aa		12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	FGB	P02675	491 aa		12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	CPT1A	P50416	773 aa		12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	AAMP	Q13685	434 aa		12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	PPP2R5B	Q15173	497 aa		12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	PWP2	Q15269	919 aa	Known RBP	12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	CDC37	Q16543	378 aa	Predicted RBP	12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	GPATCH4	Q5T3I0	446 aa	Known RBP	12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	VWCE	Q96DN2	955 aa		12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	PRDM12	Q9H4Q4	367 aa		12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	POLR3E	Q9NVU0	708 aa		12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	PNMA2	Q9UL42	364 aa		12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	TNKS	O95271	1327 aa		12.34	□□□□□ -0.43
LSM4-205	ENST00000597776	ARIH2	O95376	493 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	RABGGTB	P53611	331 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	NBPF20	Q3BBV1	942 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	FAM47C	Q5HY64	1035 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	IQCA1	Q86XH1	822 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	DGKH	Q86XP1	1220 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	ADGRF4	Q8IZF3	695 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	ENAH	Q8N8S7	591 aa	Predicted RBP	12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	DNER	Q8NFT8	737 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	SCFD2	Q8WU76	684 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	TBC1D5	Q92609	795 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	MTG1	Q9BT17	334 aa	Predicted RBP	12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	SEZ6L	Q9BYH1	1024 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	IL25	Q9H293	177 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	MTIF3	Q9H2K0	278 aa	Known RBP	12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	NKX2-4	Q9H2Z4	354 aa		12.33	□□□□□ -0.44
LSM4-205	ENST00000597776	KAT14	Q9H8E8	782 aa		12.33	□□□□□ -0.44

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