RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 COL25A1Q9BXS0 654 aaPredicted RBP28.14■■■□□ 2.1
LSM4-202ENST00000593564 RNF41Q9H4P4 317 aaPredicted RBP28.14■■■□□ 2.1
LSM4-202ENST00000593564 GRIN2DO15399 1336 aa28.14■■■□□ 2.09
LSM4-202ENST00000593564 CYP2C18P33260 490 aa28.13■■■□□ 2.09
LSM4-202ENST00000593564 DUSP28Q4G0W2 176 aa28.13■■■□□ 2.09
LSM4-202ENST00000593564 CLEC4DQ8WXI8 215 aa28.13■■■□□ 2.09
LSM4-202ENST00000593564 PTPDC1A2A3K4 754 aa28.12■■■□□ 2.09
LSM4-202ENST00000593564 ZNF365Q70YC5 407 aa28.12■■■□□ 2.09
LSM4-202ENST00000593564 TIFAQ96CG3 184 aa28.12■■■□□ 2.09
LSM4-202ENST00000593564 HIPK3Q9H422 1215 aa28.12■■■□□ 2.09
LSM4-202ENST00000593564 RWDD1Q9H446 243 aaPredicted RBP28.12■■■□□ 2.09
LSM4-202ENST00000593564 IL23AQ9NPF7 189 aa28.12■■■□□ 2.09
LSM4-202ENST00000593564 WDR19Q8NEZ3 1342 aa28.12■■■□□ 2.09
LSM4-202ENST00000593564 ACRP10323 421 aa28.11■■■□□ 2.09
LSM4-202ENST00000593564 SDSP20132 328 aa28.11■■■□□ 2.09
LSM4-202ENST00000593564 GRIN2CQ14957 1233 aa28.11■■■□□ 2.09
LSM4-202ENST00000593564 SLC30A10Q6XR72 485 aa28.11■■■□□ 2.09
LSM4-202ENST00000593564 ZNF576Q9H609 170 aa28.11■■■□□ 2.09
LSM4-202ENST00000593564 VCANP13611 3396 aa28.11■■■□□ 2.09
LSM4-202ENST00000593564 RBM47A0AV96 593 aaKnown RBP28.1■■■□□ 2.09
LSM4-202ENST00000593564 NT5C2P49902 561 aa28.1■■■□□ 2.09
LSM4-202ENST00000593564 RNF207Q6ZRF8 634 aa28.1■■■□□ 2.09
LSM4-202ENST00000593564 ESR2Q92731 530 aa28.1■■■□□ 2.09
LSM4-202ENST00000593564 WDR11Q9BZH6 1224 aa28.1■■■□□ 2.09
LSM4-202ENST00000593564 OSBPL3Q9H4L5 887 aa28.1■■■□□ 2.09
LSM4-202ENST00000593564 NEDD4P46934 1319 aa28.1■■■□□ 2.09
LSM4-202ENST00000593564 CALML3P27482 149 aa28.09■■■□□ 2.09
LSM4-202ENST00000593564 PSMC6P62333 389 aa28.09■■■□□ 2.09
LSM4-202ENST00000593564 B4GALNT3Q6L9W6 998 aa28.09■■■□□ 2.09
LSM4-202ENST00000593564 CHD1LQ86WJ1 897 aa28.09■■■□□ 2.09
LSM4-202ENST00000593564 PLEKHM2Q8IWE5 1019 aa28.09■■■□□ 2.09
LSM4-202ENST00000593564 HERVK_113Q902F9 699 aa28.09■■■□□ 2.09
LSM4-202ENST00000593564 NOC4LQ9BVI4 516 aaKnown RBP28.09■■■□□ 2.09
LSM4-202ENST00000593564 TRPV6Q9H1D0 765 aa28.09■■■□□ 2.09
LSM4-202ENST00000593564 B4GALT4O60513 344 aa28.08■■■□□ 2.09
LSM4-202ENST00000593564 RPS6P62753 249 aaKnown RBP28.08■■■□□ 2.09
LSM4-202ENST00000593564 GPATCH4Q5T3I0 446 aaKnown RBP28.08■■■□□ 2.09
LSM4-202ENST00000593564 DGKHQ86XP1 1220 aa28.08■■■□□ 2.09
LSM4-202ENST00000593564 PBX4Q9BYU1 374 aa28.08■■■□□ 2.09
LSM4-202ENST00000593564 UMODL1Q5DID0 1318 aa28.08■■■□□ 2.09
LSM4-202ENST00000593564 GRXCR1A8MXD5 290 aa28.07■■■□□ 2.08
LSM4-202ENST00000593564 ZNF213O14771 459 aa28.07■■■□□ 2.08
LSM4-202ENST00000593564 EDNRBP24530 442 aa28.07■■■□□ 2.08
LSM4-202ENST00000593564 CPT1AP50416 773 aa28.07■■■□□ 2.08
LSM4-202ENST00000593564 NUCB1Q02818 461 aa28.07■■■□□ 2.08
LSM4-202ENST00000593564 MPHOSPH6Q99547 160 aaKnown RBP28.07■■■□□ 2.08
LSM4-202ENST00000593564 MTIF3Q9H2K0 278 aaKnown RBP28.07■■■□□ 2.08
LSM4-202ENST00000593564 POLR3EQ9NVU0 708 aa28.07■■■□□ 2.08
LSM4-202ENST00000593564 PBX2P40425 430 aa28.06■■■□□ 2.08
LSM4-202ENST00000593564 DNERQ8NFT8 737 aa28.06■■■□□ 2.08
LSM4-202ENST00000593564 ALDH8A1Q9H2A2 487 aaPredicted RBP28.06■■■□□ 2.08
LSM4-202ENST00000593564 FGBP02675 491 aa28.05■■■□□ 2.08
LSM4-202ENST00000593564 PURAQ00577 322 aaKnown RBP28.05■■■□□ 2.08
LSM4-202ENST00000593564 PDE4DQ08499 809 aa28.05■■■□□ 2.08
LSM4-202ENST00000593564 CCDC178Q5BJE1 867 aa28.05■■■□□ 2.08
LSM4-202ENST00000593564 RGS22Q8NE09 1264 aa28.05■■■□□ 2.08
LSM4-202ENST00000593564 ZKSCAN3Q9BRR0 538 aa28.05■■■□□ 2.08
LSM4-202ENST00000593564 NKRFO15226 690 aaKnown RBP eCLIP28.04■■■□□ 2.08
LSM4-202ENST00000593564 IGHDP01880 384 aa28.04■■■□□ 2.08
LSM4-202ENST00000593564 GOLGA8HP0CJ92 632 aa28.04■■■□□ 2.08
LSM4-202ENST00000593564 CCL23P55773 120 aa28.04■■■□□ 2.08
LSM4-202ENST00000593564 CWC27Q6UX04 472 aaKnown RBP28.04■■■□□ 2.08
LSM4-202ENST00000593564 IQCA1Q86XH1 822 aa28.04■■■□□ 2.08
LSM4-202ENST00000593564 OR6J1Q8NGC5 347 aa28.04■■■□□ 2.08
LSM4-202ENST00000593564 SCFD2Q8WU76 684 aa28.04■■■□□ 2.08
LSM4-202ENST00000593564 WNT8AQ9H1J5 351 aa28.04■■■□□ 2.08
LSM4-202ENST00000593564 DIAPH3Q9NSV4 1193 aa28.04■■■□□ 2.08
LSM4-202ENST00000593564 CXXC1Q9P0U4 656 aaPredicted RBP28.04■■■□□ 2.08
LSM4-202ENST00000593564 PPP2R5BQ15173 497 aa28.03■■■□□ 2.08
LSM4-202ENST00000593564 PNMA1Q8ND90 353 aa28.03■■■□□ 2.08
LSM4-202ENST00000593564 ANKS1AQ92625 1134 aa28.03■■■□□ 2.08
LSM4-202ENST00000593564 CHD9Q3L8U1 2897 aa28.02■■■□□ 2.08
LSM4-202ENST00000593564 RAD50Q92878 1312 aa28.02■■■□□ 2.08
LSM4-202ENST00000593564 B4DLN1 442 aa28.02■■■□□ 2.08
LSM4-202ENST00000593564 HIP1O00291 1037 aa28.02■■■□□ 2.08
LSM4-202ENST00000593564 KDM4AO75164 1064 aa28.02■■■□□ 2.08
LSM4-202ENST00000593564 MYL3P08590 195 aa28.02■■■□□ 2.08
LSM4-202ENST00000593564 SUPT20HL2P0C7V6 817 aa28.02■■■□□ 2.08
LSM4-202ENST00000593564 MRPL12P52815 198 aaKnown RBP28.02■■■□□ 2.08
LSM4-202ENST00000593564 RAB30Q15771 203 aa28.02■■■□□ 2.08
LSM4-202ENST00000593564 USH1GQ495M9 461 aa28.02■■■□□ 2.08
LSM4-202ENST00000593564 BRDTQ58F21 947 aaPredicted RBP28.02■■■□□ 2.08
LSM4-202ENST00000593564 MTG1Q9BT17 334 aaPredicted RBP28.02■■■□□ 2.08
LSM4-202ENST00000593564 UBA5Q9GZZ9 404 aa28.02■■■□□ 2.08
LSM4-202ENST00000593564 MAF1Q9H063 256 aa28.02■■■□□ 2.08
LSM4-202ENST00000593564 GPHNQ9NQX3 736 aaPredicted RBP28.02■■■□□ 2.08
LSM4-202ENST00000593564 RPUSD2Q8IZ73 545 aaKnown RBP28.01■■■□□ 2.07
LSM4-202ENST00000593564 DSCC1Q9BVC3 393 aa28.01■■■□□ 2.07
LSM4-202ENST00000593564 CPVLQ9H3G5 476 aa28.01■■■□□ 2.07
LSM4-202ENST00000593564 TRMT13Q9NUP7 481 aaKnown RBP28.01■■■□□ 2.07
LSM4-202ENST00000593564 MSRAQ9UJ68 235 aa28.01■■■□□ 2.07
LSM4-202ENST00000593564 LAMA4Q16363 1823 aa28.01■■■□□ 2.07
LSM4-202ENST00000593564 TNKSO95271 1327 aa28■■■□□ 2.07
LSM4-202ENST00000593564 A6NJR5 290 aa28■■■□□ 2.07
LSM4-202ENST00000593564 CDC37Q16543 378 aaPredicted RBP28■■■□□ 2.07
LSM4-202ENST00000593564 OTOP2Q7RTS6 562 aa28■■■□□ 2.07
LSM4-202ENST00000593564 ZSCAN10Q96SZ4 725 aaPredicted RBP28■■■□□ 2.07
LSM4-202ENST00000593564 KAT14Q9H8E8 782 aa28■■■□□ 2.07
LSM4-202ENST00000593564 SPTBN5Q9NRC6 3674 aaKnown RBP28■■■□□ 2.07
LSM4-202ENST00000593564 ABCB11O95342 1321 aa27.99■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms