RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 TYW1BQ6NUM6 668 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 RRAGAQ7L523 313 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 CEP57Q86XR8 500 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 WDR66Q8TBY9 1149 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 CTNNBL1Q8WYA6 563 aaPredicted RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 MAP3K14Q99558 947 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 BLZF1Q9H2G9 400 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 SEPT11Q9NVA2 429 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 FAM53CQ9NYF3 392 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 PCDHB8Q9UN66 801 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 HPS5Q9UPZ3 1129 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 PCDHB13Q9Y5F0 798 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 PCDHA13Q9Y5I0 950 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 UBR1Q8IWV7 1749 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 PEAK1Q9H792 1746 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 BUB1BO60566 1050 aaPredicted RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 DTNBO60941 627 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 KRT13P13646 458 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 ADORA1P30542 326 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 RASSF2P50749 326 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 C6orf163Q5TEZ5 329 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 TCERG1LQ5VWI1 586 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 CCNI2Q6ZMN8 369 aaPredicted RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 TMTC3Q6ZXV5 915 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 HS2ST1Q7LGA3 356 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 ZNF804AQ7Z570 1209 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 NEK8Q86SG6 692 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 REXO1Q8N1G1 1221 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 MIGA1Q8NAN2 632 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 IGDCC4Q8TDY8 1250 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 FBF1Q8TES7 1133 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 RAB3IPQ96QF0 476 aaPredicted RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 VEZTQ9HBM0 779 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 MCM9Q9NXL9 1143 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 AMFRQ9UKV5 643 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 HPCAL4Q9UM19 191 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 STX8Q9UNK0 236 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 MRC1P22897 1456 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 RIMS1Q86UR5 1692 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 SOS2Q07890 1332 aaPredicted RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 ATXN2Q99700 1313 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 ARHGAP23Q9P227 1491 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 A0A087WWV3 80 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 SSU72P8A0A1W2PR75 194 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 ATP2A1O14983 1001 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 EIF3HO15372 352 aaKnown RBP eCLIP3.89□□□□□ -1.79
VMP1-216ENST00000592790 CCNT1O60563 726 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 HEXIM1O94992 359 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 HLA-DOAP06340 250 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 GCFC2P16383 781 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 GUCY2CP25092 1073 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 MAN1A1P33908 653 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 IL6STP40189 918 aaPredicted RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 SARSP49591 514 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 FKBP3Q00688 224 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 PDIA6Q15084 440 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 CALCRLQ16602 461 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 LETM2Q2VYF4 491 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 CDKAL1Q5VV42 579 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 PAPD7Q5XG87 772 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 DENND2CQ68D51 928 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 PPP4R3AQ6IN85 833 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 TRAPPC11Q7Z392 1133 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 PEX26Q7Z412 305 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 DGKHQ86XP1 1220 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 TBC1D10CQ8IV04 446 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 SUGP1Q8IWZ8 645 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 LMNTD2Q8IXW0 634 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 KIFC2Q96AC6 838 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 KAZALD1Q96I82 304 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 CEP63Q96MT8 703 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 NLRP3Q96P20 1036 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 CCSER1Q9C0I3 900 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 CCDC113Q9H0I3 377 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 NKIRAS1Q9NYS0 192 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 SNX12Q9UMY4 172 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 PDS5AQ29RF7 1337 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 GSTTP1A0A1W2PQM5 241 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 VGLL3A8MV65 326 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 B4DLN1 442 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 PGRMC1O00264 195 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 LDHBP07195 334 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 SRGNP10124 158 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 CDC27P30260 824 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 GGCXP38435 758 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 MCAMP43121 646 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 ADCY7P51828 1080 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 KIF11P52732 1056 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 CLNS1AP54105 237 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 ANTXR2P58335 489 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 LMNB2Q03252 620 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 GOLGA8FQ08AF8 430 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 GOLGA8DPQ0D2H9 430 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 IKQ13123 557 aaPredicted RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 PRPF4BQ13523 1007 aaKnown RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 PFKFB3Q16875 520 aaPredicted RBP3.89□□□□□ -1.79
VMP1-216ENST00000592790 KRT71Q3SY84 523 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 NCAPH2Q6IBW4 605 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 CYB5R4Q7L1T6 521 aa3.89□□□□□ -1.79
VMP1-216ENST00000592790 EIF1ADQ8N9N8 165 aaKnown RBP3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms