RNA–Protein interactions for RNA: ENST00000588483.1

TPM4-209, Transcript of tropomyosin 4, humanhuman

TSL 5

Gene TPM4, Length 801 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-209ENST00000588483 ZNF654Q8IZM8 581 aa12.21□□□□□ -0.45
TPM4-209ENST00000588483 LENG1Q96BZ8 264 aaPredicted RBP12.21□□□□□ -0.45
TPM4-209ENST00000588483 SPZ1Q9BXG8 430 aa12.21□□□□□ -0.45
TPM4-209ENST00000588483 AMNQ9BXJ7 453 aa12.21□□□□□ -0.45
TPM4-209ENST00000588483 SENP6Q9GZR1 1112 aaPredicted RBP12.21□□□□□ -0.45
TPM4-209ENST00000588483 MAP3K20Q9NYL2 800 aaKnown RBP12.21□□□□□ -0.45
TPM4-209ENST00000588483 MRPL11Q9Y3B7 192 aaKnown RBP12.21□□□□□ -0.45
TPM4-209ENST00000588483 Q9Y3F1 56 aa12.21□□□□□ -0.45
TPM4-209ENST00000588483 OPLAHO14841 1288 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 CTAGE5O15320 804 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 PPP1R11O60927 126 aaPredicted RBP12.2□□□□□ -0.46
TPM4-209ENST00000588483 PGK1P00558 417 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 CALM1P0DP23 149 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 CALM2P0DP24 149 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 CALM3P0DP25 149 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 KIF5BP33176 963 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 HSD17B4P51659 736 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 EXOSC10Q01780 885 aaKnown RBP12.2□□□□□ -0.46
TPM4-209ENST00000588483 IQSEC1Q6DN90 963 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 SLC39A5Q6ZMH5 540 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 C7orf61Q8IZ16 206 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 RASEFQ8IZ41 740 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 PURBQ96QR8 312 aaKnown RBP12.2□□□□□ -0.46
TPM4-209ENST00000588483 SZT2Q5T011 3432 aa12.2□□□□□ -0.46
TPM4-209ENST00000588483 PNMA6FA0A0J9YX94 578 aa12.19□□□□□ -0.46
TPM4-209ENST00000588483 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 A0A1W2PPC1 479 aa12.19□□□□□ -0.46
TPM4-209ENST00000588483 A0A1W2PQ45 241 aaPredicted RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 A0A1W2PQY0 241 aa12.19□□□□□ -0.46
TPM4-209ENST00000588483 B4DLN1 442 aa12.19□□□□□ -0.46
TPM4-209ENST00000588483 DHX16O60231 1041 aaKnown RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 HMGB1P09429 215 aaKnown RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 CALML3P27482 149 aa12.19□□□□□ -0.46
TPM4-209ENST00000588483 HSPA4P34932 840 aa12.19□□□□□ -0.46
TPM4-209ENST00000588483 ADCYAP1R1P41586 468 aa12.19□□□□□ -0.46
TPM4-209ENST00000588483 MRPL12P52815 198 aaKnown RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 HABP4Q5JVS0 413 aaKnown RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 FBXO16Q8IX29 292 aaPredicted RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 FBXL16Q8N461 479 aa12.19□□□□□ -0.46
TPM4-209ENST00000588483 PCSK9Q8NBP7 692 aaKnown RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 CTCFLQ8NI51 663 aaPredicted RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 SYTL5Q8TDW5 730 aaPredicted RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 NEK1Q96PY6 1258 aa12.19□□□□□ -0.46
TPM4-209ENST00000588483 MPHOSPH6Q99547 160 aaKnown RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 LZTS2Q9BRK4 669 aa12.19□□□□□ -0.46
TPM4-209ENST00000588483 SPC25Q9HBM1 224 aa12.19□□□□□ -0.46
TPM4-209ENST00000588483 GPHNQ9NQX3 736 aaPredicted RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 COLQQ9Y215 455 aaPredicted RBP12.19□□□□□ -0.46
TPM4-209ENST00000588483 LTBP2Q14767 1821 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 MYADML2A6NDP7 307 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 CCDC69A6NI79 296 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 REC8O95072 547 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 SMPD1P17405 629 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 BMP8BP34820 402 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 GNAQP50148 359 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 ACLYP53396 1101 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 RCAN1P53805 252 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 RTP1P59025 263 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 TNFAIP2Q03169 654 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 ADCK5Q3MIX3 580 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 DUSP28Q4G0W2 176 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 DHX32Q7L7V1 743 aaKnown RBP12.18□□□□□ -0.46
TPM4-209ENST00000588483 NUP133Q8WUM0 1156 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 TBC1D5Q92609 795 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 PIGSQ96S52 555 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 IWS1Q96ST2 819 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 GDF15Q99988 308 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 VAT1LQ9HCJ6 419 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 COL20A1Q9P218 1284 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 PCDHA1Q9Y5I3 950 aa12.18□□□□□ -0.46
TPM4-209ENST00000588483 KIAA1217Q5T5P2 1943 aa12.17□□□□□ -0.46
TPM4-209ENST00000588483 ELP1O95163 1332 aa12.17□□□□□ -0.46
TPM4-209ENST00000588483 LAMA2P24043 3122 aaKnown RBP12.17□□□□□ -0.46
TPM4-209ENST00000588483 KCNA10Q16322 511 aa12.17□□□□□ -0.46
TPM4-209ENST00000588483 CHRDL2Q6WN34 429 aa12.17□□□□□ -0.46
TPM4-209ENST00000588483 ANKRD33Q7Z3H0 272 aa12.17□□□□□ -0.46
TPM4-209ENST00000588483 TLK2Q86UE8 772 aa12.17□□□□□ -0.46
TPM4-209ENST00000588483 NSUN6Q8TEA1 469 aaKnown RBP12.17□□□□□ -0.46
TPM4-209ENST00000588483 TOX2Q96NM4 488 aa12.17□□□□□ -0.46
TPM4-209ENST00000588483 PDGFCQ9NRA1 345 aa12.17□□□□□ -0.46
TPM4-209ENST00000588483 SLC12A7Q9Y666 1083 aa12.17□□□□□ -0.46
TPM4-209ENST00000588483 DDX49Q9Y6V7 483 aaKnown RBP12.17□□□□□ -0.46
TPM4-209ENST00000588483 NKRFO15226 690 aaKnown RBP eCLIP12.16□□□□□ -0.46
TPM4-209ENST00000588483 ASGR1P07306 291 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 C6orf222P0C671 652 aaPredicted RBP12.16□□□□□ -0.46
TPM4-209ENST00000588483 ATN1P54259 1190 aaPredicted RBP12.16□□□□□ -0.46
TPM4-209ENST00000588483 PDE4DQ08499 809 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 APOA5Q6Q788 366 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 NFXL1Q6ZNB6 911 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 TMTC3Q6ZXV5 915 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 EEPD1Q7L9B9 569 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 HOMER1Q86YM7 354 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 SRBD1Q8N5C6 995 aaKnown RBP12.16□□□□□ -0.46
TPM4-209ENST00000588483 FANCBQ8NB91 859 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 SCFD2Q8WU76 684 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 TAAR1Q96RJ0 339 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 MYL10Q9BUA6 226 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 SEZ6LQ9BYH1 1024 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 LRRC2Q9BYS8 371 aa12.16□□□□□ -0.46
TPM4-209ENST00000588483 AGXT2Q9BYV1 514 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms