RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 SNHG28P0DPA3 235 aa13.98□□□□□ -0.17
LIG3-209ENST00000586435 HSPD1P10809 573 aaKnown RBP13.98□□□□□ -0.17
LIG3-209ENST00000586435 PDHBP11177 359 aa13.98□□□□□ -0.17
LIG3-209ENST00000586435 PTGS1P23219 599 aa13.98□□□□□ -0.17
LIG3-209ENST00000586435 SLC16A2P36021 539 aa13.98□□□□□ -0.17
LIG3-209ENST00000586435 PBX2P40425 430 aa13.98□□□□□ -0.17
LIG3-209ENST00000586435 NT5C2P49902 561 aa13.98□□□□□ -0.17
LIG3-209ENST00000586435 BAATQ14032 418 aaPredicted RBP13.98□□□□□ -0.17
LIG3-209ENST00000586435 KIAA1211Q6ZU35 1233 aa13.98□□□□□ -0.17
LIG3-209ENST00000586435 SYMPKQ92797 1274 aaKnown RBP13.98□□□□□ -0.17
LIG3-209ENST00000586435 PURBQ96QR8 312 aaKnown RBP13.98□□□□□ -0.17
LIG3-209ENST00000586435 TOMM22Q9NS69 142 aa13.98□□□□□ -0.17
LIG3-209ENST00000586435 POLR3EQ9NVU0 708 aa13.98□□□□□ -0.17
LIG3-209ENST00000586435 UMODL1Q5DID0 1318 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 FRMPD2Q68DX3 1309 aaPredicted RBP13.97□□□□□ -0.17
LIG3-209ENST00000586435 CCDC171Q6TFL3 1326 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 SCN5AQ14524 2016 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 GRXCR1A8MXD5 290 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 FGBP02675 491 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 PSMC6P62333 389 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 ZNF543Q08ER8 600 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 RRP12Q5JTH9 1297 aaKnown RBP13.97□□□□□ -0.17
LIG3-209ENST00000586435 AKNAD1Q5T1N1 836 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 TMEM63BQ5T3F8 832 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 ZNF589Q86UQ0 364 aaPredicted RBP13.97□□□□□ -0.17
LIG3-209ENST00000586435 USP38Q8NB14 1042 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 CLEC4DQ8WXI8 215 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 GAS2L1Q99501 681 aaPredicted RBP13.97□□□□□ -0.17
LIG3-209ENST00000586435 WDR11Q9BZH6 1224 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 WNT8AQ9H1J5 351 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 ALDH8A1Q9H2A2 487 aaPredicted RBP13.97□□□□□ -0.17
LIG3-209ENST00000586435 CXXC1Q9P0U4 656 aaPredicted RBP13.97□□□□□ -0.17
LIG3-209ENST00000586435 MSRAQ9UJ68 235 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 KIAA1217Q5T5P2 1943 aa13.97□□□□□ -0.17
LIG3-209ENST00000586435 PTPDC1A2A3K4 754 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 NKRFO15226 690 aaKnown RBP eCLIP13.96□□□□□ -0.17
LIG3-209ENST00000586435 PFKMP08237 780 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 SUPT20HL2P0C7V6 817 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 EDNRBP24530 442 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 CPT1AP50416 773 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 PURAQ00577 322 aaKnown RBP13.96□□□□□ -0.17
LIG3-209ENST00000586435 NMIQ13287 307 aaPredicted RBP13.96□□□□□ -0.17
LIG3-209ENST00000586435 SLC30A10Q6XR72 485 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 RNF207Q6ZRF8 634 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 RPUSD2Q8IZ73 545 aaKnown RBP13.96□□□□□ -0.17
LIG3-209ENST00000586435 DNERQ8NFT8 737 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 CRBNQ96SW2 442 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 MPHOSPH6Q99547 160 aaKnown RBP13.96□□□□□ -0.17
LIG3-209ENST00000586435 MAF1Q9H063 256 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 TRPV6Q9H1D0 765 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 RNF41Q9H4P4 317 aaPredicted RBP13.96□□□□□ -0.17
LIG3-209ENST00000586435 GPCPD1Q9NPB8 672 aa13.96□□□□□ -0.17
LIG3-209ENST00000586435 NCOR1O75376 2440 aa13.95□□□□□ -0.18
LIG3-209ENST00000586435 RAD50Q92878 1312 aa13.95□□□□□ -0.18
LIG3-209ENST00000586435 MFAP1P55081 439 aaKnown RBP13.95□□□□□ -0.18
LIG3-209ENST00000586435 CCL23P55773 120 aa13.95□□□□□ -0.18
LIG3-209ENST00000586435 RPS6P62753 249 aaKnown RBP13.95□□□□□ -0.18
LIG3-209ENST00000586435 AAMPQ13685 434 aa13.95□□□□□ -0.18
LIG3-209ENST00000586435 TJAP1Q5JTD0 557 aa13.95□□□□□ -0.18
LIG3-209ENST00000586435 GPATCH4Q5T3I0 446 aaKnown RBP13.95□□□□□ -0.18
LIG3-209ENST00000586435 MFSD6Q6ZSS7 791 aa13.95□□□□□ -0.18
LIG3-209ENST00000586435 TBC1D10CQ8IV04 446 aa13.95□□□□□ -0.18
LIG3-209ENST00000586435 PRDM12Q9H4Q4 367 aa13.95□□□□□ -0.18
LIG3-209ENST00000586435 TNKSO95271 1327 aa13.94□□□□□ -0.18
LIG3-209ENST00000586435 CALML3P27482 149 aa13.94□□□□□ -0.18
LIG3-209ENST00000586435 HAND2P61296 217 aa13.94□□□□□ -0.18
LIG3-209ENST00000586435 PDE4DQ08499 809 aa13.94□□□□□ -0.18
LIG3-209ENST00000586435 PPP2R5BQ15173 497 aa13.94□□□□□ -0.18
LIG3-209ENST00000586435 BRDTQ58F21 947 aaPredicted RBP13.94□□□□□ -0.18
LIG3-209ENST00000586435 OTOP2Q7RTS6 562 aa13.94□□□□□ -0.18
LIG3-209ENST00000586435 DGKHQ86XP1 1220 aa13.94□□□□□ -0.18
LIG3-209ENST00000586435 RGS22Q8NE09 1264 aa13.94□□□□□ -0.18
LIG3-209ENST00000586435 OR6J1Q8NGC5 347 aa13.94□□□□□ -0.18
LIG3-209ENST00000586435 SCFD2Q8WU76 684 aa13.94□□□□□ -0.18
LIG3-209ENST00000586435 VWCEQ96DN2 955 aa13.94□□□□□ -0.18
LIG3-209ENST00000586435 MTG1Q9BT17 334 aaPredicted RBP13.94□□□□□ -0.18
LIG3-209ENST00000586435 TRIP12Q14669 1992 aaPredicted RBP13.94□□□□□ -0.18
LIG3-209ENST00000586435 CHD9Q3L8U1 2897 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 A6NJR5 290 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 B4DLN1 442 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 KPNA6O60684 536 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 MRPL12P52815 198 aaKnown RBP13.93□□□□□ -0.18
LIG3-209ENST00000586435 NFRKBQ6P4R8 1299 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 SMC5Q8IY18 1101 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 ESR2Q92731 530 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 NKX2-4Q9H2Z4 354 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 SLC28A3Q9HAS3 691 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 GPHNQ9NQX3 736 aaPredicted RBP13.93□□□□□ -0.18
LIG3-209ENST00000586435 TRMT13Q9NUP7 481 aaKnown RBP13.93□□□□□ -0.18
LIG3-209ENST00000586435 YBX2Q9Y2T7 364 aaKnown RBP13.93□□□□□ -0.18
LIG3-209ENST00000586435 PCDHA11Q9Y5I1 949 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 SLC4A7Q9Y6M7 1214 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 TET1Q8NFU7 2136 aa13.93□□□□□ -0.18
LIG3-209ENST00000586435 NEDD4P46934 1319 aa13.92□□□□□ -0.18
LIG3-209ENST00000586435 TRIM6-TRIM34B2RNG4 842 aa13.92□□□□□ -0.18
LIG3-209ENST00000586435 PITPNM1O00562 1244 aa13.92□□□□□ -0.18
LIG3-209ENST00000586435 MYL3P08590 195 aa13.92□□□□□ -0.18
LIG3-209ENST00000586435 RFC2P35250 354 aa13.92□□□□□ -0.18
LIG3-209ENST00000586435 PTPN11Q06124 597 aaPredicted RBP13.92□□□□□ -0.18
LIG3-209ENST00000586435 ADGRE1Q14246 886 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms