RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 FAM161BQ96MY7 647 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 KRTAP4-8Q9BYQ9 185 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 GGT7Q9UJ14 662 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 SF3B6Q9Y3B4 125 aaKnown RBP2.58□□□□□ -2
SMCHD1-211ENST00000584897 TAF6LQ9Y6J9 622 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 METTL12A8MUP2 240 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 GLDCP23378 1020 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 TPP2P29144 1249 aaPredicted RBP2.58□□□□□ -2
SMCHD1-211ENST00000584897 LIG3P49916 1009 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 RACK1P63244 317 aaKnown RBP2.58□□□□□ -2
SMCHD1-211ENST00000584897 COL9A2Q14055 689 aaPredicted RBP2.58□□□□□ -2
SMCHD1-211ENST00000584897 RNF187Q5TA31 235 aaPredicted RBP2.58□□□□□ -2
SMCHD1-211ENST00000584897 FAM124AQ86V42 546 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 AFAP1Q8N556 730 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 UBE2FQ969M7 185 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 HHIPQ96QV1 700 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 TMEM59LQ9UK28 342 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 RNASE1P07998 156 aaKnown RBP2.58□□□□□ -2
SMCHD1-211ENST00000584897 ZNF252P-AS1Q0IIN9 211 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 BRINP3Q76B58 766 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 LRRC56Q8IYG6 542 aaPredicted RBP2.58□□□□□ -2
SMCHD1-211ENST00000584897 WRNIP1Q96S55 665 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 TRIM55Q9BYV6 548 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 GPR62Q9BZJ7 368 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 METTL5Q9NRN9 209 aaKnown RBP2.58□□□□□ -2
SMCHD1-211ENST00000584897 CACNA2D2Q9NY47 1150 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 EPB41L3Q9Y2J2 1087 aaPredicted RBP2.58□□□□□ -2
SMCHD1-211ENST00000584897 TOPAZ1Q8N9V7 1692 aa2.58□□□□□ -2
SMCHD1-211ENST00000584897 hCG_2014768A0A024R1R8 64 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 CAPNS1P04632 268 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 PNLIPP16233 465 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 SYN1P17600 705 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 GRK4P32298 578 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 IGBP1P78318 339 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 EGR3Q06889 387 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 SERINC3Q13530 473 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 NR0B2Q15466 257 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 NBPF12Q5TAG4 269 aaPredicted RBP2.57□□□□□ -2
SMCHD1-211ENST00000584897 CDC42BPGQ6DT37 1551 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 ERMP1Q7Z2K6 904 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 JAMLQ86YT9 394 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 DAGLBQ8NCG7 672 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 OR6P1Q8NGX9 317 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 EPS8L3Q8TE67 593 aaKnown RBP2.57□□□□□ -2
SMCHD1-211ENST00000584897 GATA6Q92908 595 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 BUD13Q9BRD0 619 aaKnown RBP eCLIP2.57□□□□□ -26e-7■■■□□ 18.6
SMCHD1-211ENST00000584897 GBP3Q9H0R5 595 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 DBR1Q9UK59 544 aaKnown RBP2.57□□□□□ -2
SMCHD1-211ENST00000584897 TRPM1Q7Z4N2 1603 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 KNDC1Q76NI1 1749 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 BCL9O00512 1426 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 TEX51A0A1B0GUA7 166 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 EIF5BO60841 1220 aaKnown RBP2.57□□□□□ -2
SMCHD1-211ENST00000584897 GSNP06396 782 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 MPP2Q14168 576 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 AMIGO3Q86WK7 504 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 C12orf40Q86WS4 652 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 FBXL21Q9UKT6 434 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 PKD1L3Q7Z443 1732 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 MED26O95402 600 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 GBP2P32456 591 aaPredicted RBP2.57□□□□□ -2
SMCHD1-211ENST00000584897 DPH6Q7L8W6 267 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 HS2ST1Q7LGA3 356 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 PLEKHH3Q7Z736 793 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 DEFB132Q7Z7B7 95 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 ZNF654Q8IZM8 581 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 ZNF655Q8N720 491 aaPredicted RBP2.57□□□□□ -2
SMCHD1-211ENST00000584897 DDX11Q96FC9 970 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 HSPA12BQ96MM6 686 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 PSMD1Q99460 953 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 ANTXR1Q9H6X2 564 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 SUPT16HQ9Y5B9 1047 aaKnown RBP2.57□□□□□ -2
SMCHD1-211ENST00000584897 IRAK3Q9Y616 596 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 NOS1P29475 1434 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 ATP10DQ9P241 1426 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 SURF1Q15526 300 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 VPS72Q15906 364 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 DSCC1Q9BVC3 393 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 NRSN2Q9GZP1 204 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 GPR160Q9UJ42 338 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 CSADQ9Y600 493 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 CAPN6Q9Y6Q1 641 aa2.57□□□□□ -2
SMCHD1-211ENST00000584897 ADGRL3Q9HAR2 1447 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 MYO5BQ9ULV0 1848 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 CCDC85CA6NKD9 419 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 PAPLNO95428 1278 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 HPXP02790 462 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 CAP1Q01518 475 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 BMS1Q14692 1282 aaKnown RBP2.56□□□□□ -2
SMCHD1-211ENST00000584897 USPL1Q5W0Q7 1092 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 HGSNATQ68CP4 663 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 CYP2R1Q6VVX0 501 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 AGMOQ6ZNB7 445 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 TSPYL5Q86VY4 417 aaPredicted RBP2.56□□□□□ -2
SMCHD1-211ENST00000584897 FAM181AQ8N9Y4 354 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 SYTL5Q8TDW5 730 aaPredicted RBP2.56□□□□□ -2
SMCHD1-211ENST00000584897 ANKRD30BQ9BXX2 1392 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 TBC1D8O95759 1140 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 GARTP22102 1010 aa2.56□□□□□ -2
SMCHD1-211ENST00000584897 TMEM201Q5SNT2 666 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms