RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 NOC4LQ9BVI4 516 aaKnown RBP5.94□□□□□ -1.46
SMCHD1-209ENST00000583441 TGIF2Q9GZN2 237 aa5.94□□□□□ -1.46
SMCHD1-209ENST00000583441 PDLIM7Q9NR12 457 aa5.94□□□□□ -1.46
SMCHD1-209ENST00000583441 CHST7Q9NS84 486 aa5.94□□□□□ -1.46
SMCHD1-209ENST00000583441 MINPP1Q9UNW1 487 aa5.94□□□□□ -1.46
SMCHD1-209ENST00000583441 MEIS1O00470 390 aa5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 ZNF205O95201 554 aa5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 RLBP1P12271 317 aa5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 LIG3P49916 1009 aa5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 PWP1Q13610 501 aa5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 R3HDM1Q15032 1099 aaKnown RBP5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 MCTP2Q6DN12 878 aa5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 METTL16Q86W50 562 aaKnown RBP5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 NAT16Q8N8M0 369 aa5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 BCAS3Q9H6U6 928 aa5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 CCSER2Q9H7U1 834 aa5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 REV1Q9UBZ9 1251 aa5.93□□□□□ -1.46
SMCHD1-209ENST00000583441 GPR42O15529 346 aa5.92□□□□□ -1.46
SMCHD1-209ENST00000583441 BMP8BP34820 402 aa5.92□□□□□ -1.46
SMCHD1-209ENST00000583441 FOXE3Q13461 319 aa5.92□□□□□ -1.46
SMCHD1-209ENST00000583441 MEI1Q5TIA1 1274 aa5.92□□□□□ -1.46
SMCHD1-209ENST00000583441 DPY19L2P1Q6NXN4 242 aa5.92□□□□□ -1.46
SMCHD1-209ENST00000583441 PLEKHH3Q7Z736 793 aa5.92□□□□□ -1.46
SMCHD1-209ENST00000583441 USP48Q86UV5 1035 aa5.92□□□□□ -1.46
SMCHD1-209ENST00000583441 ZG16BQ96DA0 208 aa5.92□□□□□ -1.46
SMCHD1-209ENST00000583441 BPNT1O95861 308 aa5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 TFE3P19532 575 aaPredicted RBP5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 RPL13P26373 211 aaKnown RBP5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 CACNB2Q08289 660 aaPredicted RBP5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 GNL2Q13823 731 aaKnown RBP5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 NBPF12Q5TAG4 269 aaPredicted RBP5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 LRCH2Q5VUJ6 765 aa5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 ZNF654Q8IZM8 581 aa5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 IGDCC4Q8TDY8 1250 aa5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 CPA5Q8WXQ8 436 aa5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 TRIM8Q9BZR9 551 aa5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 GGT7Q9UJ14 662 aa5.91□□□□□ -1.46
SMCHD1-209ENST00000583441 A0A087X1B8 175 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 RGS13O14921 159 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 ZNF202O95125 648 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 VAV1P15498 845 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 TACR1P25103 407 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 RAD51AP2Q09MP3 1159 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 SF3A1Q15459 793 aaKnown RBP5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 ERMP1Q7Z2K6 904 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 SCUBE1Q8IWY4 988 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 AMER2Q8N7J2 671 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 LINC00482Q8N8I6 264 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 TXNDC5Q8NBS9 432 aaKnown RBP5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 VOPP1Q96AW1 172 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 DDX11Q96FC9 970 aa5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 LCORQ96JN0 433 aaPredicted RBP5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.9□□□□□ -1.46
SMCHD1-209ENST00000583441 NAALADL2Q58DX5 795 aa5.89□□□□□ -1.47
SMCHD1-209ENST00000583441 C9orf131Q5VYM1 1079 aa5.89□□□□□ -1.47
SMCHD1-209ENST00000583441 RSRP1Q9BUV0 290 aa5.89□□□□□ -1.47
SMCHD1-209ENST00000583441 JADE2Q9NQC1 790 aa5.89□□□□□ -1.47
SMCHD1-209ENST00000583441 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.89□□□□□ -1.47
SMCHD1-209ENST00000583441 MCM7P33993 719 aa5.88□□□□□ -1.47
SMCHD1-209ENST00000583441 SREK1Q8WXA9 508 aaKnown RBP5.88□□□□□ -1.47
SMCHD1-209ENST00000583441 TSPAN17Q96FV3 270 aa5.88□□□□□ -1.47
SMCHD1-209ENST00000583441 WWC2-AS2Q96NR7 200 aa5.88□□□□□ -1.47
SMCHD1-209ENST00000583441 DDX41Q9UJV9 622 aaKnown RBP5.88□□□□□ -1.47
SMCHD1-209ENST00000583441 ZFR2Q9UPR6 939 aaKnown RBP5.88□□□□□ -1.47
SMCHD1-209ENST00000583441 B4GALT3O60512 393 aa5.87□□□□□ -1.47
SMCHD1-209ENST00000583441 ZNF623O75123 536 aa5.87□□□□□ -1.47
SMCHD1-209ENST00000583441 THBS2P35442 1172 aa5.87□□□□□ -1.47
SMCHD1-209ENST00000583441 INHBCP55103 352 aa5.87□□□□□ -1.47
SMCHD1-209ENST00000583441 MIIPQ5JXC2 388 aa5.87□□□□□ -1.47
SMCHD1-209ENST00000583441 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.87□□□□□ -1.47
SMCHD1-209ENST00000583441 RELL1Q8IUW5 271 aa5.87□□□□□ -1.47
SMCHD1-209ENST00000583441 SLC43A3Q8NBI5 491 aa5.87□□□□□ -1.47
SMCHD1-209ENST00000583441 CSRNP2Q9H175 543 aa5.87□□□□□ -1.47
SMCHD1-209ENST00000583441 RXFP1Q9HBX9 757 aa5.87□□□□□ -1.47
SMCHD1-209ENST00000583441 PRR36Q9H6K5 1346 aa5.86□□□□□ -1.47
SMCHD1-209ENST00000583441 UBOX5O94941 541 aa5.86□□□□□ -1.47
SMCHD1-209ENST00000583441 CYP2C8P10632 490 aa5.86□□□□□ -1.47
SMCHD1-209ENST00000583441 CTSKP43235 329 aa5.86□□□□□ -1.47
SMCHD1-209ENST00000583441 RGS19P49795 217 aa5.86□□□□□ -1.47
SMCHD1-209ENST00000583441 KRTAP10-9P60411 292 aa5.86□□□□□ -1.47
SMCHD1-209ENST00000583441 USP33Q8TEY7 942 aa5.86□□□□□ -1.47
SMCHD1-209ENST00000583441 SPATA32Q96LK8 384 aa5.86□□□□□ -1.47
SMCHD1-209ENST00000583441 PATE3B3GLJ2 98 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 HTR3BO95264 441 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 GSTM1P09488 218 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 ACRP10323 421 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 CORO7P57737 925 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 KRTAP15-1Q3LI76 137 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 ZNF394Q53GI3 561 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 RTP2Q5QGT7 225 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 IGFL4Q6B9Z1 124 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 TMEM74Q96NL1 305 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 GORASP1Q9BQQ3 440 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 TINF2Q9BSI4 451 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 C11orf84Q9BUA3 381 aaPredicted RBP5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 KBTBD4Q9NVX7 518 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 GFOD1Q9NXC2 390 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 INPP5FQ9Y2H2 1132 aa5.85□□□□□ -1.47
SMCHD1-209ENST00000583441 DDX3XO00571 662 aaKnown RBP eCLIP5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 DNAJA2O60884 412 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms